Literature DB >> 21202728

Cadmium sulfite hexahydrate revisited.

Sergio Baggio, Andrés Ibáñez, Ricardo Baggio.   

Abstract

The present structural revision of the title compound, tetra-cadmium tetra-sulfite hexa-hydrate, [Cd(4)(SO(3))(4)(H(2)O)(5)]·H(2)O, is a low-temperature upgrade (T = 100 K and R = 0.017) of the original room-temperature structure reported by Kiers & Vos [Cryst. Struct. Commun. (1978). 7, 399-403; T = 293 K and R = 0.080). The compound is a three-dimensional polymer with four independent cadmium centres, four sulfite anions and six water mol-ecules, five of them coordinated to two cadmium centres and the remaining one an unbound solvent mol-ecule which completes the asymmetric unit. There are two types of cadmium environment: CdO(8) (through four chelating sulfite ligands) and CdO(6) (by way of six monocoordinated ligands). The former groups form planar arrays [parallel to (001) and separated by half a unit cell translation along c], made up of chains running along [110] and [10], respectively. These chains are, in turn, inter-connected both in an intra-planar as well as in an inter-planar fashion by the latter CdO(6) polyhedra into a tight three-dimensional framework. There is, in addition, an extensive network of hydrogen bonds, in which all 12 water H atoms act as donors and eight O atoms from all four sulfite groups and two water mol-ecules act as acceptors.

Entities:  

Year:  2008        PMID: 21202728      PMCID: PMC2961843          DOI: 10.1107/S1600536808011409

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Agre et al. (1981 ▶); Brown & Altermatt (1985 ▶); Elder et al. (1978 ▶); Harvey et al. (2006 ▶); Kiers & Vos (1978 ▶); Larsson & Kierkegaard (1969 ▶).

Experimental

Crystal data

[Cd4(SO3)4(H2O)5H2O M = 877.94 Monoclinic, a = 12.1406 (3) Å b = 10.5485 (3) Å c = 13.9329 (4) Å β = 103.93 (1)° V = 1731.82 (11) Å3 Z = 4 Mo Kα radiation μ = 5.41 mm−1 T = 150 (2) K 0.24 × 0.12 × 0.08 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.40, T max = 0.64 31336 measured reflections 3959 independent reflections 3922 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.017 wR(F 2) = 0.040 S = 1.26 3959 reflections 284 parameters 18 restraints All H-atom parameters refined Δρmax = 0.70 e Å−3 Δρmin = −0.56 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011409/br2070sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011409/br2070Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd4(SO3)4(H2O)5]·H2OF000 = 1648
Mr = 877.94Dx = 3.367 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9999 reflections
a = 12.1406 (3) Åθ = 1.9–27.2º
b = 10.5485 (3) ŵ = 5.41 mm1
c = 13.9329 (4) ÅT = 150 (2) K
β = 103.93 (1)ºPrisms, colourless
V = 1731.82 (11) Å30.24 × 0.12 × 0.08 mm
Z = 4
Bruker CCD area-detector diffractometer3959 independent reflections
Radiation source: fine-focus sealed tube3922 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.021
T = 150(2) Kθmax = 27.8º
φ and ω scansθmin = 1.7º
Absorption correction: multi-scan(SADABS; Sheldrick, 2001)h = −15→15
Tmin = 0.40, Tmax = 0.64k = −13→13
31336 measured reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.017All H-atom parameters refined
wR(F2) = 0.040  w = 1/[σ2(Fo2) + (0.0143P)2 + 2.6649P] where P = (Fo2 + 2Fc2)/3
S = 1.26(Δ/σ)max = 0.001
3959 reflectionsΔρmax = 0.70 e Å3
284 parametersΔρmin = −0.56 e Å3
18 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00228 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Cd10.374818 (15)0.126886 (17)0.512881 (12)0.01034 (5)
Cd20.126635 (15)0.392254 (17)0.488405 (12)0.00985 (5)
Cd30.651371 (15)0.304514 (17)0.535886 (13)0.01196 (5)
Cd40.251030 (14)0.282648 (17)0.748125 (12)0.00938 (5)
S10.39723 (5)0.40991 (6)0.57849 (4)0.00932 (11)
O110.30501 (15)0.49090 (17)0.51101 (13)0.0124 (4)
O210.33019 (15)0.29972 (16)0.60990 (13)0.0126 (4)
O310.45766 (15)0.34041 (17)0.50750 (13)0.0126 (3)
S20.58417 (5)0.04129 (6)0.66523 (4)0.01119 (12)
O120.58184 (16)0.10397 (17)0.56483 (13)0.0151 (4)
O220.45763 (15)0.03386 (19)0.66270 (13)0.0167 (4)
O320.61638 (16)−0.09653 (17)0.64740 (13)0.0139 (4)
S30.11611 (5)0.11583 (6)0.42209 (4)0.01077 (12)
O130.20348 (15)0.03728 (17)0.49607 (13)0.0142 (4)
O230.19010 (15)0.22405 (17)0.39362 (13)0.0131 (4)
O330.04828 (15)0.18855 (17)0.48327 (13)0.0146 (4)
S40.01096 (5)0.43144 (6)0.66480 (4)0.01148 (12)
O14−0.05477 (15)0.40529 (17)0.55726 (13)0.0144 (4)
O24−0.01213 (16)0.57150 (18)0.67606 (13)0.0166 (4)
O340.13592 (15)0.42562 (18)0.65556 (13)0.0137 (4)
O1W0.81699 (17)0.20277 (19)0.57164 (16)0.0197 (4)
H1WA0.814 (3)0.1330 (18)0.546 (3)0.045 (12)*
H1WB0.868 (2)0.246 (3)0.559 (3)0.030 (10)*
O2W0.7011 (2)0.3753 (2)0.68995 (16)0.0286 (5)
H2WA0.693 (3)0.4504 (13)0.700 (3)0.045 (12)*
H2WB0.760 (2)0.347 (3)0.725 (2)0.037 (11)*
O3W0.61491 (18)0.2464 (2)0.37382 (15)0.0203 (4)
H3WA0.6757 (19)0.249 (4)0.358 (3)0.046 (12)*
H3WB0.586 (3)0.1767 (18)0.359 (3)0.034 (11)*
O4W0.36903 (15)0.11969 (18)0.80645 (13)0.0133 (4)
H4WA0.411 (2)0.101 (4)0.7709 (19)0.032 (11)*
H4WB0.405 (2)0.133 (4)0.8633 (11)0.034 (11)*
O5W0.12980 (17)0.1237 (2)0.68645 (14)0.0186 (4)
H5WA0.100 (3)0.132 (4)0.6275 (9)0.033 (10)*
H5WB0.082 (2)0.113 (4)0.718 (2)0.047 (13)*
O6W0.83535 (18)0.2464 (2)0.83907 (16)0.0233 (4)
H6WA0.861 (3)0.180 (2)0.822 (3)0.058 (15)*
H6WB0.885 (3)0.284 (3)0.879 (3)0.052 (14)*
U11U22U33U12U13U23
Cd10.00977 (9)0.01060 (9)0.01059 (9)0.00073 (6)0.00235 (7)0.00000 (6)
Cd20.00950 (9)0.00952 (9)0.01055 (9)0.00085 (6)0.00243 (6)0.00000 (6)
Cd30.01045 (9)0.01000 (9)0.01560 (9)0.00038 (6)0.00346 (7)0.00120 (6)
Cd40.00934 (9)0.00987 (9)0.00873 (9)0.00011 (6)0.00176 (7)0.00026 (6)
S10.0086 (3)0.0090 (3)0.0101 (3)0.0010 (2)0.0019 (2)0.0000 (2)
O110.0097 (8)0.0102 (8)0.0169 (9)0.0021 (7)0.0027 (7)0.0033 (7)
O210.0167 (9)0.0100 (8)0.0131 (8)0.0000 (7)0.0071 (7)0.0011 (6)
O310.0110 (8)0.0147 (9)0.0130 (8)0.0020 (7)0.0047 (7)0.0004 (7)
S20.0119 (3)0.0101 (3)0.0110 (3)0.0023 (2)0.0015 (2)−0.0009 (2)
O120.0159 (9)0.0134 (9)0.0150 (9)−0.0016 (7)0.0019 (7)0.0036 (7)
O220.0130 (9)0.0238 (10)0.0145 (9)0.0067 (8)0.0054 (7)0.0030 (7)
O320.0172 (9)0.0101 (8)0.0136 (8)0.0053 (7)0.0022 (7)0.0003 (7)
S30.0099 (3)0.0109 (3)0.0115 (3)0.0002 (2)0.0025 (2)−0.0015 (2)
O130.0128 (9)0.0107 (9)0.0186 (9)0.0004 (7)0.0029 (7)0.0019 (7)
O230.0143 (9)0.0129 (9)0.0135 (8)0.0006 (7)0.0060 (7)0.0003 (7)
O330.0134 (9)0.0148 (9)0.0179 (9)0.0012 (7)0.0082 (7)−0.0013 (7)
S40.0106 (3)0.0121 (3)0.0123 (3)0.0021 (2)0.0038 (2)0.0015 (2)
O140.0138 (9)0.0145 (9)0.0139 (8)−0.0008 (7)0.0010 (7)−0.0009 (7)
O240.0201 (10)0.0140 (9)0.0164 (9)0.0065 (8)0.0057 (7)−0.0001 (7)
O340.0096 (8)0.0172 (9)0.0144 (8)0.0029 (7)0.0033 (7)0.0025 (7)
O1W0.0131 (10)0.0123 (9)0.0336 (11)−0.0006 (8)0.0052 (8)−0.0019 (8)
O2W0.0419 (14)0.0186 (11)0.0201 (10)0.0122 (10)−0.0027 (9)−0.0021 (8)
O3W0.0221 (11)0.0204 (10)0.0206 (10)−0.0038 (8)0.0094 (8)−0.0028 (8)
O4W0.0134 (9)0.0144 (9)0.0119 (8)0.0023 (7)0.0028 (7)−0.0005 (7)
O5W0.0201 (10)0.0231 (10)0.0129 (9)−0.0100 (8)0.0046 (8)−0.0013 (8)
O6W0.0177 (10)0.0271 (12)0.0230 (10)0.0056 (9)0.0006 (8)−0.0002 (9)
Cd1—O132.2452 (18)Cd3—O122.3482 (18)
Cd1—O32i2.2839 (18)Cd3—O11iii2.3518 (18)
Cd1—O222.3065 (18)Cd4—O342.2412 (18)
Cd1—O212.4078 (17)Cd4—O4W2.2599 (18)
Cd1—O122.4542 (18)Cd4—O5W2.2601 (19)
Cd1—O312.4752 (18)Cd4—O32iv2.2816 (18)
Cd1—O232.6544 (18)Cd4—O23v2.3203 (17)
Cd1—O12i2.7665 (19)Cd4—O212.3571 (17)
Cd2—O342.3311 (18)S1—O111.5364 (18)
Cd2—O14ii2.3365 (18)S1—O211.5416 (18)
Cd2—O332.3440 (18)S1—O311.5504 (18)
Cd2—O112.3545 (18)S2—O221.5302 (19)
Cd2—O24ii2.4074 (18)S2—O321.5410 (18)
Cd2—O232.4446 (18)S2—O121.5413 (18)
Cd2—O142.6091 (18)S3—O331.5269 (18)
Cd2—O212.8126 (18)S3—O131.5323 (18)
Cd3—O2W2.215 (2)S3—O231.5618 (18)
Cd3—O1W2.2272 (19)S4—O241.5189 (19)
Cd3—O3W2.278 (2)S4—O141.5435 (18)
Cd3—O312.3201 (17)S4—O341.5544 (18)
O13—Cd1—O32i95.70 (7)O34—Cd2—O2168.10 (6)
O13—Cd1—O2296.10 (7)O14ii—Cd2—O21134.22 (6)
O32i—Cd1—O22135.43 (6)O33—Cd2—O2189.52 (6)
O13—Cd1—O2192.82 (6)O11—Cd2—O2154.99 (5)
O32i—Cd1—O21136.46 (6)O24ii—Cd2—O21148.24 (6)
O22—Cd1—O2185.53 (6)O23—Cd2—O2174.20 (6)
O13—Cd1—O12147.85 (6)O14—Cd2—O21119.61 (5)
O32i—Cd1—O1289.36 (6)O2W—Cd3—O1W85.69 (8)
O22—Cd1—O1259.93 (6)O2W—Cd3—O3W173.70 (9)
O21—Cd1—O12105.18 (6)O1W—Cd3—O3W92.38 (8)
O13—Cd1—O31138.85 (6)O2W—Cd3—O3197.98 (8)
O32i—Cd1—O3189.02 (6)O1W—Cd3—O31160.09 (7)
O22—Cd1—O31108.83 (7)O3W—Cd3—O3185.86 (7)
O21—Cd1—O3158.40 (6)O2W—Cd3—O1299.36 (8)
O12—Cd1—O3172.77 (6)O1W—Cd3—O1282.53 (7)
O13—Cd1—O2358.36 (6)O3W—Cd3—O1286.31 (7)
O32i—Cd1—O2370.94 (6)O31—Cd3—O1277.57 (6)
O22—Cd1—O23148.13 (6)O2W—Cd3—O11iii86.15 (8)
O21—Cd1—O2377.80 (6)O1W—Cd3—O11iii104.64 (7)
O12—Cd1—O23150.86 (6)O3W—Cd3—O11iii88.54 (7)
O31—Cd1—O2385.29 (6)O31—Cd3—O11iii95.15 (6)
O13—Cd1—O12i81.22 (6)O12—Cd3—O11iii171.36 (6)
O32i—Cd1—O12i55.66 (6)O34—Cd4—O4W166.47 (7)
O22—Cd1—O12i84.10 (6)O34—Cd4—O5W91.25 (7)
O21—Cd1—O12i167.41 (6)O4W—Cd4—O5W82.57 (8)
O12—Cd1—O12i75.58 (6)O34—Cd4—O32iv103.74 (7)
O31—Cd1—O12i132.23 (5)O4W—Cd4—O32iv84.65 (7)
O23—Cd1—O12i107.85 (5)O5W—Cd4—O32iv162.15 (7)
O34—Cd2—O14ii93.39 (6)O34—Cd4—O23v103.74 (6)
O34—Cd2—O3395.19 (6)O4W—Cd4—O23v88.31 (6)
O14ii—Cd2—O33135.02 (6)O5W—Cd4—O23v89.67 (7)
O34—Cd2—O1188.74 (6)O32iv—Cd4—O23v77.53 (6)
O14ii—Cd2—O1184.47 (6)O34—Cd4—O2178.39 (6)
O33—Cd2—O11139.70 (6)O4W—Cd4—O2190.23 (6)
O34—Cd2—O24ii143.60 (6)O5W—Cd4—O2195.87 (7)
O14ii—Cd2—O24ii60.23 (6)O32iv—Cd4—O2196.59 (6)
O33—Cd2—O24ii88.82 (7)O23v—Cd4—O21174.04 (6)
O11—Cd2—O24ii111.03 (6)O11—S1—O21103.67 (10)
O34—Cd2—O23134.72 (6)O11—S1—O31105.04 (10)
O14ii—Cd2—O23131.44 (6)O21—S1—O31100.83 (10)
O33—Cd2—O2359.77 (6)O22—S2—O32103.91 (11)
O11—Cd2—O2389.63 (6)O22—S2—O12101.66 (10)
O24ii—Cd2—O2377.64 (6)O32—S2—O12102.03 (10)
O34—Cd2—O1457.77 (6)O33—S3—O13105.97 (10)
O14ii—Cd2—O1476.06 (7)O33—S3—O23101.25 (10)
O33—Cd2—O1471.77 (6)O13—S3—O23102.63 (10)
O11—Cd2—O14139.30 (6)O24—S4—O14102.06 (10)
O24ii—Cd2—O1489.80 (6)O24—S4—O34104.78 (11)
O23—Cd2—O14129.84 (6)O14—S4—O34101.50 (10)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O13i0.82 (3)1.88 (2)2.693 (3)170 (4)
O1W—H1WB···O14vi0.82 (3)1.93 (2)2.679 (3)151 (3)
O2W—H2WA···O4Wiv0.82 (3)1.93 (2)2.719 (3)162 (4)
O2W—H2WB···O6W0.82 (3)1.95 (2)2.681 (3)149 (4)
O3W—H3WA···O6Wvii0.82 (3)2.02 (2)2.833 (3)172 (4)
O3W—H3WB···O22i0.82 (3)2.29 (2)3.092 (3)168 (4)
O4W—H4WA···O220.82 (3)1.87 (2)2.651 (3)159 (3)
O4W—H4WB···O31v0.82 (3)1.98 (2)2.780 (3)167 (3)
O5W—H5WA···O330.82 (3)2.05 (2)2.848 (3)167 (4)
O5W—H5WB···O24viii0.82 (3)1.92 (2)2.708 (3)162 (4)
O6W—H6WA···O24ix0.82 (3)2.16 (2)2.876 (3)146 (4)
O6W—H6WB···O33x0.82 (3)2.18 (2)2.948 (3)157 (4)
Table 1

Selected bond lengths (Å)

Cd1—O132.2452 (18)
Cd1—O32i2.2839 (18)
Cd1—O222.3065 (18)
Cd1—O212.4078 (17)
Cd1—O122.4542 (18)
Cd1—O312.4752 (18)
Cd1—O232.6544 (18)
Cd1—O12i2.7665 (19)
Cd2—O342.3311 (18)
Cd2—O14ii2.3365 (18)
Cd2—O332.3440 (18)
Cd2—O112.3545 (18)
Cd2—O24ii2.4074 (18)
Cd2—O232.4446 (18)
Cd2—O142.6091 (18)
Cd2—O212.8126 (18)
Cd3—O2W2.215 (2)
Cd3—O1W2.2272 (19)
Cd3—O3W2.278 (2)
Cd3—O312.3201 (17)
Cd3—O122.3482 (18)
Cd3—O11iii2.3518 (18)
Cd4—O342.2412 (18)
Cd4—O4W2.2599 (18)
Cd4—O5W2.2601 (19)
Cd4—O32iv2.2816 (18)
Cd4—O23v2.3203 (17)
Cd4—O212.3571 (17)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯O13i0.82 (3)1.88 (2)2.693 (3)170 (4)
O1W—H1WB⋯O14vi0.82 (3)1.93 (2)2.679 (3)151 (3)
O2W—H2WA⋯O4Wiv0.82 (3)1.93 (2)2.719 (3)162 (4)
O2W—H2WB⋯O6W0.82 (3)1.95 (2)2.681 (3)149 (4)
O3W—H3WA⋯O6Wvii0.82 (3)2.02 (2)2.833 (3)172 (4)
O3W—H3WB⋯O22i0.82 (3)2.29 (2)3.092 (3)168 (4)
O4W—H4WA⋯O220.82 (3)1.87 (2)2.651 (3)159 (3)
O4W—H4WB⋯O31v0.82 (3)1.98 (2)2.780 (3)167 (3)
O5W—H5WA⋯O330.82 (3)2.05 (2)2.848 (3)167 (4)
O5W—H5WB⋯O24viii0.82 (3)1.92 (2)2.708 (3)162 (4)
O6W—H6WA⋯O24ix0.82 (3)2.16 (2)2.876 (3)146 (4)
O6W—H6WB⋯O33x0.82 (3)2.18 (2)2.948 (3)157 (4)

Symmetry codes: (i) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) ; (ix) ; (x) .

  3 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A new simplifying approach to molecular geometry description: the vectorial bond-valence model.

Authors:  Miguel Angel Harvey; Sergio Baggio; Ricardo Baggio
Journal:  Acta Crystallogr B       Date:  2006-11-14

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total

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