Literature DB >> 21202693

4-(4-Fluoro-phen-yl)-6-(2-fur-yl)pyrimidin-2-amine.

Mujahid Hussain Bukhari, Hamid Latif Siddiqui, Muhammad Ashraf Chaudhary, Tanvir Hussain, Masood Parvez.   

Abstract

Mol-ecules of the title compound, C(14)H(10)FN(3)O, are essentially planar and in the crystal structure they form dimers via hydrogen bonds, involving pyrimidinyl N atoms and amino H atoms, about inversion centers. The centroids of the furyl and pyrimidinyl rings are separated by 3.489 (2)Å, indicating π-π stacking inter-actions.

Entities:  

Year:  2008        PMID: 21202693      PMCID: PMC2961462          DOI: 10.1107/S1600536808012294

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Colorado, & Brodbelt (1996 ▶); Bojarski et al. (1985 ▶); Fun et al. (2006 ▶); Gallagher et al. (2004 ▶); Hueso et al. (2003 ▶); Miranda et al. (2006 ▶); Varga et al. (2003 ▶).; Miyazaki et al. (2005 ▶).

Experimental

Crystal data

C14H10FN3O M = 255.25 Monoclinic, a = 11.629 (4) Å b = 5.992 (3) Å c = 16.389 (6) Å β = 97.69 (2)° V = 1131.7 (8) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 173 (2) K 0.24 × 0.20 × 0.16 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1997 ▶) T min = 0.974, T max = 0.983 4617 measured reflections 2567 independent reflections 1935 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.123 S = 1.03 2567 reflections 179 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.21 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808012294/lh2621sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808012294/lh2621Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H10FN3OF000 = 528
Mr = 255.25Dx = 1.498 Mg m3
Monoclinic, P21/cMelting point = 513–515 K
Hall symbol: -P 2ybcMo Kα radiation λ = 0.71073 Å
a = 11.629 (4) ÅCell parameters from 4617 reflections
b = 5.992 (3) Åθ = 3.6–27.5º
c = 16.389 (6) ŵ = 0.11 mm1
β = 97.69 (2)ºT = 173 (2) K
V = 1131.7 (8) Å3Prism, colorless
Z = 40.24 × 0.20 × 0.16 mm
Nonius KappaCCD diffractometer2567 independent reflections
Radiation source: fine-focus sealed tube1935 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.033
T = 173(2) Kθmax = 27.5º
ω and φ scansθmin = 3.6º
Absorption correction: multi-scan(SORTAV; Blessing, 1997)h = −14→15
Tmin = 0.974, Tmax = 0.983k = −7→7
4617 measured reflectionsl = −21→21
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.044  w = 1/[σ2(Fo2) + (0.061P)2 + 0.4P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.123(Δ/σ)max < 0.001
S = 1.03Δρmax = 0.25 e Å3
2567 reflectionsΔρmin = −0.21 e Å3
179 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.025 (6)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F11.25524 (8)−0.3651 (2)0.33665 (7)0.0417 (3)
N10.78951 (10)−0.1133 (2)0.47173 (8)0.0212 (3)
N20.63490 (10)0.1576 (2)0.46105 (8)0.0214 (3)
N30.64102 (12)−0.1403 (3)0.55076 (8)0.0260 (3)
H310.5641 (17)−0.128 (3)0.5524 (11)0.031*
H320.6685 (16)−0.273 (4)0.5618 (11)0.031*
O10.68164 (9)0.57384 (19)0.30924 (7)0.0252 (3)
C10.94793 (12)−0.0974 (3)0.39086 (9)0.0209 (3)
C20.98310 (14)−0.3102 (3)0.41767 (10)0.0269 (4)
H20.9353−0.39480.44880.032*
C31.08664 (14)−0.4012 (3)0.39983 (10)0.0302 (4)
H31.1108−0.54560.41910.036*
C41.15313 (13)−0.2769 (3)0.35368 (10)0.0282 (4)
C51.12145 (14)−0.0680 (3)0.32395 (10)0.0280 (4)
H51.16900.01300.29150.034*
C61.01768 (13)0.0212 (3)0.34272 (10)0.0256 (4)
H60.99390.16490.32250.031*
C70.83900 (12)−0.0007 (3)0.41450 (9)0.0203 (3)
C80.79028 (13)0.1937 (3)0.37932 (9)0.0225 (3)
H80.82610.27370.33950.027*
C90.68719 (12)0.2674 (3)0.40437 (9)0.0200 (3)
C100.68960 (12)−0.0280 (3)0.49192 (9)0.0208 (3)
C110.62985 (12)0.4679 (3)0.36912 (9)0.0207 (3)
C120.53195 (13)0.5788 (3)0.38160 (10)0.0242 (4)
H120.48030.54060.41960.029*
C130.52194 (14)0.7633 (3)0.32661 (10)0.0279 (4)
H130.46200.87220.32060.033*
C140.61369 (14)0.7542 (3)0.28479 (10)0.0279 (4)
H140.62910.85840.24400.034*
U11U22U33U12U13U23
F10.0259 (5)0.0527 (7)0.0494 (6)0.0132 (5)0.0156 (4)−0.0045 (5)
N10.0169 (6)0.0245 (7)0.0224 (6)0.0016 (5)0.0036 (5)0.0019 (5)
N20.0184 (6)0.0232 (7)0.0229 (6)0.0012 (5)0.0041 (5)−0.0007 (5)
N30.0201 (7)0.0296 (8)0.0296 (7)0.0035 (6)0.0085 (5)0.0081 (6)
O10.0253 (6)0.0242 (6)0.0270 (6)0.0029 (5)0.0073 (5)0.0040 (5)
C10.0165 (7)0.0256 (8)0.0208 (7)0.0008 (6)0.0031 (6)−0.0022 (6)
C20.0242 (8)0.0277 (9)0.0300 (8)0.0039 (7)0.0078 (6)0.0032 (7)
C30.0280 (8)0.0300 (9)0.0330 (9)0.0095 (7)0.0063 (7)0.0016 (7)
C40.0185 (7)0.0379 (10)0.0285 (8)0.0071 (7)0.0048 (6)−0.0080 (7)
C50.0233 (8)0.0341 (10)0.0283 (8)−0.0024 (7)0.0100 (6)−0.0026 (7)
C60.0230 (7)0.0270 (8)0.0272 (8)0.0025 (7)0.0052 (6)0.0006 (7)
C70.0178 (7)0.0225 (8)0.0205 (7)−0.0013 (6)0.0020 (6)−0.0018 (6)
C80.0201 (7)0.0245 (8)0.0236 (7)0.0005 (6)0.0052 (6)0.0023 (6)
C90.0185 (7)0.0210 (8)0.0203 (7)−0.0004 (6)0.0013 (6)−0.0023 (6)
C100.0179 (7)0.0238 (8)0.0206 (7)−0.0004 (6)0.0030 (6)−0.0012 (6)
C110.0198 (7)0.0218 (8)0.0207 (7)−0.0007 (6)0.0033 (6)−0.0015 (6)
C120.0211 (7)0.0243 (8)0.0272 (8)0.0010 (6)0.0036 (6)−0.0025 (7)
C130.0271 (8)0.0228 (8)0.0324 (9)0.0047 (7)−0.0008 (7)−0.0002 (7)
C140.0328 (8)0.0216 (8)0.0283 (8)0.0035 (7)0.0004 (7)0.0051 (7)
F1—C41.3623 (18)C3—H30.9500
N1—C71.346 (2)C4—C51.376 (3)
N1—C101.3503 (19)C5—C61.391 (2)
N2—C101.346 (2)C5—H50.9500
N2—C91.348 (2)C6—H60.9500
N3—C101.359 (2)C7—C81.387 (2)
N3—H310.902 (19)C8—C91.390 (2)
N3—H320.87 (2)C8—H80.9500
O1—C141.3667 (19)C9—C111.456 (2)
O1—C111.3736 (18)C11—C121.357 (2)
C1—C21.392 (2)C12—C131.421 (2)
C1—C61.399 (2)C12—H120.9500
C1—C71.491 (2)C13—C141.344 (2)
C2—C31.388 (2)C13—H130.9500
C2—H20.9500C14—H140.9500
C3—C41.372 (2)
C7—N1—C10116.33 (13)N1—C7—C8121.46 (14)
C10—N2—C9115.37 (12)N1—C7—C1116.36 (14)
C10—N3—H31119.2 (12)C8—C7—C1122.18 (14)
C10—N3—H32115.2 (12)C7—C8—C9117.68 (14)
H31—N3—H32114.2 (17)C7—C8—H8121.2
C14—O1—C11106.44 (12)C9—C8—H8121.2
C2—C1—C6118.38 (14)N2—C9—C8122.34 (14)
C2—C1—C7119.86 (14)N2—C9—C11116.84 (13)
C6—C1—C7121.76 (14)C8—C9—C11120.82 (14)
C3—C2—C1121.33 (16)N2—C10—N1126.82 (14)
C3—C2—H2119.3N2—C10—N3117.09 (13)
C1—C2—H2119.3N1—C10—N3116.08 (14)
C4—C3—C2118.14 (16)C12—C11—O1109.78 (14)
C4—C3—H3120.9C12—C11—C9133.89 (15)
C2—C3—H3120.9O1—C11—C9116.32 (13)
F1—C4—C3118.27 (16)C11—C12—C13106.53 (15)
F1—C4—C5118.67 (15)C11—C12—H12126.7
C3—C4—C5123.06 (15)C13—C12—H12126.7
C4—C5—C6118.06 (15)C14—C13—C12106.75 (14)
C4—C5—H5121.0C14—C13—H13126.6
C6—C5—H5121.0C12—C13—H13126.6
C5—C6—C1121.00 (16)C13—C14—O1110.49 (14)
C5—C6—H6119.5C13—C14—H14124.8
C1—C6—H6119.5O1—C14—H14124.8
C6—C1—C2—C32.2 (2)C10—N2—C9—C11179.48 (13)
C7—C1—C2—C3−177.11 (14)C7—C8—C9—N20.3 (2)
C1—C2—C3—C4−1.0 (2)C7—C8—C9—C11−178.93 (13)
C2—C3—C4—F1179.47 (14)C9—N2—C10—N1−0.3 (2)
C2—C3—C4—C5−0.5 (2)C9—N2—C10—N3178.41 (13)
F1—C4—C5—C6−179.16 (14)C7—N1—C10—N2−0.3 (2)
C3—C4—C5—C60.8 (2)C7—N1—C10—N3−178.93 (13)
C4—C5—C6—C10.4 (2)C14—O1—C11—C120.17 (17)
C2—C1—C6—C5−1.8 (2)C14—O1—C11—C9179.54 (13)
C7—C1—C6—C5177.43 (14)N2—C9—C11—C121.5 (2)
C10—N1—C7—C80.8 (2)C8—C9—C11—C12−179.20 (16)
C10—N1—C7—C1−178.73 (12)N2—C9—C11—O1−177.67 (13)
C2—C1—C7—N110.0 (2)C8—C9—C11—O11.6 (2)
C6—C1—C7—N1−169.28 (13)O1—C11—C12—C130.07 (17)
C2—C1—C7—C8−169.55 (14)C9—C11—C12—C13−179.15 (16)
C6—C1—C7—C811.2 (2)C11—C12—C13—C14−0.29 (18)
N1—C7—C8—C9−0.9 (2)C12—C13—C14—O10.40 (18)
C1—C7—C8—C9178.66 (13)C11—O1—C14—C13−0.36 (17)
C10—N2—C9—C80.2 (2)
D—H···AD—HH···AD···AD—H···A
N3—H31···N2i0.90 (2)2.30 (2)3.190 (2)168 (2)
C5—H5···O1ii0.952.583.474 (2)157
C2—H2···N10.952.462.789 (2)100
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H31⋯N2i0.90 (2)2.30 (2)3.190 (2)168 (2)
C5—H5⋯O1ii0.952.583.474 (2)157
C2—H2⋯N10.952.462.789 (2)100

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Novel 4-amino-furo[2,3-d]pyrimidines as Tie-2 and VEGFR2 dual inhibitors.

Authors:  Yasushi Miyazaki; Shinichiro Matsunaga; Jun Tang; Yutaka Maeda; Masato Nakano; Rocher J Philippe; Megumi Shibahara; Wei Liu; Hideyuki Sato; Liping Wang; Robert T Nolte
Journal:  Bioorg Med Chem Lett       Date:  2005-05-02       Impact factor: 2.823

3.  Synthesis and spectroscopic studies on the new Schiff base derived from the 1:2 condensation of 2,6-diformyl-4-methylphenol with 5-aminouracil (BDF5AU) and its transition metal complexes. Influence on biologically active peptides-regulating aminopeptidases.

Authors:  Francisco Hueso-Ureña; Nuria A Illán-Cabeza; Miguel N Moreno-Carretero; José M Martínez-Martos; María J Ramírez-Expósito
Journal:  J Inorg Biochem       Date:  2003-04-01       Impact factor: 4.155

4.  N-H.N hydrogen bonding in 4,6-diphenyl-2-pyrimidinylamine isolated from the plant Justicia secunda (Acanthaceae).

Authors:  John F Gallagher; Shyamaprosad Goswami; Baidyanath Chatterjee; Subrata Jana; Kalyani Dutta
Journal:  Acta Crystallogr C       Date:  2004-03-11       Impact factor: 1.172

5.  Borinium adduct ion formation with barbiturates in a quadrupole ion-trap mass spectrometer.

Authors:  A Colorado; J Brodbelt
Journal:  J Mass Spectrom       Date:  1996-04       Impact factor: 1.982

  5 in total
  2 in total

1.  4,6-Dichloro-5-methoxy-pyrimidine.

Authors:  Hoong-Kun Fun; Chin Sing Yeap; C S Chidan Kumar; H S Yathirajan; M S Siddegowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-20

2.  4-(4-Bromo-phen-yl)-6-(4-chloro-phen-yl)-pyrimidin-2-ylamine.

Authors:  Mujahid Hussain Bukhari; Hamid Latif Siddiqui; Naveed Ahmad; Waseeq Ahmad Siddiqui; Masood Parvez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-28
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.