| Literature DB >> 21202663 |
Dian-Qing Wu, Hui-Bin Zhang, Bao-Min Xi.
Abstract
The title compound, C(21)H(28)N(2)O(5), has two intra-molecular N-H⋯O hydrogen bonds. Inter-molecular N-H⋯O hydrogen bonds [graph-set motif R(2) (2)(8)] give rise to a dimer. Weak N-H⋯N hydrogen bonds between neighboring dimers further extend the crystal structure, which exhibits an infinite chain motif.Entities:
Year: 2008 PMID: 21202663 PMCID: PMC2961427 DOI: 10.1107/S1600536808015134
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H28N2O5 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2279 reflections |
| θ = 2.3–28.0º | |
| µ = 0.09 mm−1 | |
| β = 95.370 (3)º | Block, colorless |
| 0.21 × 0.18 × 0.17 mm | |
| Bruker APEXII area-detector diffractometer | 1966 reflections with |
| Radiation source: fine-focus sealed tube | |
| Monochromator: graphite | θmax = 25.2º |
| θmin = 2.3º | |
| φ and ω scans | |
| Absorption correction: none | |
| 26019 measured reflections | |
| 3909 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max < 0.001 | |
| 3909 reflections | Δρmax = 0.24 e Å−3 |
| 260 parameters | Δρmin = −0.22 e Å−3 |
| 1 restraint | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 1.0849 (4) | 0.9275 (3) | 0.68939 (10) | 0.0707 (8) | |
| C2 | 1.0775 (4) | 0.8967 (3) | 0.73403 (10) | 0.0730 (9) | |
| H2 | 1.0012 | 0.8264 | 0.7419 | 0.088* | |
| C3 | 1.1788 (4) | 0.9662 (3) | 0.76742 (11) | 0.0768 (9) | |
| C4 | 1.2923 (4) | 1.0728 (3) | 0.75616 (13) | 0.0802 (9) | |
| C5 | 1.3002 (4) | 1.1052 (4) | 0.71190 (14) | 0.0894 (10) | |
| H5 | 1.3752 | 1.1762 | 0.7038 | 0.107* | |
| C6 | 1.1968 (5) | 1.0324 (4) | 0.67897 (12) | 0.0854 (10) | |
| H6 | 1.2040 | 1.0558 | 0.6491 | 0.102* | |
| C7 | 0.2048 (4) | 0.3654 (3) | 0.58051 (10) | 0.0731 (9) | |
| H7 | 0.1768 | 0.2941 | 0.6002 | 0.088* | |
| C8 | 0.2697 (4) | 0.4909 (4) | 0.59783 (10) | 0.0786 (9) | |
| H8 | 0.2876 | 0.5034 | 0.6287 | 0.094* | |
| C9 | 0.3086 (4) | 0.5986 (3) | 0.56951 (10) | 0.0652 (8) | |
| C10 | 0.2844 (3) | 0.5786 (3) | 0.52359 (9) | 0.0637 (8) | |
| H10 | 0.3093 | 0.6521 | 0.5043 | 0.076* | |
| C11 | 0.2230 (3) | 0.4489 (3) | 0.50650 (9) | 0.0571 (7) | |
| C12 | 0.1785 (3) | 0.3388 (3) | 0.53488 (9) | 0.0604 (7) | |
| C13 | 1.0809 (9) | 0.8210 (6) | 0.82400 (14) | 0.194 (3) | |
| H13A | 0.9600 | 0.8442 | 0.8191 | 0.292* | |
| H13B | 1.1095 | 0.7984 | 0.8550 | 0.292* | |
| H13C | 1.1054 | 0.7400 | 0.8059 | 0.292* | |
| C14 | 0.4230 (4) | 0.8365 (3) | 0.56233 (10) | 0.0785 (9) | |
| H14A | 0.3207 | 0.8859 | 0.5491 | 0.094* | |
| H14B | 0.4874 | 0.8014 | 0.5384 | 0.094* | |
| C15 | 0.5335 (4) | 0.9363 (3) | 0.59209 (10) | 0.0752 (9) | |
| H15 | 0.4726 | 0.9616 | 0.6182 | 0.090* | |
| C16 | 0.8086 (4) | 0.9358 (3) | 0.63960 (10) | 0.0766 (9) | |
| H16A | 0.7475 | 0.9578 | 0.6655 | 0.092* | |
| H16B | 0.8422 | 1.0254 | 0.6266 | 0.092* | |
| C17 | 0.9687 (4) | 0.8500 (4) | 0.65416 (10) | 0.0833 (10) | |
| H17A | 1.0321 | 0.8313 | 0.6284 | 0.100* | |
| H17B | 0.9348 | 0.7588 | 0.6660 | 0.100* | |
| C18 | 1.5228 (7) | 1.2293 (6) | 0.78212 (16) | 0.171 (2) | |
| H18A | 1.5999 | 1.1812 | 0.7638 | 0.257* | |
| H18B | 1.5858 | 1.2594 | 0.8096 | 0.257* | |
| H18C | 1.4738 | 1.3113 | 0.7664 | 0.257* | |
| C19 | 0.5701 (5) | 1.0702 (3) | 0.56651 (13) | 0.1053 (12) | |
| H19A | 0.6320 | 1.1371 | 0.5863 | 0.158* | |
| H19B | 0.4628 | 1.1121 | 0.5544 | 0.158* | |
| H19C | 0.6388 | 1.0465 | 0.5425 | 0.158* | |
| C20 | 0.2483 (4) | 0.5301 (3) | 0.43139 (9) | 0.0771 (9) | |
| H20A | 0.1776 | 0.6133 | 0.4343 | 0.116* | |
| H20B | 0.2303 | 0.4945 | 0.4013 | 0.116* | |
| H20C | 0.3679 | 0.5551 | 0.4381 | 0.116* | |
| C21 | 0.1018 (4) | 0.1977 (3) | 0.52065 (11) | 0.0676 (8) | |
| N1 | 0.6938 (3) | 0.8582 (2) | 0.60697 (8) | 0.0666 (7) | |
| H1 | 0.662 (4) | 0.780 (2) | 0.6217 (8) | 0.080* | |
| N2 | 0.0991 (3) | 0.1560 (3) | 0.47879 (8) | 0.0817 (8) | |
| H2A | 0.0548 | 0.0747 | 0.4708 | 0.098* | |
| H2B | 0.1417 | 0.2102 | 0.4594 | 0.098* | |
| O1 | 0.3744 (3) | 0.7205 (2) | 0.58938 (6) | 0.0838 (7) | |
| O2 | 1.1798 (4) | 0.9383 (3) | 0.81226 (8) | 0.1191 (10) | |
| O3 | 1.3892 (3) | 1.1353 (3) | 0.79165 (9) | 0.1160 (9) | |
| O4 | 0.2023 (3) | 0.4228 (2) | 0.46171 (6) | 0.0753 (6) | |
| O5 | 0.0413 (4) | 0.1217 (2) | 0.54918 (8) | 0.1049 (9) |
| C1 | 0.063 (2) | 0.075 (2) | 0.073 (2) | 0.0073 (17) | 0.0014 (16) | 0.0039 (17) |
| C2 | 0.065 (2) | 0.071 (2) | 0.082 (2) | −0.0139 (16) | 0.0032 (16) | −0.0044 (17) |
| C3 | 0.079 (2) | 0.076 (2) | 0.076 (2) | −0.0129 (19) | 0.0067 (18) | −0.0039 (17) |
| C4 | 0.072 (2) | 0.070 (2) | 0.099 (3) | −0.0126 (18) | 0.0079 (19) | −0.011 (2) |
| C5 | 0.073 (2) | 0.077 (2) | 0.120 (3) | −0.0097 (19) | 0.019 (2) | 0.015 (2) |
| C6 | 0.081 (2) | 0.090 (3) | 0.086 (2) | 0.011 (2) | 0.012 (2) | 0.018 (2) |
| C7 | 0.082 (2) | 0.070 (2) | 0.069 (2) | −0.0096 (18) | 0.0146 (16) | 0.0086 (16) |
| C8 | 0.091 (2) | 0.083 (2) | 0.0625 (18) | −0.0174 (19) | 0.0095 (17) | 0.0007 (18) |
| C9 | 0.0610 (19) | 0.0651 (19) | 0.069 (2) | −0.0088 (15) | 0.0022 (15) | −0.0018 (16) |
| C10 | 0.0598 (19) | 0.0609 (18) | 0.069 (2) | −0.0022 (15) | −0.0005 (14) | 0.0091 (15) |
| C11 | 0.0533 (17) | 0.0567 (17) | 0.0608 (18) | 0.0012 (14) | 0.0018 (13) | 0.0001 (14) |
| C12 | 0.0518 (17) | 0.0616 (18) | 0.0688 (19) | −0.0031 (14) | 0.0103 (14) | 0.0015 (15) |
| C13 | 0.327 (8) | 0.172 (5) | 0.088 (3) | −0.131 (6) | 0.039 (4) | −0.003 (3) |
| C14 | 0.081 (2) | 0.066 (2) | 0.085 (2) | −0.0101 (17) | −0.0076 (17) | 0.0068 (17) |
| C15 | 0.069 (2) | 0.0654 (19) | 0.088 (2) | −0.0055 (17) | −0.0093 (17) | 0.0026 (17) |
| C16 | 0.074 (2) | 0.075 (2) | 0.079 (2) | −0.0001 (17) | −0.0057 (17) | −0.0088 (16) |
| C17 | 0.083 (2) | 0.087 (2) | 0.077 (2) | 0.0133 (19) | −0.0053 (18) | −0.0072 (17) |
| C18 | 0.145 (4) | 0.178 (5) | 0.192 (5) | −0.105 (4) | 0.023 (4) | −0.035 (4) |
| C19 | 0.101 (3) | 0.071 (2) | 0.137 (3) | −0.008 (2) | −0.022 (2) | 0.009 (2) |
| C20 | 0.089 (2) | 0.073 (2) | 0.0697 (19) | 0.0018 (18) | 0.0097 (17) | 0.0126 (16) |
| C21 | 0.067 (2) | 0.0626 (19) | 0.074 (2) | −0.0052 (16) | 0.0160 (16) | 0.0004 (17) |
| N1 | 0.0687 (17) | 0.0610 (15) | 0.0689 (15) | −0.0033 (13) | 0.0005 (13) | −0.0027 (12) |
| N2 | 0.101 (2) | 0.0681 (16) | 0.0786 (18) | −0.0248 (15) | 0.0219 (15) | −0.0060 (14) |
| O1 | 0.0948 (17) | 0.0803 (15) | 0.0759 (14) | −0.0244 (13) | 0.0059 (12) | −0.0059 (12) |
| O2 | 0.157 (2) | 0.126 (2) | 0.0737 (16) | −0.0677 (19) | 0.0075 (15) | −0.0092 (14) |
| O3 | 0.1067 (19) | 0.113 (2) | 0.128 (2) | −0.0478 (17) | 0.0056 (16) | −0.0250 (16) |
| O4 | 0.0972 (16) | 0.0654 (13) | 0.0627 (13) | −0.0120 (11) | 0.0038 (11) | 0.0065 (10) |
| O5 | 0.147 (2) | 0.0836 (16) | 0.0905 (16) | −0.0453 (16) | 0.0465 (15) | −0.0088 (13) |
| C1—C6 | 1.365 (4) | C14—C15 | 1.503 (4) |
| C1—C2 | 1.376 (4) | C14—H14A | 0.9700 |
| C1—C17 | 1.509 (4) | C14—H14B | 0.9700 |
| C2—C3 | 1.377 (4) | C15—N1 | 1.475 (4) |
| C2—H2 | 0.9300 | C15—C19 | 1.509 (4) |
| C3—O2 | 1.369 (4) | C15—H15 | 0.9800 |
| C3—C4 | 1.393 (4) | C16—N1 | 1.454 (3) |
| C4—C5 | 1.369 (4) | C16—C17 | 1.508 (4) |
| C4—O3 | 1.375 (4) | C16—H16A | 0.9700 |
| C5—C6 | 1.391 (5) | C16—H16B | 0.9700 |
| C5—H5 | 0.9300 | C17—H17A | 0.9700 |
| C6—H6 | 0.9300 | C17—H17B | 0.9700 |
| C7—C8 | 1.361 (4) | C18—O3 | 1.408 (4) |
| C7—C12 | 1.387 (4) | C18—H18A | 0.9600 |
| C7—H7 | 0.9300 | C18—H18B | 0.9600 |
| C8—C9 | 1.369 (4) | C18—H18C | 0.9600 |
| C8—H8 | 0.9300 | C19—H19A | 0.9600 |
| C9—O1 | 1.363 (3) | C19—H19B | 0.9600 |
| C9—C10 | 1.385 (4) | C19—H19C | 0.9600 |
| C10—C11 | 1.383 (4) | C20—O4 | 1.422 (3) |
| C10—H10 | 0.9300 | C20—H20A | 0.9600 |
| C11—O4 | 1.360 (3) | C20—H20B | 0.9600 |
| C11—C12 | 1.400 (4) | C20—H20C | 0.9600 |
| C12—C21 | 1.493 (4) | C21—O5 | 1.238 (3) |
| C13—O2 | 1.403 (5) | C21—N2 | 1.313 (3) |
| C13—H13A | 0.9600 | N1—H1 | 0.903 (17) |
| C13—H13B | 0.9600 | N2—H2A | 0.8600 |
| C13—H13C | 0.9600 | N2—H2B | 0.8600 |
| C14—O1 | 1.426 (3) | ||
| C6—C1—C2 | 117.3 (3) | N1—C15—C19 | 111.8 (3) |
| C6—C1—C17 | 122.4 (3) | C14—C15—C19 | 109.7 (3) |
| C2—C1—C17 | 120.3 (3) | N1—C15—H15 | 109.5 |
| C1—C2—C3 | 122.4 (3) | C14—C15—H15 | 109.5 |
| C1—C2—H2 | 118.8 | C19—C15—H15 | 109.5 |
| C3—C2—H2 | 118.8 | N1—C16—C17 | 111.4 (2) |
| O2—C3—C2 | 125.1 (3) | N1—C16—H16A | 109.3 |
| O2—C3—C4 | 115.4 (3) | C17—C16—H16A | 109.3 |
| C2—C3—C4 | 119.5 (3) | N1—C16—H16B | 109.3 |
| C5—C4—O3 | 125.9 (3) | C17—C16—H16B | 109.3 |
| C5—C4—C3 | 118.7 (3) | H16A—C16—H16B | 108.0 |
| O3—C4—C3 | 115.4 (3) | C16—C17—C1 | 111.6 (3) |
| C4—C5—C6 | 120.4 (3) | C16—C17—H17A | 109.3 |
| C4—C5—H5 | 119.8 | C1—C17—H17A | 109.3 |
| C6—C5—H5 | 119.8 | C16—C17—H17B | 109.3 |
| C1—C6—C5 | 121.7 (3) | C1—C17—H17B | 109.3 |
| C1—C6—H6 | 119.1 | H17A—C17—H17B | 108.0 |
| C5—C6—H6 | 119.1 | O3—C18—H18A | 109.5 |
| C8—C7—C12 | 123.2 (3) | O3—C18—H18B | 109.5 |
| C8—C7—H7 | 118.4 | H18A—C18—H18B | 109.5 |
| C12—C7—H7 | 118.4 | O3—C18—H18C | 109.5 |
| C7—C8—C9 | 119.5 (3) | H18A—C18—H18C | 109.5 |
| C7—C8—H8 | 120.3 | H18B—C18—H18C | 109.5 |
| C9—C8—H8 | 120.3 | C15—C19—H19A | 109.5 |
| O1—C9—C8 | 116.0 (3) | C15—C19—H19B | 109.5 |
| O1—C9—C10 | 123.9 (3) | H19A—C19—H19B | 109.5 |
| C8—C9—C10 | 120.0 (3) | C15—C19—H19C | 109.5 |
| C11—C10—C9 | 119.8 (3) | H19A—C19—H19C | 109.5 |
| C11—C10—H10 | 120.1 | H19B—C19—H19C | 109.5 |
| C9—C10—H10 | 120.1 | O4—C20—H20A | 109.5 |
| O4—C11—C10 | 121.9 (2) | O4—C20—H20B | 109.5 |
| O4—C11—C12 | 117.1 (2) | H20A—C20—H20B | 109.5 |
| C10—C11—C12 | 121.0 (3) | O4—C20—H20C | 109.5 |
| C7—C12—C11 | 116.5 (3) | H20A—C20—H20C | 109.5 |
| C7—C12—C21 | 117.3 (3) | H20B—C20—H20C | 109.5 |
| C11—C12—C21 | 126.2 (3) | O5—C21—N2 | 121.2 (3) |
| O2—C13—H13A | 109.5 | O5—C21—C12 | 118.4 (3) |
| O2—C13—H13B | 109.5 | N2—C21—C12 | 120.4 (3) |
| H13A—C13—H13B | 109.5 | C16—N1—C15 | 113.7 (2) |
| O2—C13—H13C | 109.5 | C16—N1—H1 | 104.8 (18) |
| H13A—C13—H13C | 109.5 | C15—N1—H1 | 106.9 (19) |
| H13B—C13—H13C | 109.5 | C21—N2—H2A | 120.0 |
| O1—C14—C15 | 107.5 (2) | C21—N2—H2B | 120.0 |
| O1—C14—H14A | 110.2 | H2A—N2—H2B | 120.0 |
| C15—C14—H14A | 110.2 | C9—O1—C14 | 119.7 (2) |
| O1—C14—H14B | 110.2 | C3—O2—C13 | 116.3 (3) |
| C15—C14—H14B | 110.2 | C4—O3—C18 | 117.9 (3) |
| H14A—C14—H14B | 108.5 | C11—O4—C20 | 119.4 (2) |
| N1—C15—C14 | 106.8 (2) |
| H··· | ||||
| N2—H2A···O5i | 0.86 | 2.05 | 2.909 (3) | 178 |
| N2—H2B···O4 | 0.86 | 2.04 | 2.684 (3) | 131 |
| N2—H2B···N1ii | 0.86 | 2.54 | 3.161 (3) | 129 |
| N1—H1···O1 | 0.903 (17) | 2.41 (3) | 2.798 (3) | 106 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 2.05 | 2.909 (3) | 178 |
| N2—H2 | 0.86 | 2.04 | 2.684 (3) | 131 |
| N2—H2 | 0.86 | 2.54 | 3.161 (3) | 129 |
| N1—H1⋯O1 | 0.903 (17) | 2.41 (3) | 2.798 (3) | 106 (2) |
Symmetry codes: (i) ; (ii) .