Literature DB >> 21202710

(2E)-2-(2,4-Dichloro-phenyl-sulfon-yl)-3-(4-methyl-anilino)-3-(methyl-sulfan-yl)acrylonitrile.

Mario V Capparelli, Arthur R Barazarte, Jaime E Charris.   

Abstract

The title compound, C(17)H(14)Cl(2)N(2)O(2)S(2), and the 3-methoxy-anilino analogue reported in the preceding paper have been used as starting materials to develop benzothia-zine derivatives with anti-malarial activity. The mol-ecule displays an E (trans) configuration about the central double bond. Due to conjugation in the C=C-C N group, the putative single bond shows a significant shortening [1.418 (3) Å]. The mol-ecule has a six-membered ring involving an intra-molecular N-H⋯O(sulfon-yl) bond, which is an example of resonance-assisted hydrogen bonding. In the crystal structure, bonds of the C-H⋯O(sulfon-yl) and C-H⋯N(cyano) types form double layers of mol-ecules parallel to (01). Within these layers there are π-π inter-actions between benzene rings of pairs of centrosymmetrically related mol-ecules, with distances of 3.7969 (12) Å between centroids. C-H⋯π interactions are also present.

Entities:  

Year:  2008        PMID: 21202710      PMCID: PMC2961619          DOI: 10.1107/S1600536808012531

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Allen (2002 ▶); Allen et al. (1987 ▶); Baraza­rte et al. (2008 ▶); Capparelli et al. (2008 ▶); Charris et al. (2005 ▶, 2007 ▶); Gilli et al. (1989 ▶); Hirshfeld (1976 ▶); Kennard et al. (2003 ▶); Krivokolysko et al. (2002 ▶); Song et al. (2005 ▶); Tominaga et al. (1989 ▶, 2002 ▶).

Experimental

Crystal data

C17H14Cl2N2O2S2 M = 413.32 Monoclinic, a = 11.3975 (6) Å b = 14.8147 (8) Å c = 11.7215 (6) Å β = 109.444 (1)° V = 1866.30 (17) Å3 Z = 4 Mo Kα radiation μ = 0.58 mm−1 T = 296 (2) K 0.55 × 0.36 × 0.27 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.765, T max = 0.851 12685 measured reflections 4562 independent reflections 3674 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.117 S = 1.03 4562 reflections 229 parameters 2 restraints H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808012531/bg2185sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808012531/bg2185Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H14Cl2N2O2S2F000 = 848
Mr = 413.32Dx = 1.471 Mg m3
Monoclinic, P21/nMelting point = 455–457 K
Hall symbol: -P 2ynMo Kα radiation λ = 0.71073 Å
a = 11.3975 (6) ÅCell parameters from 5367 reflections
b = 14.8147 (8) Åθ = 2.3–28.5º
c = 11.7215 (6) ŵ = 0.59 mm1
β = 109.444 (1)ºT = 296 (2) K
V = 1866.30 (17) Å3Prism, colorless
Z = 40.55 × 0.36 × 0.27 mm
Bruker SMART APEX diffractometer4562 independent reflections
Radiation source: fine-focus sealed tube3674 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.015
Detector resolution: 8.13 pixels mm-1θmax = 29.0º
T = 296(2) Kθmin = 2.2º
φ and ω scansh = −14→12
Absorption correction: multi-scan(SADABS; Bruker, 2001)k = −19→19
Tmin = 0.765, Tmax = 0.851l = −15→14
12685 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.117  w = 1/[σ2(Fo2) + (0.0628P)2 + 0.5083P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
4562 reflectionsΔρmax = 0.38 e Å3
229 parametersΔρmin = −0.30 e Å3
2 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.36812 (4)0.42470 (4)0.06767 (4)0.04761 (14)
S20.64407 (5)0.37305 (4)0.41840 (4)0.05631 (15)
Cl10.30933 (5)0.54484 (4)0.27681 (5)0.05801 (15)
Cl2−0.14871 (5)0.40783 (6)0.14708 (6)0.0824 (2)
O10.35547 (15)0.36287 (12)−0.02987 (13)0.0681 (4)
O20.40074 (13)0.51660 (10)0.05390 (12)0.0553 (3)
N10.4303 (2)0.21530 (14)0.23381 (18)0.0737 (6)
N20.60865 (15)0.51086 (11)0.25871 (13)0.0494 (4)
H20.59040.52660.18420.059*
C110.22335 (17)0.42192 (12)0.09442 (15)0.0438 (4)
C120.19883 (17)0.47436 (12)0.18235 (16)0.0445 (4)
C130.08383 (18)0.47058 (14)0.19803 (18)0.0522 (4)
H130.06720.50620.25620.063*
C14−0.00560 (18)0.41325 (15)0.12618 (18)0.0542 (5)
C150.0156 (2)0.36108 (15)0.0379 (2)0.0610 (5)
H15−0.04620.3234−0.01050.073*
C160.1306 (2)0.36578 (14)0.02256 (18)0.0554 (5)
H160.14600.3308−0.03680.066*
C210.67534 (18)0.57496 (13)0.34797 (16)0.0466 (4)
C220.7764 (2)0.61972 (15)0.33448 (19)0.0577 (5)
H220.79900.60980.26620.061 (6)*
C230.8437 (2)0.67925 (16)0.4231 (2)0.0639 (6)
H230.91150.70920.41330.077*
C240.8129 (2)0.69545 (14)0.5260 (2)0.0586 (5)
C250.7089 (2)0.65227 (14)0.53511 (19)0.0583 (5)
H250.68480.66340.60220.070*
C260.6398 (2)0.59308 (14)0.44742 (19)0.0534 (5)
H260.56950.56550.45530.064*
C10.45350 (19)0.28900 (14)0.22053 (17)0.0524 (4)
C20.47563 (17)0.38061 (13)0.19901 (15)0.0453 (4)
C30.57197 (17)0.42866 (13)0.28006 (15)0.0438 (4)
C40.8069 (2)0.3985 (2)0.4575 (2)0.0769 (7)
H4A0.85430.35770.51930.115*
H4B0.82190.45940.48690.115*
H4C0.83160.39220.38720.115*
C50.8896 (3)0.75847 (17)0.6233 (3)0.0873 (8)
H5A0.97530.74030.64840.131*
H5B0.86050.75630.69120.131*
H5C0.88190.81890.59210.131*
U11U22U33U12U13U23
S10.0439 (2)0.0669 (3)0.0322 (2)0.0030 (2)0.01291 (17)−0.00344 (19)
S20.0637 (3)0.0598 (3)0.0387 (2)−0.0013 (2)0.0081 (2)0.0079 (2)
Cl10.0546 (3)0.0655 (3)0.0544 (3)−0.0084 (2)0.0188 (2)−0.0189 (2)
Cl20.0437 (3)0.1218 (6)0.0828 (4)−0.0037 (3)0.0227 (3)0.0103 (4)
O10.0607 (9)0.1015 (12)0.0413 (7)0.0062 (8)0.0161 (6)−0.0211 (7)
O20.0475 (7)0.0724 (9)0.0458 (7)−0.0004 (6)0.0153 (6)0.0141 (6)
N10.0953 (15)0.0615 (12)0.0611 (11)−0.0123 (11)0.0217 (11)−0.0057 (9)
N20.0524 (9)0.0587 (9)0.0349 (7)−0.0031 (7)0.0116 (6)0.0047 (6)
C110.0420 (9)0.0517 (10)0.0366 (8)0.0000 (7)0.0115 (7)0.0002 (7)
C120.0428 (9)0.0503 (10)0.0379 (8)−0.0005 (7)0.0100 (7)−0.0004 (7)
C130.0476 (10)0.0653 (12)0.0455 (10)0.0058 (9)0.0177 (8)0.0005 (9)
C140.0409 (10)0.0707 (13)0.0496 (10)0.0016 (9)0.0132 (8)0.0121 (9)
C150.0523 (12)0.0683 (13)0.0556 (12)−0.0123 (10)0.0088 (9)−0.0044 (10)
C160.0544 (11)0.0624 (12)0.0465 (10)−0.0041 (9)0.0130 (9)−0.0104 (9)
C210.0468 (10)0.0504 (10)0.0412 (9)0.0003 (8)0.0129 (7)0.0037 (7)
C220.0588 (12)0.0696 (13)0.0495 (11)−0.0061 (10)0.0243 (9)0.0057 (9)
C230.0618 (13)0.0639 (13)0.0672 (13)−0.0165 (10)0.0228 (11)0.0040 (10)
C240.0699 (13)0.0439 (10)0.0570 (11)−0.0023 (9)0.0145 (10)0.0035 (9)
C250.0749 (14)0.0521 (11)0.0532 (11)0.0017 (10)0.0282 (10)−0.0035 (9)
C260.0534 (11)0.0566 (11)0.0554 (11)−0.0028 (9)0.0251 (9)−0.0004 (9)
C10.0586 (12)0.0573 (10)0.0413 (9)0.0000 (9)0.0167 (8)−0.0073 (8)
C20.0472 (10)0.0520 (9)0.0358 (8)0.0051 (8)0.0128 (7)−0.0026 (7)
C30.0445 (9)0.0543 (10)0.0334 (8)0.0070 (8)0.0139 (7)0.0004 (7)
C40.0582 (14)0.1022 (19)0.0608 (14)0.0158 (13)0.0070 (11)0.0216 (13)
C50.112 (2)0.0604 (14)0.0782 (17)−0.0191 (14)0.0166 (16)−0.0122 (12)
S1—O11.4343 (15)C16—H160.9300
S1—O21.4345 (15)C21—C261.382 (3)
S1—C21.7442 (18)C21—C221.383 (3)
S1—C111.7796 (19)C22—C231.384 (3)
S2—C31.7596 (18)C22—H220.9300
S2—C41.798 (3)C23—C241.385 (3)
Cl1—C121.7245 (18)C23—H230.9300
Cl2—C141.730 (2)C24—C251.382 (3)
N1—C11.146 (3)C24—C51.508 (3)
N2—C31.338 (2)C25—C261.381 (3)
N2—C211.430 (2)C25—H250.9300
N2—H20.8600C26—H260.9300
C11—C161.388 (3)C1—C21.418 (3)
C11—C121.391 (3)C2—C31.386 (3)
C12—C131.384 (3)C4—H4A0.9600
C13—C141.378 (3)C4—H4B0.9600
C13—H130.9300C4—H4C0.9600
C14—C151.375 (3)C5—H5A0.9600
C15—C161.383 (3)C5—H5B0.9600
C15—H150.9300C5—H5C0.9600
O1—S1—O2118.52 (10)C23—C22—H22120.2
O1—S1—C2108.61 (9)C22—C23—C24121.7 (2)
O2—S1—C2108.81 (9)C22—C23—H23119.1
O1—S1—C11105.82 (9)C24—C23—H23119.1
O2—S1—C11109.39 (9)C25—C24—C23117.4 (2)
C2—S1—C11104.83 (9)C25—C24—C5121.6 (2)
C3—S2—C4105.22 (10)C23—C24—C5121.0 (2)
C3—N2—C21126.20 (15)C26—C25—C24121.8 (2)
C3—N2—H2116.9C26—C25—H25119.1
C21—N2—H2116.9C24—C25—H25119.1
C16—C11—C12118.95 (17)C25—C26—C21119.76 (19)
C16—C11—S1118.07 (14)C25—C26—H26120.1
C12—C11—S1122.97 (14)C21—C26—H26120.1
C13—C12—C11120.56 (17)N1—C1—C2176.8 (2)
C13—C12—Cl1117.44 (14)C3—C2—C1121.12 (17)
C11—C12—Cl1122.00 (14)C3—C2—S1125.19 (14)
C14—C13—C12118.97 (18)C1—C2—S1113.64 (14)
C14—C13—H13120.5N2—C3—C2124.40 (16)
C12—C13—H13120.5N2—C3—S2121.29 (14)
C15—C14—C13121.78 (19)C2—C3—S2114.31 (14)
C15—C14—Cl2119.36 (17)S2—C4—H4A109.5
C13—C14—Cl2118.85 (16)S2—C4—H4B109.5
C14—C15—C16118.76 (19)H4A—C4—H4B109.5
C14—C15—H15120.6S2—C4—H4C109.5
C16—C15—H15120.6H4A—C4—H4C109.5
C15—C16—C11120.96 (19)H4B—C4—H4C109.5
C15—C16—H16119.5C24—C5—H5A109.5
C11—C16—H16119.5C24—C5—H5B109.5
C26—C21—C22119.52 (19)H5A—C5—H5B109.5
C26—C21—N2120.82 (17)C24—C5—H5C109.5
C22—C21—N2119.66 (17)H5A—C5—H5C109.5
C21—C22—C23119.66 (19)H5B—C5—H5C109.5
C21—C22—H22120.2
O1—S1—C11—C16−0.27 (19)C21—C22—C23—C240.1 (4)
O2—S1—C11—C16128.48 (16)C22—C23—C24—C25−2.3 (3)
C2—S1—C11—C16−114.99 (16)C22—C23—C24—C5178.2 (2)
O1—S1—C11—C12−179.20 (16)C23—C24—C25—C261.9 (3)
O2—S1—C11—C12−50.45 (17)C5—C24—C25—C26−178.7 (2)
C2—S1—C11—C1266.08 (17)C24—C25—C26—C210.8 (3)
C16—C11—C12—C130.1 (3)C22—C21—C26—C25−3.1 (3)
S1—C11—C12—C13178.98 (15)N2—C21—C26—C25177.15 (18)
C16—C11—C12—Cl1179.16 (15)O1—S1—C2—C3133.90 (16)
S1—C11—C12—Cl1−1.9 (2)O2—S1—C2—C33.58 (19)
C11—C12—C13—C140.8 (3)C11—S1—C2—C3−113.35 (17)
Cl1—C12—C13—C14−178.37 (15)O1—S1—C2—C1−48.61 (17)
C12—C13—C14—C15−1.3 (3)O2—S1—C2—C1−178.93 (14)
C12—C13—C14—Cl2179.34 (15)C11—S1—C2—C164.14 (15)
C13—C14—C15—C160.9 (3)C21—N2—C3—C2157.68 (18)
Cl2—C14—C15—C16−179.72 (17)C21—N2—C3—S2−21.5 (3)
C14—C15—C16—C110.0 (3)C1—C2—C3—N2170.85 (18)
C12—C11—C16—C15−0.4 (3)S1—C2—C3—N2−11.8 (3)
S1—C11—C16—C15−179.42 (17)C1—C2—C3—S2−9.9 (2)
C3—N2—C21—C26−46.0 (3)S1—C2—C3—S2167.40 (11)
C3—N2—C21—C22134.3 (2)C4—S2—C3—N2−39.06 (19)
C26—C21—C22—C232.6 (3)C4—S2—C3—C2141.68 (16)
N2—C21—C22—C23−177.62 (19)
D—H···AD—HH···AD···AD—H···A
N2—H2···O20.862.202.756 (2)123
C4—H4A···N1i0.962.613.504 (3)156
C5—H5C···O2ii0.962.503.442 (3)167
C16—H16···O10.932.412.828 (3)107
C4—H4B···Cg20.962.763.582 (3)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O20.862.202.756 (2)123
C4—H4A⋯N1i0.962.613.504 (3)156
C5—H5C⋯O2ii0.962.503.442 (3)167
C4—H4BCg20.962.763.582 (3)144

Symmetry codes: (i) ; (ii) . Cg2 is the centroid of the C21–C26 ring.

  4 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  (2E)-2-(2,4-Dichloro-phenyl-sulfon-yl)-3-(3-methoxy-anilino)-3-(methyl-sulfan-yl)acrylonitrile.

Authors:  Mario V Capparelli; Arthur R Barazarte; Jaime E Charris
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03

4.  Synthesis, antimalarial activity, structure-activity relationship analysis of thieno-[3,2-b]benzothiazine S,S-dioxide analogs.

Authors:  Arthur Barazarte; José Camacho; José Domínguez; Gricela Lobo; Neira Gamboa; Juan Rodrigues; Mario V Capparelli; Angel Alvarez-Larena; Sebastian Andujar; Daniel Enriz; Jaime Charris
Journal:  Bioorg Med Chem       Date:  2008-02-08       Impact factor: 3.641

  4 in total
  1 in total

1.  (2E)-2-(2,4-Dichloro-phenyl-sulfon-yl)-3-(3-methoxy-anilino)-3-(methyl-sulfan-yl)acrylonitrile.

Authors:  Mario V Capparelli; Arthur R Barazarte; Jaime E Charris
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03
  1 in total

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