Literature DB >> 21202707

N-{3-[Bis(2-hydroxy-ethyl)amino-meth-yl]-5-nitro-phen-yl}benzamide.

Anna Mai1, Gul S Khan, George R Clark, David Barker.   

Abstract

The title compound, C(18)H(21)N(3)O(5), was prepared by the reaction of 3-benzamido-5-nitro-benzyl methane-sulfonate with diethano-lamine and is an inter-mediate in the synthesis of DNA minor-groove-binding polybenzamide agents capable of being conjugated to additional biologically active species. The asymmetric unit contains two independent mol-ecules, which differ only in the orientations of the hydroxy-ethyl groups. In the crystal structure, inter-molecular N-H⋯O and O-H⋯O hydrogen bonds link mol-ecules into one-dimensional chains.

Entities:  

Year:  2008        PMID: 21202707      PMCID: PMC2961623          DOI: 10.1107/S1600536808009410

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature on the biological activity of polybenzamide DNA binding agents, see: Storl et al. (1993 ▶). For related literature on natural and synthetic minor-groove binding agents, including agents containing conjugates, see: Arcamone et al. (1964 ▶); Atwell et al. (1995 ▶); Baraldi et al. (1999 ▶, 2004 ▶, 2007 ▶); Kumar et al. (2004 ▶); Sengupta et al. (1996 ▶); Stafford et al. (2007 ▶); Turner et al. (1999 ▶); Wemmer (2000 ▶); Yan et al. (1997 ▶). For related literature, see: Barker et al. (2008 ▶).

Experimental

Crystal data

C18H21N3O5 M = 359.38 Monoclinic, a = 22.7867 (3) Å b = 11.0879 (1) Å c = 13.5106 (1) Å β = 90.114 (1)° V = 3413.54 (6) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 90 (2) K 0.34 × 0.22 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.858, T max = 0.978 20279 measured reflections 6944 independent reflections 5142 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.134 S = 1.04 6944 reflections 485 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 1995 ▶); cell refinement: SAINT (Bruker, 1995 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808009410/lh2602sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808009410/lh2602Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H21N3O5F000 = 1520
Mr = 359.38Dx = 1.399 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8192 reflections
a = 22.7867 (3) Åθ = 0.9–26.4º
b = 11.0879 (1) ŵ = 0.10 mm1
c = 13.5106 (1) ÅT = 90 (2) K
β = 90.114 (1)ºNeedle, yellow
V = 3413.54 (6) Å30.34 × 0.22 × 0.20 mm
Z = 8
Bruker SMART CCD diffractometer6944 independent reflections
Radiation source: fine-focus sealed tube5142 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.039
T = 90(2) Kθmax = 26.4º
area–detector ω scansθmin = 0.9º
Absorption correction: multi-scan(SADABS; Sheldrick, 1997)h = −28→25
Tmin = 0.858, Tmax = 0.978k = −12→13
20279 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.058H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.134  w = 1/[σ2(Fo2) + (0.0471P)2 + 3.1255P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
6944 reflectionsΔρmax = 0.25 e Å3
485 parametersΔρmin = −0.29 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1A0.75115 (7)0.40282 (14)0.38171 (13)0.0273 (4)
O2A0.49791 (7)0.27802 (15)0.31865 (13)0.0281 (4)
O3A0.56436 (7)0.41672 (15)0.30441 (13)0.0313 (4)
O4A0.74524 (7)−0.35100 (16)0.37188 (13)0.0298 (4)
HO4A0.7493 (15)−0.433 (3)0.384 (2)0.066 (11)*
O5A0.67682 (7)−0.03575 (15)0.58394 (12)0.0220 (4)
HO5A0.7008 (14)−0.098 (3)0.574 (2)0.051 (9)*
N1A0.75628 (7)0.19893 (16)0.37317 (13)0.0169 (4)
H1A0.78000.13870.37340.020*
N2A0.54971 (8)0.31179 (18)0.31848 (14)0.0218 (4)
N3A0.63691 (8)−0.19644 (16)0.41918 (13)0.0186 (4)
C1A0.62210 (9)0.0133 (2)0.35151 (15)0.0185 (5)
C2A0.68029 (9)0.0499 (2)0.36241 (15)0.0176 (5)
H2A0.7094−0.00810.37080.021*
C3A0.69585 (9)0.1717 (2)0.36096 (15)0.0167 (5)
C4A0.65270 (9)0.2599 (2)0.34618 (15)0.0179 (5)
H4A0.66210.34150.34400.021*
C5A0.59536 (9)0.2201 (2)0.33495 (15)0.0186 (5)
C6A0.57860 (9)0.1005 (2)0.33811 (15)0.0179 (5)
H6A0.53940.07860.33150.022*
C7A0.60623 (9)−0.1185 (2)0.34772 (16)0.0199 (5)
H7A10.5643−0.12610.35870.024*
H7A20.6143−0.14820.28160.024*
C8A0.78069 (9)0.3098 (2)0.38447 (15)0.0178 (5)
C9A0.84602 (9)0.3155 (2)0.39933 (14)0.0170 (5)
C10A0.88212 (9)0.2143 (2)0.40848 (15)0.0188 (5)
H10A0.86590.13740.40610.023*
C11A0.94201 (10)0.2282 (2)0.42108 (16)0.0223 (5)
H11A0.96580.16030.42690.027*
C12A0.96711 (10)0.3422 (2)0.42520 (16)0.0234 (5)
H12A1.00740.35080.43320.028*
C13A0.93159 (10)0.4429 (2)0.41722 (17)0.0244 (5)
H13A0.94810.51950.42020.029*
C14A0.87147 (10)0.4300 (2)0.40483 (16)0.0222 (5)
H14A0.84790.49820.40010.027*
C15A0.63902 (10)−0.3212 (2)0.38016 (16)0.0217 (5)
H15A0.6036−0.33710.34240.026*
H15B0.6402−0.37750.43510.026*
C16A0.69204 (10)−0.3417 (2)0.31475 (17)0.0250 (5)
H16A0.6865−0.41520.27690.030*
H16B0.6956−0.27530.26840.030*
C17A0.61045 (10)−0.1931 (2)0.51788 (16)0.0222 (5)
H17A0.6280−0.25640.55780.027*
H17B0.5689−0.21100.51160.027*
C18A0.61714 (10)−0.0742 (2)0.57241 (17)0.0225 (5)
H18A0.5957−0.01240.53670.027*
H18B0.5995−0.08190.63740.027*
O1B0.75199 (7)0.42678 (15)0.63678 (14)0.0322 (4)
O2B1.00570 (7)0.29674 (15)0.68363 (12)0.0273 (4)
O3B0.93973 (7)0.43732 (15)0.69510 (13)0.0297 (4)
O4B0.75112 (7)−0.22469 (16)0.54787 (15)0.0344 (4)
HO4B0.7437 (17)−0.269 (4)0.482 (3)0.097 (14)*
O5B0.81384 (7)−0.05141 (15)0.39894 (13)0.0241 (4)
HO5B0.7984 (15)−0.080 (3)0.455 (3)0.066 (11)*
N1B0.74752 (7)0.22275 (16)0.62409 (13)0.0172 (4)
H1B0.72400.16310.61500.021*
N2B0.95413 (8)0.33162 (17)0.68277 (13)0.0207 (4)
N3B0.87113 (8)−0.15414 (16)0.55811 (13)0.0189 (4)
C1B0.88035 (9)0.0342 (2)0.65113 (15)0.0171 (5)
C2B0.82249 (9)0.0722 (2)0.63819 (15)0.0175 (4)
H2B0.79330.01470.62860.021*
C3B0.80713 (9)0.1941 (2)0.63923 (14)0.0164 (4)
C4B0.85090 (9)0.2812 (2)0.65427 (15)0.0182 (5)
H4B0.84210.36310.65550.022*
C5B0.90790 (9)0.2400 (2)0.66727 (15)0.0181 (5)
C6B0.92402 (9)0.1200 (2)0.66600 (15)0.0182 (5)
H6B0.96300.09720.67480.022*
C7B0.89400 (10)−0.0993 (2)0.64869 (16)0.0201 (5)
H7B10.9361−0.11110.65200.024*
H7B20.8765−0.13830.70580.024*
C8B0.72308 (9)0.3357 (2)0.62235 (16)0.0183 (5)
C9B0.65804 (9)0.3421 (2)0.60460 (15)0.0174 (5)
C10B0.62171 (9)0.2426 (2)0.59274 (16)0.0211 (5)
H10B0.63760.16530.59350.025*
C11B0.56166 (10)0.2582 (2)0.57970 (17)0.0230 (5)
H11B0.53750.19120.57180.028*
C12B0.53755 (10)0.3727 (2)0.57847 (16)0.0230 (5)
H12B0.49730.38260.56990.028*
C13B0.57351 (10)0.4725 (2)0.59003 (17)0.0244 (5)
H13B0.55740.54960.58940.029*
C14B0.63358 (10)0.4578 (2)0.60249 (16)0.0217 (5)
H14B0.65760.52510.60950.026*
C15B0.85390 (10)−0.2800 (2)0.56934 (18)0.0241 (5)
H15C0.8810−0.32050.61380.029*
H15D0.8556−0.32020.50560.029*
C16B0.79190 (10)−0.2881 (2)0.6105 (2)0.0295 (6)
H16C0.7803−0.37210.61520.035*
H16D0.7910−0.25370.67650.035*
C17B0.90493 (9)−0.1255 (2)0.46962 (16)0.0219 (5)
H17C0.9354−0.18560.46030.026*
H17D0.9237−0.04760.47770.026*
C18B0.86478 (10)−0.1229 (2)0.37859 (17)0.0256 (5)
H18C0.8858−0.08910.32270.031*
H18D0.8530−0.20440.36160.031*
U11U22U33U12U13U23
O1A0.0197 (8)0.0177 (9)0.0446 (10)0.0000 (7)−0.0021 (7)−0.0027 (7)
O2A0.0161 (8)0.0301 (10)0.0381 (10)0.0037 (7)−0.0001 (7)0.0003 (8)
O3A0.0264 (9)0.0175 (9)0.0500 (11)0.0047 (7)−0.0008 (8)0.0038 (8)
O4A0.0260 (9)0.0202 (10)0.0433 (10)0.0004 (7)−0.0023 (8)−0.0025 (8)
O5A0.0189 (8)0.0200 (9)0.0269 (9)−0.0015 (7)−0.0029 (6)−0.0022 (7)
N1A0.0124 (9)0.0179 (10)0.0203 (9)0.0004 (7)0.0003 (7)0.0007 (7)
N2A0.0177 (10)0.0245 (11)0.0231 (10)0.0042 (8)0.0009 (7)−0.0007 (8)
N3A0.0184 (9)0.0159 (10)0.0216 (9)−0.0025 (7)−0.0008 (7)0.0015 (7)
C1A0.0160 (11)0.0223 (12)0.0172 (11)−0.0010 (9)−0.0012 (8)0.0007 (9)
C2A0.0165 (11)0.0197 (12)0.0166 (10)0.0022 (9)−0.0004 (8)0.0013 (8)
C3A0.0140 (10)0.0212 (12)0.0148 (10)−0.0024 (9)0.0008 (8)0.0000 (8)
C4A0.0172 (11)0.0184 (12)0.0180 (11)−0.0006 (9)0.0019 (8)0.0009 (8)
C5A0.0162 (11)0.0225 (12)0.0171 (10)0.0037 (9)0.0016 (8)0.0010 (9)
C6A0.0134 (10)0.0231 (12)0.0174 (10)−0.0027 (9)0.0019 (8)0.0011 (9)
C7A0.0151 (10)0.0193 (12)0.0252 (12)−0.0027 (9)−0.0041 (9)0.0002 (9)
C8A0.0195 (11)0.0184 (12)0.0156 (10)0.0003 (9)0.0014 (8)0.0006 (8)
C9A0.0145 (10)0.0248 (12)0.0116 (10)−0.0020 (9)0.0011 (8)−0.0003 (8)
C10A0.0176 (11)0.0198 (12)0.0188 (11)−0.0031 (9)0.0007 (8)0.0002 (9)
C11A0.0191 (11)0.0266 (13)0.0213 (11)0.0031 (10)0.0001 (9)0.0023 (9)
C12A0.0152 (11)0.0326 (14)0.0223 (12)−0.0056 (10)−0.0007 (9)0.0000 (10)
C13A0.0216 (12)0.0227 (13)0.0290 (12)−0.0079 (10)0.0007 (10)−0.0021 (10)
C14A0.0205 (12)0.0219 (12)0.0242 (12)−0.0008 (9)−0.0004 (9)−0.0022 (9)
C15A0.0234 (12)0.0193 (12)0.0226 (11)−0.0049 (9)−0.0001 (9)−0.0001 (9)
C16A0.0262 (12)0.0216 (13)0.0271 (12)0.0016 (10)0.0019 (10)−0.0004 (9)
C17A0.0201 (11)0.0217 (12)0.0250 (12)−0.0027 (9)0.0020 (9)−0.0009 (9)
C18A0.0195 (11)0.0245 (13)0.0233 (12)−0.0001 (10)0.0031 (9)−0.0017 (9)
O1B0.0197 (9)0.0183 (9)0.0585 (12)−0.0010 (7)−0.0027 (8)−0.0001 (8)
O2B0.0166 (8)0.0315 (10)0.0340 (9)−0.0032 (7)0.0004 (7)−0.0044 (8)
O3B0.0248 (9)0.0210 (10)0.0432 (10)−0.0052 (7)0.0037 (8)−0.0076 (7)
O4B0.0218 (9)0.0294 (10)0.0519 (12)0.0049 (8)−0.0131 (8)−0.0103 (9)
O5B0.0194 (8)0.0239 (9)0.0289 (9)0.0039 (7)−0.0015 (7)0.0039 (7)
N1B0.0120 (9)0.0178 (10)0.0217 (9)−0.0008 (7)−0.0002 (7)−0.0017 (7)
N2B0.0178 (10)0.0248 (11)0.0195 (9)−0.0052 (8)0.0029 (7)−0.0023 (8)
N3B0.0186 (9)0.0159 (10)0.0223 (10)0.0001 (7)0.0000 (7)−0.0012 (7)
C1B0.0164 (11)0.0211 (12)0.0136 (10)0.0001 (9)−0.0007 (8)0.0007 (8)
C2B0.0171 (11)0.0183 (11)0.0170 (10)−0.0029 (9)−0.0002 (8)−0.0019 (8)
C3B0.0154 (10)0.0214 (12)0.0124 (10)−0.0005 (9)0.0017 (8)−0.0020 (8)
C4B0.0188 (11)0.0191 (12)0.0168 (10)0.0013 (9)0.0031 (8)−0.0018 (8)
C5B0.0174 (11)0.0234 (12)0.0134 (10)−0.0053 (9)0.0032 (8)−0.0020 (8)
C6B0.0142 (10)0.0251 (12)0.0154 (10)0.0009 (9)0.0005 (8)−0.0023 (9)
C7B0.0170 (11)0.0194 (12)0.0238 (11)0.0026 (9)−0.0029 (9)0.0016 (9)
C8B0.0190 (11)0.0170 (12)0.0189 (11)0.0001 (9)0.0012 (8)0.0012 (8)
C9B0.0168 (11)0.0209 (12)0.0145 (10)0.0019 (9)0.0018 (8)0.0011 (8)
C10B0.0187 (11)0.0185 (12)0.0260 (12)0.0020 (9)0.0003 (9)−0.0020 (9)
C11B0.0184 (11)0.0246 (13)0.0262 (12)−0.0016 (10)0.0007 (9)−0.0012 (9)
C12B0.0169 (11)0.0306 (14)0.0216 (11)0.0041 (10)−0.0006 (9)0.0006 (10)
C13B0.0255 (12)0.0209 (13)0.0267 (12)0.0086 (10)−0.0011 (10)0.0016 (9)
C14B0.0228 (12)0.0191 (12)0.0232 (11)−0.0002 (9)0.0003 (9)0.0022 (9)
C15B0.0229 (12)0.0172 (12)0.0322 (13)0.0012 (10)−0.0023 (10)−0.0003 (9)
C16B0.0217 (12)0.0218 (13)0.0449 (15)0.0001 (10)−0.0013 (11)0.0010 (11)
C17B0.0169 (11)0.0228 (12)0.0259 (12)0.0029 (9)0.0018 (9)−0.0008 (9)
C18B0.0261 (12)0.0266 (13)0.0243 (12)0.0027 (10)−0.0003 (10)−0.0021 (10)
O1A—C8A1.232 (3)O1B—C8B1.221 (3)
O2A—N2A1.238 (2)O2B—N2B1.237 (2)
O3A—N2A1.225 (3)O3B—N2B1.229 (2)
O4A—C16A1.440 (3)O4B—C16B1.439 (3)
O4A—HO4A0.93 (4)O4B—HO4B1.03 (4)
O5A—C18A1.433 (3)O5B—C18B1.433 (3)
O5A—HO5A0.89 (3)O5B—HO5B0.90 (4)
N1A—C8A1.357 (3)N1B—C8B1.371 (3)
N1A—C3A1.419 (3)N1B—C3B1.410 (3)
N1A—H1A0.8600N1B—H1B0.8600
N2A—C5A1.471 (3)N2B—C5B1.478 (3)
N3A—C17A1.465 (3)N3B—C15B1.458 (3)
N3A—C7A1.472 (3)N3B—C17B1.458 (3)
N3A—C15A1.481 (3)N3B—C7B1.462 (3)
C1A—C2A1.394 (3)C1B—C6B1.391 (3)
C1A—C6A1.396 (3)C1B—C2B1.394 (3)
C1A—C7A1.506 (3)C1B—C7B1.514 (3)
C2A—C3A1.396 (3)C2B—C3B1.396 (3)
C2A—H2A0.9300C2B—H2B0.9300
C3A—C4A1.401 (3)C3B—C4B1.403 (3)
C4A—C5A1.387 (3)C4B—C5B1.388 (3)
C4A—H4A0.9300C4B—H4B0.9300
C5A—C6A1.381 (3)C5B—C6B1.380 (3)
C6A—H6A0.9300C6B—H6B0.9300
C7A—H7A10.9700C7B—H7B10.9700
C7A—H7A20.9700C7B—H7B20.9700
C8A—C9A1.503 (3)C8B—C9B1.503 (3)
C9A—C10A1.396 (3)C9B—C10B1.389 (3)
C9A—C14A1.398 (3)C9B—C14B1.399 (3)
C10A—C11A1.383 (3)C10B—C11B1.390 (3)
C10A—H10A0.9300C10B—H10B0.9300
C11A—C12A1.389 (3)C11B—C12B1.384 (3)
C11A—H11A0.9300C11B—H11B0.9300
C12A—C13A1.383 (3)C12B—C13B1.386 (3)
C12A—H12A0.9300C12B—H12B0.9300
C13A—C14A1.387 (3)C13B—C14B1.388 (3)
C13A—H13A0.9300C13B—H13B0.9300
C14A—H14A0.9300C14B—H14B0.9300
C15A—C16A1.515 (3)C15B—C16B1.522 (3)
C15A—H15A0.9700C15B—H15C0.9700
C15A—H15B0.9700C15B—H15D0.9700
C16A—H16A0.9700C16B—H16C0.9700
C16A—H16B0.9700C16B—H16D0.9700
C17A—C18A1.517 (3)C17B—C18B1.532 (3)
C17A—H17A0.9700C17B—H17C0.9700
C17A—H17B0.9700C17B—H17D0.9700
C18A—H18A0.9700C18B—H18C0.9700
C18A—H18B0.9700C18B—H18D0.9700
C16A—O4A—HO4A104 (2)C16B—O4B—HO4B112 (2)
C18A—O5A—HO5A110 (2)C18B—O5B—HO5B107 (2)
C8A—N1A—C3A127.10 (19)C8B—N1B—C3B126.87 (19)
C8A—N1A—H1A116.5C8B—N1B—H1B116.6
C3A—N1A—H1A116.5C3B—N1B—H1B116.6
O3A—N2A—O2A123.19 (19)O3B—N2B—O2B123.43 (19)
O3A—N2A—C5A119.14 (18)O3B—N2B—C5B118.97 (18)
O2A—N2A—C5A117.67 (19)O2B—N2B—C5B117.59 (19)
C17A—N3A—C7A112.73 (17)C15B—N3B—C17B115.88 (18)
C17A—N3A—C15A111.18 (17)C15B—N3B—C7B113.99 (18)
C7A—N3A—C15A109.31 (17)C17B—N3B—C7B114.08 (17)
C2A—C1A—C6A119.1 (2)C6B—C1B—C2B119.2 (2)
C2A—C1A—C7A120.9 (2)C6B—C1B—C7B121.68 (19)
C6A—C1A—C7A119.81 (19)C2B—C1B—C7B119.12 (19)
C1A—C2A—C3A121.4 (2)C1B—C2B—C3B121.9 (2)
C1A—C2A—H2A119.3C1B—C2B—H2B119.1
C3A—C2A—H2A119.3C3B—C2B—H2B119.1
C2A—C3A—C4A119.95 (19)C2B—C3B—C4B119.32 (19)
C2A—C3A—N1A116.78 (19)C2B—C3B—N1B117.30 (19)
C4A—C3A—N1A123.26 (19)C4B—C3B—N1B123.4 (2)
C5A—C4A—C3A117.0 (2)C5B—C4B—C3B117.2 (2)
C5A—C4A—H4A121.5C5B—C4B—H4B121.4
C3A—C4A—H4A121.5C3B—C4B—H4B121.4
C6A—C5A—C4A124.3 (2)C6B—C5B—C4B124.4 (2)
C6A—C5A—N2A118.23 (19)C6B—C5B—N2B118.33 (19)
C4A—C5A—N2A117.5 (2)C4B—C5B—N2B117.3 (2)
C5A—C6A—C1A118.21 (19)C5B—C6B—C1B118.1 (2)
C5A—C6A—H6A120.9C5B—C6B—H6B121.0
C1A—C6A—H6A120.9C1B—C6B—H6B121.0
N3A—C7A—C1A115.71 (17)N3B—C7B—C1B110.62 (17)
N3A—C7A—H7A1108.4N3B—C7B—H7B1109.5
C1A—C7A—H7A1108.4C1B—C7B—H7B1109.5
N3A—C7A—H7A2108.4N3B—C7B—H7B2109.5
C1A—C7A—H7A2108.4C1B—C7B—H7B2109.5
H7A1—C7A—H7A2107.4H7B1—C7B—H7B2108.1
O1A—C8A—N1A122.1 (2)O1B—C8B—N1B122.3 (2)
O1A—C8A—C9A120.6 (2)O1B—C8B—C9B121.2 (2)
N1A—C8A—C9A117.29 (19)N1B—C8B—C9B116.54 (19)
C10A—C9A—C14A118.73 (19)C10B—C9B—C14B119.3 (2)
C10A—C9A—C8A124.1 (2)C10B—C9B—C8B124.6 (2)
C14A—C9A—C8A117.1 (2)C14B—C9B—C8B116.1 (2)
C11A—C10A—C9A120.1 (2)C11B—C10B—C9B120.1 (2)
C11A—C10A—H10A119.9C11B—C10B—H10B119.9
C9A—C10A—H10A119.9C9B—C10B—H10B119.9
C10A—C11A—C12A120.8 (2)C12B—C11B—C10B120.4 (2)
C10A—C11A—H11A119.6C12B—C11B—H11B119.8
C12A—C11A—H11A119.6C10B—C11B—H11B119.8
C13A—C12A—C11A119.4 (2)C11B—C12B—C13B119.8 (2)
C13A—C12A—H12A120.3C11B—C12B—H12B120.1
C11A—C12A—H12A120.3C13B—C12B—H12B120.1
C12A—C13A—C14A120.3 (2)C12B—C13B—C14B120.1 (2)
C12A—C13A—H13A119.9C12B—C13B—H13B119.9
C14A—C13A—H13A119.9C14B—C13B—H13B119.9
C13A—C14A—C9A120.6 (2)C13B—C14B—C9B120.2 (2)
C13A—C14A—H14A119.7C13B—C14B—H14B119.9
C9A—C14A—H14A119.7C9B—C14B—H14B119.9
N3A—C15A—C16A111.96 (18)N3B—C15B—C16B110.18 (19)
N3A—C15A—H15A109.2N3B—C15B—H15C109.6
C16A—C15A—H15A109.2C16B—C15B—H15C109.6
N3A—C15A—H15B109.2N3B—C15B—H15D109.6
C16A—C15A—H15B109.2C16B—C15B—H15D109.6
H15A—C15A—H15B107.9H15C—C15B—H15D108.1
O4A—C16A—C15A111.69 (19)O4B—C16B—C15B110.8 (2)
O4A—C16A—H16A109.3O4B—C16B—H16C109.5
C15A—C16A—H16A109.3C15B—C16B—H16C109.5
O4A—C16A—H16B109.3O4B—C16B—H16D109.5
C15A—C16A—H16B109.3C15B—C16B—H16D109.5
H16A—C16A—H16B107.9H16C—C16B—H16D108.1
N3A—C17A—C18A115.01 (19)N3B—C17B—C18B110.30 (18)
N3A—C17A—H17A108.5N3B—C17B—H17C109.6
C18A—C17A—H17A108.5C18B—C17B—H17C109.6
N3A—C17A—H17B108.5N3B—C17B—H17D109.6
C18A—C17A—H17B108.5C18B—C17B—H17D109.6
H17A—C17A—H17B107.5H17C—C17B—H17D108.1
O5A—C18A—C17A113.93 (18)O5B—C18B—C17B109.84 (18)
O5A—C18A—H18A108.8O5B—C18B—H18C109.7
C17A—C18A—H18A108.8C17B—C18B—H18C109.7
O5A—C18A—H18B108.8O5B—C18B—H18D109.7
C17A—C18A—H18B108.8C17B—C18B—H18D109.7
H18A—C18A—H18B107.7H18C—C18B—H18D108.2
D—H···AD—HH···AD···AD—H···A
O4A—HO4A···O1Ai0.93 (4)1.82 (4)2.736 (2)168 (3)
O5A—HO5A···O4B0.89 (3)1.85 (3)2.738 (2)178 (3)
N1A—H1A···O5B0.862.273.089 (2)159
O5B—HO5B···O4B0.90 (4)2.30 (4)3.130 (3)153 (3)
O4B—HO4B···O4A1.03 (4)1.75 (4)2.762 (3)169 (3)
N1B—H1B···O5A0.862.493.332 (2)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4A—HO4A⋯O1Ai0.93 (4)1.82 (4)2.736 (2)168 (3)
O5A—HO5A⋯O4B0.89 (3)1.85 (3)2.738 (2)178 (3)
N1A—H1A⋯O5B0.862.273.089 (2)159
O5B—HO5B⋯O4B0.90 (4)2.30 (4)3.130 (3)153 (3)
O4B—HO4B⋯O4A1.03 (4)1.75 (4)2.762 (3)169 (3)
N1B—H1B⋯O5A0.862.493.332 (2)167

Symmetry code: (i) .

  11 in total

1.  Novel benzoyl nitrogen mustard derivatives of pyrazole analogues of distamycin A: synthesis and antileukemic activity.

Authors:  P G Baraldi; P Cozzi; C Geroni; N Mongelli; R Romagnoli; G Spalluto
Journal:  Bioorg Med Chem       Date:  1999-02       Impact factor: 3.641

Review 2.  Designed sequence-specific minor groove ligands.

Authors:  D E Wemmer
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

3.  STRUCTURE AND SYNTHESIS OF DISTAMYCIN A.

Authors:  F ARCAMONE; S PENCO; P OREZZI; V NICOLELLA; A PIRELLI
Journal:  Nature       Date:  1964-09-05       Impact factor: 49.962

4.  Minimization of a protein-DNA dimerizer.

Authors:  Ryan L Stafford; Hans-Dieter Arndt; Mary L Brezinski; Aseem Z Ansari; Peter B Dervan
Journal:  J Am Chem Soc       Date:  2007-02-10       Impact factor: 15.419

5.  Minor-groove binders are inhibitors of the catalytic activity of DNA gyrases.

Authors:  K Störl; J Störl; C Zimmer; J W Lown
Journal:  FEBS Lett       Date:  1993-02-08       Impact factor: 4.124

6.  Polybenzamide mustards: structure-activity relationships for DNA sequence-specific alkylation.

Authors:  P R Turner; L R Ferguson; W A Denny
Journal:  Anticancer Drug Des       Date:  1999-02

Review 7.  Hybrid molecules between distamycin A and active moieties of antitumor agents.

Authors:  Pier Giovanni Baraldi; Delia Preti; Francesca Fruttarolo; Mojgan Aghazadeh Tabrizi; Romeo Romagnoli
Journal:  Bioorg Med Chem       Date:  2006-11-01       Impact factor: 3.641

8.  A microgonotropen pentaaza pentabutylamine and its interactions with DNA.

Authors:  D Sengupta; A Blaskó; T C Bruice
Journal:  Bioorg Med Chem       Date:  1996-06       Impact factor: 3.641

Review 9.  DNA minor groove binders as potential antitumor and antimicrobial agents.

Authors:  Pier Giovanni Baraldi; Andrea Bovero; Francesca Fruttarolo; Delia Preti; Mojgan Aghazadeh Tabrizi; Maria Giovanna Pavani; Romeo Romagnoli
Journal:  Med Res Rev       Date:  2004-07       Impact factor: 12.944

10.  Synthesis, DNA interactions and biological activity of DNA minor groove targeted polybenzamide-linked nitrogen mustards.

Authors:  G J Atwell; B M Yaghi; P R Turner; M Boyd; C J O'Connor; L R Ferguson; B C Baguley; W A Denny
Journal:  Bioorg Med Chem       Date:  1995-06       Impact factor: 3.641

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