Literature DB >> 21202627

5-Iodo-7-methyl-3-methyl-sulfinyl-2-phenyl-1-benzofuran.

Hong Dae Choi, Pil Ja Seo, Byung Ki Kim, Byeng Wha Son, Uk Lee.   

Abstract

The title compound, C(16)H(13)IO(2)S, was prepared by the oxidation of 5-iodo-7-methyl-3-methyl-sulfanyl-2-phenyl-1-benzofuran with 3-chloro-peroxy-benzoic acid. The phenyl ring makes a dihedral angle of 27.17 (9)° with the plane of the benzofuran fragment, with the O atom and the methyl group of the methyl-sulfinyl substituent lying on opposite sides of this plane. The crystal structure exhibits inter-molecular C-H⋯I inter-actions, and an I⋯O halogen bond of 3.107 (2) Å with a nearly linear C-I⋯O angle of 173.73 (6)°.

Entities:  

Year:  2008        PMID: 21202627      PMCID: PMC2961360          DOI: 10.1107/S1600536808014694

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar 5-halo-3-methyl­sulfinyl-2-phenyl-1-benzofuran compounds, see: Choi et al. (2007a ▶,b ▶). For a review of halogen bonding, see: Politzer et al. (2007 ▶).

Experimental

Crystal data

C16H13IO2S M = 396.22 Monoclinic, a = 10.385 (5) Å b = 17.174 (8) Å c = 8.943 (4) Å β = 112.847 (7)° V = 1469.9 (12) Å3 Z = 4 Mo Kα radiation μ = 2.32 mm−1 T = 173 (2) K 0.40 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.572, T max = 0.623 11429 measured reflections 2877 independent reflections 2706 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.020 wR(F 2) = 0.053 S = 1.06 2877 reflections 183 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.66 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808014694/zl2118sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808014694/zl2118Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13IO2SF000 = 776
Mr = 396.22Dx = 1.790 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9956 reflections
a = 10.385 (5) Åθ = 2.1–28.4º
b = 17.174 (8) ŵ = 2.32 mm1
c = 8.943 (4) ÅT = 173 (2) K
β = 112.847 (7)ºBlock, colorless
V = 1469.9 (12) Å30.40 × 0.20 × 0.20 mm
Z = 4
Bruker SMART CCD diffractometer2877 independent reflections
Radiation source: fine-focus sealed tube2706 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.032
Detector resolution: 10.0 pixels mm-1θmax = 26.0º
T = 173(2) Kθmin = 2.4º
φ and ω scansh = −12→12
Absorption correction: multi-scan(SADABS; Sheldrick, 2000)k = −21→21
Tmin = 0.572, Tmax = 0.623l = −11→11
11429 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.020H-atom parameters constrained
wR(F2) = 0.053  w = 1/[σ2(Fo2) + (0.0278P)2 + 0.8832P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
2877 reflectionsΔρmax = 0.39 e Å3
183 parametersΔρmin = −0.66 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I−0.043288 (13)0.558358 (8)0.210981 (16)0.02333 (7)
S0.36162 (5)0.29269 (3)0.14788 (6)0.02051 (11)
O10.50724 (14)0.38231 (8)0.59241 (16)0.0184 (3)
O20.30733 (17)0.35243 (9)0.01551 (18)0.0280 (3)
C10.3955 (2)0.34115 (11)0.3340 (2)0.0186 (4)
C20.3154 (2)0.40433 (12)0.3616 (2)0.0185 (4)
C30.1901 (2)0.44237 (11)0.2685 (3)0.0199 (4)
H30.13850.42910.15810.024*
C40.1451 (2)0.50027 (12)0.3454 (2)0.0203 (4)
C50.2211 (2)0.52118 (12)0.5084 (2)0.0211 (4)
H50.18660.56140.55560.025*
C60.3460 (2)0.48423 (11)0.6021 (2)0.0195 (4)
C70.3883 (2)0.42659 (12)0.5218 (2)0.0182 (4)
C80.5095 (2)0.32999 (11)0.4756 (2)0.0180 (4)
C90.6257 (2)0.27448 (12)0.5307 (2)0.0184 (4)
C100.7494 (2)0.29442 (13)0.6599 (3)0.0267 (5)
H100.75910.34450.70820.032*
C110.8579 (2)0.24128 (14)0.7177 (3)0.0357 (6)
H110.94170.25500.80610.043*
C120.8452 (2)0.16800 (14)0.6474 (3)0.0333 (5)
H120.91990.13170.68750.040*
C130.7229 (2)0.14820 (13)0.5185 (3)0.0284 (5)
H130.71440.09840.46930.034*
C140.6129 (2)0.20047 (12)0.4608 (3)0.0242 (4)
H140.52870.18610.37380.029*
C150.4267 (2)0.50275 (13)0.7788 (3)0.0265 (5)
H15A0.40920.46240.84600.040*
H15B0.39670.55340.80430.040*
H15C0.52680.50460.80100.040*
C160.2127 (2)0.23678 (14)0.1402 (3)0.0310 (5)
H16A0.13750.27210.13690.046*
H16B0.23910.20370.23690.046*
H16C0.18030.20410.04280.046*
U11U22U33U12U13U23
I0.01881 (9)0.02267 (10)0.02713 (10)0.00497 (5)0.00739 (7)0.00177 (5)
S0.0221 (3)0.0235 (3)0.0161 (2)0.0048 (2)0.00748 (19)−0.00083 (18)
O10.0190 (7)0.0184 (7)0.0170 (6)0.0028 (5)0.0060 (6)−0.0001 (5)
O20.0330 (9)0.0325 (8)0.0175 (7)0.0065 (7)0.0088 (6)0.0050 (6)
C10.0197 (9)0.0193 (10)0.0179 (9)0.0009 (8)0.0084 (8)−0.0004 (7)
C20.0194 (9)0.0184 (9)0.0193 (9)0.0006 (8)0.0094 (8)0.0015 (7)
C30.0199 (10)0.0203 (10)0.0187 (10)0.0017 (8)0.0067 (8)0.0017 (7)
C40.0170 (9)0.0227 (10)0.0215 (10)0.0023 (8)0.0077 (8)0.0038 (8)
C50.0248 (10)0.0186 (10)0.0226 (10)0.0023 (8)0.0123 (9)−0.0007 (8)
C60.0233 (10)0.0180 (9)0.0193 (10)−0.0003 (8)0.0105 (8)0.0006 (7)
C70.0185 (10)0.0169 (9)0.0194 (10)−0.0004 (8)0.0075 (8)0.0025 (7)
C80.0205 (10)0.0174 (9)0.0181 (9)−0.0016 (8)0.0096 (8)−0.0008 (7)
C90.0177 (9)0.0206 (10)0.0186 (9)0.0003 (8)0.0090 (8)0.0040 (7)
C100.0219 (11)0.0215 (10)0.0324 (12)−0.0011 (9)0.0057 (9)−0.0006 (9)
C110.0186 (11)0.0308 (12)0.0452 (14)0.0026 (9)−0.0013 (10)0.0021 (10)
C120.0233 (11)0.0274 (12)0.0478 (14)0.0080 (9)0.0121 (11)0.0091 (10)
C130.0324 (12)0.0209 (10)0.0338 (12)0.0036 (9)0.0150 (10)0.0013 (9)
C140.0251 (11)0.0232 (10)0.0234 (10)0.0010 (9)0.0086 (9)−0.0003 (8)
C150.0320 (12)0.0269 (11)0.0190 (10)0.0020 (9)0.0080 (9)−0.0031 (8)
C160.0315 (12)0.0311 (12)0.0278 (11)−0.0070 (10)0.0087 (10)−0.0055 (9)
I—C42.107 (2)C8—C91.465 (3)
I—O2i3.107 (2)C9—C101.396 (3)
S—O21.501 (2)C9—C141.400 (3)
S—C11.770 (2)C10—C111.385 (3)
S—C161.799 (2)C10—H100.9500
O1—C71.377 (2)C11—C121.390 (4)
O1—C81.385 (2)C11—H110.9500
C1—C81.370 (3)C12—C131.386 (3)
C1—C21.446 (3)C12—H120.9500
C2—C71.389 (3)C13—C141.385 (3)
C2—C31.404 (3)C13—H130.9500
C3—C41.389 (3)C14—H140.9500
C3—H30.9500C15—H15A0.9800
C4—C51.409 (3)C15—H15B0.9800
C5—C61.394 (3)C15—H15C0.9800
C5—H50.9500C16—H16A0.9800
C6—C71.391 (3)C16—H16B0.9800
C6—C151.507 (3)C16—H16C0.9800
C4—I—O2i173.73 (6)C10—C9—C8119.45 (19)
O2—S—C1107.27 (10)C14—C9—C8121.16 (18)
O2—S—C16106.30 (11)C11—C10—C9120.1 (2)
C1—S—C1698.10 (10)C11—C10—H10120.0
C7—O1—C8106.69 (15)C9—C10—H10120.0
C8—C1—C2107.15 (17)C10—C11—C12120.5 (2)
C8—C1—S126.05 (16)C10—C11—H11119.8
C2—C1—S126.59 (15)C12—C11—H11119.8
C7—C2—C3119.48 (19)C13—C12—C11119.6 (2)
C7—C2—C1105.27 (17)C13—C12—H12120.2
C3—C2—C1135.23 (19)C11—C12—H12120.2
C4—C3—C2116.85 (19)C14—C13—C12120.5 (2)
C4—C3—H3121.6C14—C13—H13119.7
C2—C3—H3121.6C12—C13—H13119.7
C3—C4—C5122.24 (19)C13—C14—C9120.0 (2)
C3—C4—I118.20 (15)C13—C14—H14120.0
C5—C4—I119.56 (15)C9—C14—H14120.0
C6—C5—C4121.56 (19)C6—C15—H15A109.5
C6—C5—H5119.2C6—C15—H15B109.5
C4—C5—H5119.2H15A—C15—H15B109.5
C5—C6—C7114.84 (18)C6—C15—H15C109.5
C5—C6—C15122.91 (19)H15A—C15—H15C109.5
C7—C6—C15122.21 (19)H15B—C15—H15C109.5
O1—C7—C2110.71 (17)S—C16—H16A109.5
O1—C7—C6124.27 (18)S—C16—H16B109.5
C2—C7—C6125.00 (19)H16A—C16—H16B109.5
C1—C8—O1110.17 (17)S—C16—H16C109.5
C1—C8—C9134.83 (18)H16A—C16—H16C109.5
O1—C8—C9114.93 (16)H16B—C16—H16C109.5
C10—C9—C14119.33 (19)
O2—S—C1—C8−138.12 (18)C5—C6—C7—O1−179.08 (18)
C16—S—C1—C8111.9 (2)C15—C6—C7—O1−1.3 (3)
O2—S—C1—C236.1 (2)C5—C6—C7—C2−0.8 (3)
C16—S—C1—C2−73.9 (2)C15—C6—C7—C2176.9 (2)
C8—C1—C2—C7−0.4 (2)C2—C1—C8—O10.0 (2)
S—C1—C2—C7−175.49 (15)S—C1—C8—O1175.08 (14)
C8—C1—C2—C3−179.1 (2)C2—C1—C8—C9176.7 (2)
S—C1—C2—C35.9 (3)S—C1—C8—C9−8.2 (3)
C7—C2—C3—C4−1.1 (3)C7—O1—C8—C10.5 (2)
C1—C2—C3—C4177.4 (2)C7—O1—C8—C9−176.98 (16)
C2—C3—C4—C50.8 (3)C1—C8—C9—C10157.6 (2)
C2—C3—C4—I−179.53 (14)O1—C8—C9—C10−25.8 (3)
C3—C4—C5—C6−0.5 (3)C1—C8—C9—C14−25.2 (3)
I—C4—C5—C6179.82 (15)O1—C8—C9—C14151.38 (18)
C4—C5—C6—C70.5 (3)C14—C9—C10—C110.0 (3)
C4—C5—C6—C15−177.3 (2)C8—C9—C10—C11177.3 (2)
C8—O1—C7—C2−0.7 (2)C9—C10—C11—C120.4 (4)
C8—O1—C7—C6177.71 (19)C10—C11—C12—C130.0 (4)
C3—C2—C7—O1179.63 (17)C11—C12—C13—C14−0.8 (4)
C1—C2—C7—O10.7 (2)C12—C13—C14—C91.2 (3)
C3—C2—C7—C61.2 (3)C10—C9—C14—C13−0.8 (3)
C1—C2—C7—C6−177.73 (19)C8—C9—C14—C13−178.01 (19)
D—H···AD—HH···AD···AD—H···A
C3—H3···Ii0.953.063.954 (3)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯Ii0.953.063.954 (3)157

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An overview of halogen bonding.

Authors:  Peter Politzer; Pat Lane; Monica C Concha; Yuguang Ma; Jane S Murray
Journal:  J Mol Model       Date:  2006-09-30       Impact factor: 1.810

  2 in total
  2 in total

1.  2-(3-Fluoro-phen-yl)-5-iodo-7-methyl-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-05

2.  5-Iodo-7-methyl-2-(4-methyl-phen-yl)-3-methyl-sulfinyl-1-benzo-furan.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-22
  2 in total

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