Literature DB >> 21202705

2-(Mesitylmethyl-sulfan-yl)pyridine N-oxide-18-crown-6 (2/1).

B Ravindran Durai Nayagam, Samuel Robinson Jebas, J Jebaraj Devadasan, Dieter Schollmeyer.   

Abstract

In the title compound, 2C(15)H(17)NOS·C(12)H(24)O(6), the asymmetric unit consists of one N-oxide derivative and one-half of the 18-crown-6 ether, which lies on an inversion centre. In the crown ether, the O-C-C-O torsion angles indicate a gauche conformation of the ethyl-eneoxy units, while the C-O-C-C torsion angles indicate planarity of these segments. In the N-oxide unit, the dihedral angle between the pyridine and benzene rings is 85.88 (12)°. The crystal packing is stabilized by weak C-H⋯O hydrogen bonds and C-H⋯π inter-actions.

Entities:  

Year:  2008        PMID: 21202705      PMCID: PMC2961412          DOI: 10.1107/S1600536808012403

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For the biological activities of N-oxide derivatives, see: Bovin et al.(1992 ▶); Katsuyuki et al.(1991 ▶); Leonard et al.(1955 ▶); Lobana & Bhatia (1989 ▶); Symons & West (1985 ▶). For related structures, see: Jebas et al.(2005 ▶); Ravindran Durai Nayagam et al. (2008 ▶).

Experimental

Crystal data

2C15H17NOS·C12H24O6 M = 783.02 Monoclinic, a = 8.050 (2) Å b = 18.1903 (18) Å c = 14.424 (4) Å β = 93.475 (14)° V = 2108.3 (8) Å3 Z = 2 Cu Kα radiation μ = 1.57 mm−1 T = 298 (2) K 0.26 × 0.22 × 0.19 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.95, T max = 0.99 (expected range = 0.712–0.742) 3999 measured reflections 3999 independent reflections 2846 reflections with I > 2σ(I) 3 standard reflections frequency: 60 min intensity decay: 3%

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.132 S = 1.02 3999 reflections 247 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: CAD-4 Software; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808012403/ci2589sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808012403/ci2589Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C15H17NOS·C12H24O6F000 = 840
Mr = 783.02Dx = 1.233 Mg m3
Monoclinic, P21/cCu Kα radiation λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 8.050 (2) Åθ = 26–41º
b = 18.1903 (18) ŵ = 1.57 mm1
c = 14.424 (4) ÅT = 298 (2) K
β = 93.475 (14)ºBlock, colourless
V = 2108.3 (8) Å30.26 × 0.22 × 0.19 mm
Z = 2
Enraf–Nonius CAD-4 diffractometerRint = 0
Monochromator: graphiteθmax = 70.1º
T = 298(2) Kθmin = 3.9º
ω/2θ scansh = 0→9
Absorption correction: ψ scan(North et al., 1968)k = 0→22
Tmin = 0.95, Tmax = 0.99l = −17→17
3999 measured reflections3 standard reflections
3999 independent reflections every 60 min
2846 reflections with I > 2σ(I) intensity decay: 3%
Refinement on F2H-atom parameters constrained
Least-squares matrix: full  w = 1/[σ2(Fo2) + (0.0563P)2 + 0.3138P] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.049(Δ/σ)max < 0.001
wR(F2) = 0.132Δρmax = 0.21 e Å3
S = 1.03Δρmin = −0.25 e Å3
3999 reflectionsExtinction correction: none
247 parameters
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.7135 (3)0.08450 (12)0.27904 (15)0.0427 (5)
C20.7560 (3)0.01163 (13)0.29202 (16)0.0478 (6)
H20.7162−0.01440.34150.057*
C30.8569 (3)−0.02246 (14)0.23183 (18)0.0571 (7)
H30.8865−0.07150.24110.069*
C40.9142 (4)0.01540 (15)0.1584 (2)0.0637 (7)
H40.9813−0.00770.11690.076*
C50.8717 (3)0.08740 (16)0.1468 (2)0.0637 (7)
H50.91060.11340.0970.076*
N60.7742 (3)0.12176 (11)0.20600 (15)0.0532 (5)
O70.7329 (3)0.19062 (10)0.19510 (16)0.0837 (7)
S80.58479 (9)0.13969 (3)0.34265 (5)0.0552 (2)
C90.5267 (3)0.07413 (12)0.43059 (17)0.0498 (6)
H9A0.45870.03530.4020.06*
H9B0.62560.05210.46060.06*
C100.4303 (3)0.11466 (12)0.50103 (16)0.0437 (5)
C110.5156 (3)0.15214 (12)0.57329 (17)0.0459 (5)
C120.4274 (3)0.19058 (13)0.63763 (17)0.0502 (6)
H120.48530.21640.68490.06*
C130.2556 (3)0.19120 (13)0.63282 (17)0.0494 (6)
C140.1730 (3)0.15298 (13)0.56197 (18)0.0510 (6)
H140.05730.15210.55910.061*
C150.2554 (3)0.11556 (13)0.49443 (17)0.0481 (6)
C160.7035 (3)0.15389 (16)0.5834 (2)0.0643 (7)
H16A0.73870.18980.62920.096*
H16B0.74660.16660.52490.096*
H16C0.74440.10630.60250.096*
C170.1631 (4)0.23629 (17)0.7009 (2)0.0729 (9)
H17A0.22880.23990.75850.109*
H17B0.0590.2130.71150.109*
H17C0.14280.28460.67590.109*
C180.1546 (4)0.07817 (17)0.4161 (2)0.0760 (9)
H18A0.16690.02580.42180.114*
H18B0.19350.09390.35770.114*
H18C0.03940.0910.4190.114*
C190.3730 (4)0.40558 (17)0.5469 (2)0.0732 (8)
H19A0.41340.42710.4910.088*
H19B0.4460.36520.56570.088*
O200.2098 (2)0.37888 (10)0.52814 (12)0.0592 (5)
C210.2021 (4)0.32669 (14)0.45558 (19)0.0601 (7)
H21A0.27240.28490.47270.072*
H21B0.24210.34850.39970.072*
C220.0265 (4)0.30186 (14)0.43774 (19)0.0604 (7)
H22A0.02230.25970.39660.072*
H22B−0.020.28770.49560.072*
O23−0.0651 (2)0.36052 (10)0.39661 (13)0.0635 (5)
C24−0.2386 (4)0.34718 (16)0.3842 (2)0.0701 (8)
H24A−0.28320.33470.44320.084*
H24B−0.25960.30640.34170.084*
C25−0.3196 (4)0.41482 (17)0.3459 (2)0.0710 (8)
H25A−0.2670.42980.29010.085*
H25B−0.43620.40510.32940.085*
O26−0.3054 (2)0.47147 (10)0.41232 (12)0.0593 (5)
C27−0.3763 (4)0.53832 (17)0.3785 (2)0.0751 (9)
H27A−0.49040.52980.35550.09*
H27B−0.31460.55620.32740.09*
U11U22U33U12U13U23
C10.0446 (12)0.0398 (11)0.0441 (12)−0.0009 (10)0.0063 (10)0.0024 (10)
C20.0595 (15)0.0396 (12)0.0446 (13)0.0021 (11)0.0072 (11)0.0024 (10)
C30.0721 (18)0.0430 (13)0.0575 (16)0.0097 (12)0.0141 (13)−0.0013 (11)
C40.0701 (18)0.0579 (16)0.0655 (18)0.0079 (14)0.0232 (14)−0.0043 (14)
C50.0668 (17)0.0661 (17)0.0609 (16)0.0010 (14)0.0273 (14)0.0083 (14)
N60.0555 (12)0.0434 (11)0.0623 (13)0.0026 (9)0.0160 (10)0.0114 (9)
O70.1030 (17)0.0471 (11)0.1058 (17)0.0174 (11)0.0451 (13)0.0281 (11)
S80.0691 (4)0.0367 (3)0.0622 (4)0.0080 (3)0.0234 (3)0.0054 (3)
C90.0619 (15)0.0363 (12)0.0526 (14)0.0007 (11)0.0147 (12)0.0009 (10)
C100.0471 (13)0.0355 (11)0.0494 (13)0.0004 (9)0.0103 (10)0.0027 (10)
C110.0416 (12)0.0413 (12)0.0554 (14)0.0010 (10)0.0094 (10)0.0009 (10)
C120.0544 (15)0.0465 (13)0.0499 (14)0.0031 (11)0.0050 (11)−0.0025 (11)
C130.0551 (15)0.0455 (13)0.0494 (14)0.0106 (11)0.0180 (11)0.0104 (11)
C140.0405 (12)0.0496 (14)0.0639 (16)0.0039 (11)0.0109 (11)0.0135 (12)
C150.0473 (13)0.0403 (12)0.0565 (14)−0.0030 (10)0.0026 (11)0.0067 (11)
C160.0475 (15)0.0646 (17)0.0806 (19)0.0003 (13)0.0036 (13)−0.0121 (15)
C170.084 (2)0.0733 (19)0.0652 (18)0.0222 (16)0.0339 (16)0.0082 (15)
C180.0627 (18)0.073 (2)0.090 (2)−0.0042 (15)−0.0110 (16)−0.0117 (18)
C190.0583 (17)0.0603 (18)0.101 (2)0.0089 (14)0.0081 (16)0.0113 (17)
O200.0580 (11)0.0578 (11)0.0633 (11)0.0006 (8)0.0147 (9)−0.0013 (9)
C210.0724 (18)0.0469 (14)0.0634 (17)0.0101 (13)0.0246 (14)0.0093 (12)
C220.082 (2)0.0395 (13)0.0613 (16)0.0011 (13)0.0222 (14)0.0054 (12)
O230.0668 (12)0.0476 (10)0.0768 (13)−0.0066 (9)0.0089 (10)0.0110 (9)
C240.073 (2)0.0585 (17)0.079 (2)−0.0173 (15)0.0043 (16)−0.0082 (15)
C250.0691 (19)0.0725 (19)0.0694 (19)−0.0102 (16)−0.0117 (15)−0.0074 (16)
O260.0608 (11)0.0588 (11)0.0574 (11)0.0024 (9)−0.0048 (9)0.0023 (9)
C270.0657 (19)0.072 (2)0.085 (2)0.0026 (15)−0.0183 (16)0.0099 (17)
C1—N61.368 (3)C16—H16C0.96
C1—C21.379 (3)C17—H17A0.96
C1—S81.743 (2)C17—H17B0.96
C2—C31.373 (3)C17—H17C0.96
C2—H20.93C18—H18A0.96
C3—C41.367 (4)C18—H18B0.96
C3—H30.93C18—H18C0.96
C4—C51.362 (4)C19—O201.411 (3)
C4—H40.93C19—C27i1.482 (4)
C5—N61.348 (3)C19—H19A0.97
C5—H50.93C19—H19B0.97
N6—O71.303 (3)O20—C211.412 (3)
S8—C91.823 (2)C21—C221.491 (4)
C9—C101.508 (3)C21—H21A0.97
C9—H9A0.97C21—H21B0.97
C9—H9B0.97C22—O231.408 (3)
C10—C111.392 (3)C22—H22A0.97
C10—C151.406 (3)C22—H22B0.97
C11—C121.391 (3)O23—C241.418 (3)
C11—C161.510 (3)C24—C251.483 (4)
C12—C131.380 (3)C24—H24A0.97
C12—H120.93C24—H24B0.97
C13—C141.374 (4)C25—O261.407 (3)
C13—C171.509 (3)C25—H25A0.97
C14—C151.389 (3)C25—H25B0.97
C14—H140.93O26—C271.417 (3)
C15—C181.512 (4)C27—C19i1.482 (4)
C16—H16A0.96C27—H27A0.97
C16—H16B0.96C27—H27B0.97
N6—C1—C2118.9 (2)C13—C17—H17B109.5
N6—C1—S8111.80 (17)H17A—C17—H17B109.5
C2—C1—S8129.24 (18)C13—C17—H17C109.5
C3—C2—C1120.0 (2)H17A—C17—H17C109.5
C3—C2—H2120H17B—C17—H17C109.5
C1—C2—H2120C15—C18—H18A109.5
C4—C3—C2120.2 (2)C15—C18—H18B109.5
C4—C3—H3119.9H18A—C18—H18B109.5
C2—C3—H3119.9C15—C18—H18C109.5
C5—C4—C3119.1 (2)H18A—C18—H18C109.5
C5—C4—H4120.5H18B—C18—H18C109.5
C3—C4—H4120.5O20—C19—C27i110.6 (2)
N6—C5—C4121.3 (2)O20—C19—H19A109.5
N6—C5—H5119.4C27i—C19—H19A109.5
C4—C5—H5119.4O20—C19—H19B109.5
O7—N6—C5121.5 (2)C27i—C19—H19B109.5
O7—N6—C1118.0 (2)H19A—C19—H19B108.1
C5—N6—C1120.5 (2)C19—O20—C21111.8 (2)
C1—S8—C9100.10 (11)O20—C21—C22109.3 (2)
C10—C9—S8108.26 (15)O20—C21—H21A109.8
C10—C9—H9A110C22—C21—H21A109.8
S8—C9—H9A110O20—C21—H21B109.8
C10—C9—H9B110C22—C21—H21B109.8
S8—C9—H9B110H21A—C21—H21B108.3
H9A—C9—H9B108.4O23—C22—C21108.1 (2)
C11—C10—C15119.5 (2)O23—C22—H22A110.1
C11—C10—C9119.6 (2)C21—C22—H22A110.1
C15—C10—C9120.9 (2)O23—C22—H22B110.1
C12—C11—C10119.8 (2)C21—C22—H22B110.1
C12—C11—C16118.3 (2)H22A—C22—H22B108.4
C10—C11—C16121.9 (2)C22—O23—C24114.2 (2)
C13—C12—C11121.4 (2)O23—C24—C25108.2 (2)
C13—C12—H12119.3O23—C24—H24A110.1
C11—C12—H12119.3C25—C24—H24A110.1
C14—C13—C12118.1 (2)O23—C24—H24B110.1
C14—C13—C17121.6 (2)C25—C24—H24B110.1
C12—C13—C17120.2 (3)H24A—C24—H24B108.4
C13—C14—C15122.7 (2)O26—C25—C24109.7 (2)
C13—C14—H14118.7O26—C25—H25A109.7
C15—C14—H14118.7C24—C25—H25A109.7
C14—C15—C10118.5 (2)O26—C25—H25B109.7
C14—C15—C18119.1 (2)C24—C25—H25B109.7
C10—C15—C18122.4 (2)H25A—C25—H25B108.2
C11—C16—H16A109.5C25—O26—C27112.3 (2)
C11—C16—H16B109.5O26—C27—C19i110.6 (2)
H16A—C16—H16B109.5O26—C27—H27A109.5
C11—C16—H16C109.5C19i—C27—H27A109.5
H16A—C16—H16C109.5O26—C27—H27B109.5
H16B—C16—H16C109.5C19i—C27—H27B109.5
C13—C17—H17A109.5H27A—C27—H27B108.1
N6—C1—C2—C3−0.3 (4)C10—C11—C12—C131.5 (4)
S8—C1—C2—C3178.2 (2)C16—C11—C12—C13−179.8 (2)
C1—C2—C3—C4−0.7 (4)C11—C12—C13—C14−0.4 (4)
C2—C3—C4—C51.0 (4)C11—C12—C13—C17−177.1 (2)
C3—C4—C5—N6−0.2 (5)C12—C13—C14—C15−1.6 (4)
C4—C5—N6—O7−179.9 (3)C17—C13—C14—C15175.1 (2)
C4—C5—N6—C1−0.8 (4)C13—C14—C15—C102.4 (3)
C2—C1—N6—O7−179.8 (2)C13—C14—C15—C18−176.9 (2)
S8—C1—N6—O71.4 (3)C11—C10—C15—C14−1.3 (3)
C2—C1—N6—C51.1 (4)C9—C10—C15—C14179.2 (2)
S8—C1—N6—C5−177.7 (2)C11—C10—C15—C18178.0 (2)
N6—C1—S8—C9179.41 (18)C9—C10—C15—C18−1.6 (4)
C2—C1—S8—C90.8 (3)C27i—C19—O20—C21178.4 (2)
C1—S8—C9—C10172.97 (17)C19—O20—C21—C22−178.8 (2)
S8—C9—C10—C11−83.8 (2)O20—C21—C22—O2370.4 (3)
S8—C9—C10—C1595.8 (2)C21—C22—O23—C24−174.0 (2)
C15—C10—C11—C12−0.6 (3)C22—O23—C24—C25176.6 (2)
C9—C10—C11—C12179.0 (2)O23—C24—C25—O26−66.6 (3)
C15—C10—C11—C16−179.3 (2)C24—C25—O26—C27178.2 (3)
C9—C10—C11—C160.3 (3)C25—O26—C27—C19i174.7 (2)
D—H···AD—HH···AD···AD—H···A
C4—H4···O23ii0.932.503.187 (3)131
C16—H16A···O7iii0.962.383.257 (4)152
C27—H27A···Cg1iv0.972.783.723 (4)163
C21—H21A···Cg20.972.803.693 (3)153
C2—H2···Cg2v0.932.903.732 (3)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O23i0.932.503.187 (3)131
C16—H16A⋯O7ii0.962.383.257 (4)152
C27—H27ACg1iii0.972.783.723 (4)163
C21—H21ACg20.972.803.693 (3)153
C2—H2⋯Cg2iv0.932.903.732 (3)150

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg1 and Cg2 are the centroids of the N6/C1–C5 and C10–C15 rings, respectively.

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,2'-[2,3,5,6-Tetra-methyl-p-phenyl-ene-bis(methyl-enethio)]bis-(pyridine N-oxide).

Authors:  B Ravindran Durai Nayagam; Samuel Robinson Jebas; Selvarathi Grace; Dieter Schollmeyer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-09
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.