Literature DB >> 21202652

2,4,6,7-Tetra-methyl-3-phenyl-sulfinyl-1-benzofuran.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(18)H(18)O(2)S, the O atom and the phenyl group of the phenyl-sulfinyl substituent lie on opposite sides of the planar benzofuran fragment. The phenyl ring is nearly perpendicular to the benzofuran system [88.56 (7)°] and is tilted slightly towards it. Molecules form pseudo-helices along the a axis. The crystal structure is stabilized by a C-H⋯π inter-action between a methyl H atom and the phenyl ring of the phenyl-sulfinyl substituent, and by intra- and inter-molecular C-H⋯O inter-actions.

Entities:  

Year:  2008        PMID: 21202652      PMCID: PMC2961357          DOI: 10.1107/S1600536808015031

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the pharmacological properties of benzofuran compounds, see: Howlett et al. (1999 ▶); Ward (1997 ▶). For the structures of other benzofuran derivatives, see: Choi et al. (2007 ▶, 2008 ▶).

Experimental

Crystal data

C18H18O2S M = 298.38 Orthorhombic, a = 12.0402 (6) Å b = 19.673 (1) Å c = 6.4399 (3) Å V = 1525.40 (13) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 173 (2) K 0.40 × 0.40 × 0.30 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: none 9082 measured reflections 2486 independent reflections 2339 reflections with I > 2σ(I) R int = 0.102

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.138 S = 1.08 2486 reflections 194 parameters 1 restraint H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.43 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808015031/fl2196sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808015031/fl2196Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H18O2SF000 = 632
Mr = 298.38Dx = 1.299 Mg m3
Orthorhombic, Pna21Mo Kα radiation λ = 0.71073 Å
Hall symbol: p_2c_-2nCell parameters from 5414 reflections
a = 12.0402 (6) Åθ = 2.7–28.2º
b = 19.673 (1) ŵ = 0.21 mm1
c = 6.4399 (3) ÅT = 173 (2) K
V = 1525.40 (13) Å3Block, colorless
Z = 40.40 × 0.40 × 0.30 mm
Bruker SMART CCD diffractometer2486 independent reflections
Radiation source: fine-focus sealed tube2339 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.102
Detector resolution: 10.0 pixels mm-1θmax = 27.0º
T = 173(2) Kθmin = 2.7º
φ and ω scansh = −14→15
Absorption correction: nonek = −25→24
9082 measured reflectionsl = −8→4
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H-atom parameters constrained
wR(F2) = 0.138  w = 1/[σ2(Fo2) + (0.0864P)2 + 0.5202P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
2486 reflectionsΔρmax = 0.51 e Å3
194 parametersΔρmin = −0.43 e Å3
1 restraintExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.60317 (5)0.74039 (3)0.74685 (15)0.0220 (2)
O10.33116 (17)0.63540 (10)0.8280 (4)0.0229 (5)
O20.71121 (16)0.70681 (11)0.6963 (4)0.0308 (6)
C10.4924 (2)0.68198 (13)0.7252 (5)0.0200 (6)
C20.4634 (2)0.63018 (13)0.5731 (5)0.0199 (6)
C30.5073 (3)0.60387 (14)0.3879 (6)0.0237 (6)
C40.4461 (3)0.55262 (15)0.2916 (5)0.0274 (7)
H40.47440.53360.16680.033*
C50.3448 (3)0.52741 (14)0.3689 (6)0.0277 (7)
C60.3011 (2)0.55259 (14)0.5539 (6)0.0245 (7)
C70.3638 (2)0.60360 (14)0.6471 (5)0.0207 (6)
C80.4118 (2)0.68331 (14)0.8720 (5)0.0205 (6)
C90.5685 (2)0.79514 (14)0.5322 (5)0.0204 (6)
C100.4647 (3)0.82691 (15)0.5279 (6)0.0274 (7)
H100.41010.81710.63000.033*
C110.4437 (3)0.87313 (16)0.3706 (7)0.0339 (8)
H110.37340.89500.36400.041*
C120.5237 (3)0.88799 (16)0.2224 (7)0.0344 (8)
H120.50810.92020.11630.041*
C130.6266 (3)0.85595 (15)0.2287 (7)0.0290 (7)
H130.68110.86580.12640.035*
C140.6494 (2)0.80925 (14)0.3858 (6)0.0235 (7)
H140.71960.78740.39230.028*
C150.6131 (3)0.62939 (17)0.2903 (6)0.0281 (8)
H15A0.64360.59430.19860.042*
H15B0.66720.64000.39940.042*
H15C0.59750.67050.20950.042*
C160.2833 (3)0.47364 (15)0.2454 (9)0.0399 (9)
H16A0.28980.42970.31600.060*
H16B0.31560.47030.10610.060*
H16C0.20470.48620.23440.060*
C170.1937 (3)0.52894 (17)0.6488 (7)0.0337 (8)
H17A0.13140.55210.58120.051*
H17B0.19350.53960.79750.051*
H17C0.18620.47970.62960.051*
C180.3902 (3)0.72565 (17)1.0569 (6)0.0270 (7)
H18A0.45560.75361.08680.041*
H18B0.37430.69631.17610.041*
H18C0.32620.75521.03040.041*
U11U22U33U12U13U23
S0.0194 (3)0.0245 (3)0.0222 (4)−0.0027 (2)−0.0002 (3)−0.0011 (4)
O10.0215 (10)0.0254 (10)0.0219 (12)−0.0032 (8)0.0032 (9)0.0003 (9)
O20.0200 (10)0.0354 (11)0.0369 (16)0.0011 (8)−0.0010 (10)0.0046 (10)
C10.0186 (12)0.0206 (12)0.0208 (17)−0.0016 (9)−0.0004 (12)0.0020 (13)
C20.0207 (14)0.0170 (12)0.0219 (16)0.0013 (10)−0.0010 (13)0.0037 (12)
C30.0248 (14)0.0217 (14)0.0245 (17)0.0062 (10)0.0002 (13)0.0007 (13)
C40.0332 (16)0.0252 (14)0.0239 (19)0.0066 (11)−0.0020 (14)−0.0058 (12)
C50.0322 (17)0.0164 (12)0.034 (2)0.0029 (11)−0.0089 (15)−0.0041 (14)
C60.0234 (14)0.0177 (12)0.0323 (19)0.0013 (10)−0.0036 (14)0.0047 (13)
C70.0201 (12)0.0185 (12)0.0234 (17)0.0022 (10)0.0002 (13)0.0037 (12)
C80.0194 (13)0.0212 (13)0.0210 (16)−0.0017 (10)0.0018 (13)0.0036 (12)
C90.0205 (13)0.0170 (13)0.0237 (16)0.0009 (10)−0.0002 (12)−0.0011 (12)
C100.0232 (15)0.0250 (14)0.0340 (19)−0.0003 (11)0.0061 (14)−0.0015 (13)
C110.0251 (16)0.0282 (16)0.048 (2)0.0039 (11)0.0034 (16)0.0082 (16)
C120.0428 (18)0.0261 (14)0.034 (2)−0.0007 (12)0.0011 (17)0.0064 (16)
C130.0305 (15)0.0271 (14)0.029 (2)−0.0045 (11)0.0062 (17)0.0021 (16)
C140.0204 (14)0.0217 (12)0.0282 (18)0.0002 (10)0.0054 (13)−0.0048 (13)
C150.0266 (15)0.0333 (15)0.025 (2)0.0041 (11)0.0058 (14)−0.0023 (13)
C160.0422 (18)0.0277 (15)0.050 (2)−0.0004 (12)−0.007 (2)−0.012 (2)
C170.0294 (16)0.0307 (16)0.041 (2)−0.0080 (12)−0.0016 (16)0.0059 (16)
C180.0251 (16)0.0323 (15)0.0236 (18)−0.0001 (12)0.0020 (14)−0.0031 (14)
S—O21.495 (2)C10—H100.9500
S—C11.766 (3)C11—C121.387 (5)
S—C91.801 (3)C11—H110.9500
O1—C71.379 (4)C12—C131.391 (5)
O1—C81.383 (3)C12—H120.9500
C1—C81.355 (4)C13—C141.394 (5)
C1—C21.456 (4)C13—H130.9500
C2—C71.393 (4)C14—H140.9500
C2—C31.403 (5)C15—H15A0.9800
C3—C41.394 (4)C15—H15B0.9800
C3—C151.507 (4)C15—H15C0.9800
C4—C51.408 (5)C16—H16A0.9800
C4—H40.9500C16—H16B0.9800
C5—C61.393 (5)C16—H16C0.9800
C5—C161.516 (5)C17—H17A0.9800
C6—C71.392 (4)C17—H17B0.9800
C6—C171.504 (5)C17—H17C0.9800
C8—C181.476 (5)C18—H18A0.9800
C9—C141.383 (5)C18—H18B0.9800
C9—C101.398 (4)C18—H18C0.9800
C10—C111.385 (5)
O2—S—C1110.63 (13)C10—C11—H11119.5
O2—S—C9107.37 (15)C12—C11—H11119.5
C1—S—C998.84 (14)C11—C12—C13120.2 (3)
C7—O1—C8106.4 (2)C11—C12—H12119.9
C8—C1—C2108.1 (2)C13—C12—H12119.9
C8—C1—S118.2 (2)C12—C13—C14119.7 (3)
C2—C1—S133.6 (2)C12—C13—H13120.2
C7—C2—C3118.5 (3)C14—C13—H13120.2
C7—C2—C1103.8 (3)C9—C14—C13119.2 (3)
C3—C2—C1137.7 (3)C9—C14—H14120.4
C4—C3—C2116.5 (3)C13—C14—H14120.4
C4—C3—C15120.1 (3)C3—C15—H15A109.5
C2—C3—C15123.4 (3)C3—C15—H15B109.5
C3—C4—C5123.7 (3)H15A—C15—H15B109.5
C3—C4—H4118.1C3—C15—H15C109.5
C5—C4—H4118.1H15A—C15—H15C109.5
C6—C5—C4120.3 (3)H15B—C15—H15C109.5
C6—C5—C16120.8 (3)C5—C16—H16A109.5
C4—C5—C16118.9 (3)C5—C16—H16B109.5
C7—C6—C5114.9 (3)H16A—C16—H16B109.5
C7—C6—C17120.9 (3)C5—C16—H16C109.5
C5—C6—C17124.2 (3)H16A—C16—H16C109.5
O1—C7—C6122.5 (3)H16B—C16—H16C109.5
O1—C7—C2111.3 (3)C6—C17—H17A109.5
C6—C7—C2126.2 (3)C6—C17—H17B109.5
C1—C8—O1110.3 (3)H17A—C17—H17B109.5
C1—C8—C18134.4 (3)C6—C17—H17C109.5
O1—C8—C18115.2 (3)H17A—C17—H17C109.5
C14—C9—C10121.7 (3)H17B—C17—H17C109.5
C14—C9—S118.7 (2)C8—C18—H18A109.5
C10—C9—S119.3 (3)C8—C18—H18B109.5
C11—C10—C9118.1 (3)H18A—C18—H18B109.5
C11—C10—H10120.9C8—C18—H18C109.5
C9—C10—H10120.9H18A—C18—H18C109.5
C10—C11—C12121.0 (3)H18B—C18—H18C109.5
O2—S—C1—C8138.4 (2)C5—C6—C7—C2−0.3 (4)
C9—S—C1—C8−109.2 (3)C17—C6—C7—C2−179.2 (3)
O2—S—C1—C2−43.7 (3)C3—C2—C7—O1−179.1 (2)
C9—S—C1—C268.7 (3)C1—C2—C7—O10.4 (3)
C8—C1—C2—C7−0.5 (3)C3—C2—C7—C6−0.4 (5)
S—C1—C2—C7−178.5 (2)C1—C2—C7—C6179.2 (3)
C8—C1—C2—C3179.0 (3)C2—C1—C8—O10.3 (3)
S—C1—C2—C30.9 (6)S—C1—C8—O1178.72 (19)
C7—C2—C3—C40.2 (4)C2—C1—C8—C18−176.4 (3)
C1—C2—C3—C4−179.2 (3)S—C1—C8—C182.0 (5)
C7—C2—C3—C15178.8 (3)C7—O1—C8—C10.0 (3)
C1—C2—C3—C15−0.6 (6)C7—O1—C8—C18177.4 (3)
C2—C3—C4—C50.6 (5)O2—S—C9—C14−13.1 (3)
C15—C3—C4—C5−178.0 (3)C1—S—C9—C14−128.1 (3)
C3—C4—C5—C6−1.4 (5)O2—S—C9—C10172.6 (2)
C3—C4—C5—C16177.4 (3)C1—S—C9—C1057.6 (3)
C4—C5—C6—C71.2 (4)C14—C9—C10—C110.5 (5)
C16—C5—C6—C7−177.6 (3)S—C9—C10—C11174.7 (3)
C4—C5—C6—C17−180.0 (3)C9—C10—C11—C12−0.6 (5)
C16—C5—C6—C171.3 (5)C10—C11—C12—C130.6 (6)
C8—O1—C7—C6−179.1 (3)C11—C12—C13—C14−0.6 (5)
C8—O1—C7—C2−0.3 (3)C10—C9—C14—C13−0.5 (5)
C5—C6—C7—O1178.3 (3)S—C9—C14—C13−174.7 (2)
C17—C6—C7—O1−0.6 (5)C12—C13—C14—C90.6 (5)
D—H···AD—HH···AD···AD—H···A
C17—H17A···Cgi0.982.683.565 (5)151
C10—H10···O2i0.952.483.306 (4)146
C15—H15B···O20.982.383.248 (4)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C17—H17ACgi0.982.683.565 (5)151
C10—H10⋯O2i0.952.483.306 (4)146
C15—H15B⋯O20.982.383.248 (4)147

Symmetry code: (i) . Cg is the centroid of the C9–C14 phenyl ring.

  3 in total

1.  Inhibition of fibril formation in beta-amyloid peptide by a novel series of benzofurans.

Authors:  D R Howlett; A E Perry; F Godfrey; J E Swatton; K H Jennings; C Spitzfaden; H Wadsworth; S J Wood; R E Markwell
Journal:  Biochem J       Date:  1999-05-15       Impact factor: 3.857

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  5-Iodo-2,7-dimethyl-3-phenyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-23
  3 in total
  4 in total

1.  2,5,7-Trimethyl-3-phenyl-sulfinyl-1-benzo-furan.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-05

2.  2,4,6-Trimethyl-3-phenyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-12

3.  2-Methyl-3-phenyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-12

4.  2,4,5,6-Tetra-methyl-3-phenyl-sulfinyl-1-benzofuran.

Authors:  Pil Ja Seo; Hong Dae Choi; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-25
  4 in total

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