| Literature DB >> 21202627 |
Hong Dae Choi, Pil Ja Seo, Byung Ki Kim, Byeng Wha Son, Uk Lee.
Abstract
The title compound, C(16)H(13)IO(2)S, was prepared by the oxidation of 5-iodo-7-methyl-3-methyl-sulfanyl-2-phenyl-1-benzofuran with 3-chloro-peroxy-benzoic acid. The phenyl ring makes a dihedral angle of 27.17 (9)° with the plane of the benzofuran fragment, with the O atom and the methyl group of the methyl-sulfinyl substituent lying on opposite sides of this plane. The crystal structure exhibits inter-molecular C-H⋯I inter-actions, and an I⋯O halogen bond of 3.107 (2) Å with a nearly linear C-I⋯O angle of 173.73 (6)°.Entities:
Year: 2008 PMID: 21202627 PMCID: PMC2961360 DOI: 10.1107/S1600536808014694
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H13IO2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9956 reflections |
| θ = 2.1–28.4º | |
| µ = 2.32 mm−1 | |
| β = 112.847 (7)º | Block, colorless |
| 0.40 × 0.20 × 0.20 mm | |
| Bruker SMART CCD diffractometer | 2877 independent reflections |
| Radiation source: fine-focus sealed tube | 2706 reflections with |
| Monochromator: graphite | |
| Detector resolution: 10.0 pixels mm-1 | θmax = 26.0º |
| θmin = 2.4º | |
| φ and ω scans | |
| Absorption correction: multi-scan(SADABS; Sheldrick, 2000) | |
| 11429 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.001 | |
| 2877 reflections | Δρmax = 0.39 e Å−3 |
| 183 parameters | Δρmin = −0.66 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| I | −0.043288 (13) | 0.558358 (8) | 0.210981 (16) | 0.02333 (7) | |
| S | 0.36162 (5) | 0.29269 (3) | 0.14788 (6) | 0.02051 (11) | |
| O1 | 0.50724 (14) | 0.38231 (8) | 0.59241 (16) | 0.0184 (3) | |
| O2 | 0.30733 (17) | 0.35243 (9) | 0.01551 (18) | 0.0280 (3) | |
| C1 | 0.3955 (2) | 0.34115 (11) | 0.3340 (2) | 0.0186 (4) | |
| C2 | 0.3154 (2) | 0.40433 (12) | 0.3616 (2) | 0.0185 (4) | |
| C3 | 0.1901 (2) | 0.44237 (11) | 0.2685 (3) | 0.0199 (4) | |
| H3 | 0.1385 | 0.4291 | 0.1581 | 0.024* | |
| C4 | 0.1451 (2) | 0.50027 (12) | 0.3454 (2) | 0.0203 (4) | |
| C5 | 0.2211 (2) | 0.52118 (12) | 0.5084 (2) | 0.0211 (4) | |
| H5 | 0.1866 | 0.5614 | 0.5556 | 0.025* | |
| C6 | 0.3460 (2) | 0.48423 (11) | 0.6021 (2) | 0.0195 (4) | |
| C7 | 0.3883 (2) | 0.42659 (12) | 0.5218 (2) | 0.0182 (4) | |
| C8 | 0.5095 (2) | 0.32999 (11) | 0.4756 (2) | 0.0180 (4) | |
| C9 | 0.6257 (2) | 0.27448 (12) | 0.5307 (2) | 0.0184 (4) | |
| C10 | 0.7494 (2) | 0.29442 (13) | 0.6599 (3) | 0.0267 (5) | |
| H10 | 0.7591 | 0.3445 | 0.7082 | 0.032* | |
| C11 | 0.8579 (2) | 0.24128 (14) | 0.7177 (3) | 0.0357 (6) | |
| H11 | 0.9417 | 0.2550 | 0.8061 | 0.043* | |
| C12 | 0.8452 (2) | 0.16800 (14) | 0.6474 (3) | 0.0333 (5) | |
| H12 | 0.9199 | 0.1317 | 0.6875 | 0.040* | |
| C13 | 0.7229 (2) | 0.14820 (13) | 0.5185 (3) | 0.0284 (5) | |
| H13 | 0.7144 | 0.0984 | 0.4693 | 0.034* | |
| C14 | 0.6129 (2) | 0.20047 (12) | 0.4608 (3) | 0.0242 (4) | |
| H14 | 0.5287 | 0.1861 | 0.3738 | 0.029* | |
| C15 | 0.4267 (2) | 0.50275 (13) | 0.7788 (3) | 0.0265 (5) | |
| H15A | 0.4092 | 0.4624 | 0.8460 | 0.040* | |
| H15B | 0.3967 | 0.5534 | 0.8043 | 0.040* | |
| H15C | 0.5268 | 0.5046 | 0.8010 | 0.040* | |
| C16 | 0.2127 (2) | 0.23678 (14) | 0.1402 (3) | 0.0310 (5) | |
| H16A | 0.1375 | 0.2721 | 0.1369 | 0.046* | |
| H16B | 0.2391 | 0.2037 | 0.2369 | 0.046* | |
| H16C | 0.1803 | 0.2041 | 0.0428 | 0.046* |
| I | 0.01881 (9) | 0.02267 (10) | 0.02713 (10) | 0.00497 (5) | 0.00739 (7) | 0.00177 (5) |
| S | 0.0221 (3) | 0.0235 (3) | 0.0161 (2) | 0.0048 (2) | 0.00748 (19) | −0.00083 (18) |
| O1 | 0.0190 (7) | 0.0184 (7) | 0.0170 (6) | 0.0028 (5) | 0.0060 (6) | −0.0001 (5) |
| O2 | 0.0330 (9) | 0.0325 (8) | 0.0175 (7) | 0.0065 (7) | 0.0088 (6) | 0.0050 (6) |
| C1 | 0.0197 (9) | 0.0193 (10) | 0.0179 (9) | 0.0009 (8) | 0.0084 (8) | −0.0004 (7) |
| C2 | 0.0194 (9) | 0.0184 (9) | 0.0193 (9) | 0.0006 (8) | 0.0094 (8) | 0.0015 (7) |
| C3 | 0.0199 (10) | 0.0203 (10) | 0.0187 (10) | 0.0017 (8) | 0.0067 (8) | 0.0017 (7) |
| C4 | 0.0170 (9) | 0.0227 (10) | 0.0215 (10) | 0.0023 (8) | 0.0077 (8) | 0.0038 (8) |
| C5 | 0.0248 (10) | 0.0186 (10) | 0.0226 (10) | 0.0023 (8) | 0.0123 (9) | −0.0007 (8) |
| C6 | 0.0233 (10) | 0.0180 (9) | 0.0193 (10) | −0.0003 (8) | 0.0105 (8) | 0.0006 (7) |
| C7 | 0.0185 (10) | 0.0169 (9) | 0.0194 (10) | −0.0004 (8) | 0.0075 (8) | 0.0025 (7) |
| C8 | 0.0205 (10) | 0.0174 (9) | 0.0181 (9) | −0.0016 (8) | 0.0096 (8) | −0.0008 (7) |
| C9 | 0.0177 (9) | 0.0206 (10) | 0.0186 (9) | 0.0003 (8) | 0.0090 (8) | 0.0040 (7) |
| C10 | 0.0219 (11) | 0.0215 (10) | 0.0324 (12) | −0.0011 (9) | 0.0057 (9) | −0.0006 (9) |
| C11 | 0.0186 (11) | 0.0308 (12) | 0.0452 (14) | 0.0026 (9) | −0.0013 (10) | 0.0021 (10) |
| C12 | 0.0233 (11) | 0.0274 (12) | 0.0478 (14) | 0.0080 (9) | 0.0121 (11) | 0.0091 (10) |
| C13 | 0.0324 (12) | 0.0209 (10) | 0.0338 (12) | 0.0036 (9) | 0.0150 (10) | 0.0013 (9) |
| C14 | 0.0251 (11) | 0.0232 (10) | 0.0234 (10) | 0.0010 (9) | 0.0086 (9) | −0.0003 (8) |
| C15 | 0.0320 (12) | 0.0269 (11) | 0.0190 (10) | 0.0020 (9) | 0.0080 (9) | −0.0031 (8) |
| C16 | 0.0315 (12) | 0.0311 (12) | 0.0278 (11) | −0.0070 (10) | 0.0087 (10) | −0.0055 (9) |
| I—C4 | 2.107 (2) | C8—C9 | 1.465 (3) |
| I—O2i | 3.107 (2) | C9—C10 | 1.396 (3) |
| S—O2 | 1.501 (2) | C9—C14 | 1.400 (3) |
| S—C1 | 1.770 (2) | C10—C11 | 1.385 (3) |
| S—C16 | 1.799 (2) | C10—H10 | 0.9500 |
| O1—C7 | 1.377 (2) | C11—C12 | 1.390 (4) |
| O1—C8 | 1.385 (2) | C11—H11 | 0.9500 |
| C1—C8 | 1.370 (3) | C12—C13 | 1.386 (3) |
| C1—C2 | 1.446 (3) | C12—H12 | 0.9500 |
| C2—C7 | 1.389 (3) | C13—C14 | 1.385 (3) |
| C2—C3 | 1.404 (3) | C13—H13 | 0.9500 |
| C3—C4 | 1.389 (3) | C14—H14 | 0.9500 |
| C3—H3 | 0.9500 | C15—H15A | 0.9800 |
| C4—C5 | 1.409 (3) | C15—H15B | 0.9800 |
| C5—C6 | 1.394 (3) | C15—H15C | 0.9800 |
| C5—H5 | 0.9500 | C16—H16A | 0.9800 |
| C6—C7 | 1.391 (3) | C16—H16B | 0.9800 |
| C6—C15 | 1.507 (3) | C16—H16C | 0.9800 |
| C4—I—O2i | 173.73 (6) | C10—C9—C8 | 119.45 (19) |
| O2—S—C1 | 107.27 (10) | C14—C9—C8 | 121.16 (18) |
| O2—S—C16 | 106.30 (11) | C11—C10—C9 | 120.1 (2) |
| C1—S—C16 | 98.10 (10) | C11—C10—H10 | 120.0 |
| C7—O1—C8 | 106.69 (15) | C9—C10—H10 | 120.0 |
| C8—C1—C2 | 107.15 (17) | C10—C11—C12 | 120.5 (2) |
| C8—C1—S | 126.05 (16) | C10—C11—H11 | 119.8 |
| C2—C1—S | 126.59 (15) | C12—C11—H11 | 119.8 |
| C7—C2—C3 | 119.48 (19) | C13—C12—C11 | 119.6 (2) |
| C7—C2—C1 | 105.27 (17) | C13—C12—H12 | 120.2 |
| C3—C2—C1 | 135.23 (19) | C11—C12—H12 | 120.2 |
| C4—C3—C2 | 116.85 (19) | C14—C13—C12 | 120.5 (2) |
| C4—C3—H3 | 121.6 | C14—C13—H13 | 119.7 |
| C2—C3—H3 | 121.6 | C12—C13—H13 | 119.7 |
| C3—C4—C5 | 122.24 (19) | C13—C14—C9 | 120.0 (2) |
| C3—C4—I | 118.20 (15) | C13—C14—H14 | 120.0 |
| C5—C4—I | 119.56 (15) | C9—C14—H14 | 120.0 |
| C6—C5—C4 | 121.56 (19) | C6—C15—H15A | 109.5 |
| C6—C5—H5 | 119.2 | C6—C15—H15B | 109.5 |
| C4—C5—H5 | 119.2 | H15A—C15—H15B | 109.5 |
| C5—C6—C7 | 114.84 (18) | C6—C15—H15C | 109.5 |
| C5—C6—C15 | 122.91 (19) | H15A—C15—H15C | 109.5 |
| C7—C6—C15 | 122.21 (19) | H15B—C15—H15C | 109.5 |
| O1—C7—C2 | 110.71 (17) | S—C16—H16A | 109.5 |
| O1—C7—C6 | 124.27 (18) | S—C16—H16B | 109.5 |
| C2—C7—C6 | 125.00 (19) | H16A—C16—H16B | 109.5 |
| C1—C8—O1 | 110.17 (17) | S—C16—H16C | 109.5 |
| C1—C8—C9 | 134.83 (18) | H16A—C16—H16C | 109.5 |
| O1—C8—C9 | 114.93 (16) | H16B—C16—H16C | 109.5 |
| C10—C9—C14 | 119.33 (19) | ||
| O2—S—C1—C8 | −138.12 (18) | C5—C6—C7—O1 | −179.08 (18) |
| C16—S—C1—C8 | 111.9 (2) | C15—C6—C7—O1 | −1.3 (3) |
| O2—S—C1—C2 | 36.1 (2) | C5—C6—C7—C2 | −0.8 (3) |
| C16—S—C1—C2 | −73.9 (2) | C15—C6—C7—C2 | 176.9 (2) |
| C8—C1—C2—C7 | −0.4 (2) | C2—C1—C8—O1 | 0.0 (2) |
| S—C1—C2—C7 | −175.49 (15) | S—C1—C8—O1 | 175.08 (14) |
| C8—C1—C2—C3 | −179.1 (2) | C2—C1—C8—C9 | 176.7 (2) |
| S—C1—C2—C3 | 5.9 (3) | S—C1—C8—C9 | −8.2 (3) |
| C7—C2—C3—C4 | −1.1 (3) | C7—O1—C8—C1 | 0.5 (2) |
| C1—C2—C3—C4 | 177.4 (2) | C7—O1—C8—C9 | −176.98 (16) |
| C2—C3—C4—C5 | 0.8 (3) | C1—C8—C9—C10 | 157.6 (2) |
| C2—C3—C4—I | −179.53 (14) | O1—C8—C9—C10 | −25.8 (3) |
| C3—C4—C5—C6 | −0.5 (3) | C1—C8—C9—C14 | −25.2 (3) |
| I—C4—C5—C6 | 179.82 (15) | O1—C8—C9—C14 | 151.38 (18) |
| C4—C5—C6—C7 | 0.5 (3) | C14—C9—C10—C11 | 0.0 (3) |
| C4—C5—C6—C15 | −177.3 (2) | C8—C9—C10—C11 | 177.3 (2) |
| C8—O1—C7—C2 | −0.7 (2) | C9—C10—C11—C12 | 0.4 (4) |
| C8—O1—C7—C6 | 177.71 (19) | C10—C11—C12—C13 | 0.0 (4) |
| C3—C2—C7—O1 | 179.63 (17) | C11—C12—C13—C14 | −0.8 (4) |
| C1—C2—C7—O1 | 0.7 (2) | C12—C13—C14—C9 | 1.2 (3) |
| C3—C2—C7—C6 | 1.2 (3) | C10—C9—C14—C13 | −0.8 (3) |
| C1—C2—C7—C6 | −177.73 (19) | C8—C9—C14—C13 | −178.01 (19) |
| H··· | ||||
| C3—H3···Ii | 0.95 | 3.06 | 3.954 (3) | 157 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C3—H3⋯Ii | 0.95 | 3.06 | 3.954 (3) | 157 |
Symmetry code: (i) .