Literature DB >> 21202608

2-(3,4,5-Trimethoxy-phen-yl)-1H-benzimidazole.

Aliakbar Dehno Khalaji, Fangfang Jian, Hailian Xiao, William T A Harrison.   

Abstract

In the title compound, C(16)H(16)N(2)O(3), the dihedral angle between the mean planes of the aromatic ring systems is 30.90 (15)°. In the crystal structure, the mol-ecules form [010] chains by way of N-H⋯N hydrogen bonds.

Entities:  

Year:  2008        PMID: 21202608      PMCID: PMC2961418          DOI: 10.1107/S1600536808014189

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Rashid et al. (2007 ▶). For background, see: Gupta et al. (2004 ▶). For reference structural data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C16H16N2O3 M = 284.31 Orthorhombic, a = 8.2270 (16) Å b = 9.5750 (19) Å c = 37.375 (7) Å V = 2944.2 (10) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 295 (2) K 0.25 × 0.20 × 0.18 mm

Data collection

Enraf-Nonius CAD-4 diffractometer Absorption correction: none 5421 measured reflections 2733 independent reflections 960 reflections with I > 2σ(I) R int = 0.085 3 standard reflections every 100 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.143 S = 0.94 2733 reflections 190 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: NRCVAX (Gabe et al., 1989 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808014189/bt2706sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808014189/bt2706Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N2O3F000 = 1200
Mr = 284.31Dx = 1.283 Mg m3
Orthorhombic, PbcaMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 25 reflections
a = 8.2270 (16) Åθ = 4–14º
b = 9.5750 (19) ŵ = 0.09 mm1
c = 37.375 (7) ÅT = 295 (2) K
V = 2944.2 (10) Å3Block, colourless
Z = 80.25 × 0.20 × 0.18 mm
Enraf-Nonius CAD-4 diffractometerRint = 0.085
Radiation source: fine-focus sealed tubeθmax = 25.5º
Monochromator: graphiteθmin = 1.1º
T = 295(2) Kh = −9→0
ω scansk = −11→0
Absorption correction: nonel = −44→44
5421 measured reflections3 standard reflections
2733 independent reflections every 100 reflections
960 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H-atom parameters constrained
wR(F2) = 0.143  w = 1/[σ2(Fo2) + (0.0483P)2] where P = (Fo2 + 2Fc2)/3
S = 0.94(Δ/σ)max < 0.001
2733 reflectionsΔρmax = 0.21 e Å3
190 parametersΔρmin = −0.20 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.2012 (3)0.2286 (3)0.03723 (7)0.0646 (9)
O20.9428 (3)0.3940 (3)0.03507 (7)0.0591 (9)
O31.2638 (3)0.0641 (3)0.09566 (8)0.0609 (8)
N10.7160 (3)0.0683 (3)0.16552 (8)0.0387 (8)
H1A0.7705−0.00740.16230.046*
N20.6374 (3)0.2921 (3)0.15868 (8)0.0406 (8)
C11.3578 (5)0.2888 (6)0.04310 (12)0.0800 (15)
H1B1.41970.28520.02130.120*
H1C1.41340.23750.06150.120*
H1D1.34550.38430.05050.120*
C20.8079 (6)0.4863 (5)0.03285 (12)0.0772 (15)
H2B0.81530.54020.01120.116*
H2C0.80830.54790.05310.116*
H2D0.70890.43320.03270.116*
C31.3004 (5)−0.0119 (5)0.12749 (11)0.0772 (15)
H3A1.4032−0.05810.12480.116*
H3B1.2171−0.08010.13170.116*
H3C1.30550.05130.14740.116*
C41.1200 (5)0.1366 (4)0.09509 (12)0.0446 (11)
C51.0041 (5)0.1274 (4)0.12166 (11)0.0429 (10)
H5A1.02030.06720.14090.052*
C60.8635 (4)0.2074 (4)0.11992 (10)0.0368 (9)
C70.8382 (4)0.2994 (4)0.09110 (10)0.0397 (10)
H7A0.74480.35400.09010.048*
C80.9539 (5)0.3074 (4)0.06435 (11)0.0422 (10)
C91.0951 (4)0.2256 (4)0.06576 (10)0.0446 (11)
C100.7391 (5)0.1932 (4)0.14767 (9)0.0374 (9)
C110.5910 (4)0.0866 (4)0.18929 (10)0.0338 (9)
C120.5161 (5)−0.0025 (4)0.21332 (10)0.0453 (11)
H12A0.5493−0.09480.21580.054*
C130.3906 (5)0.0513 (4)0.23340 (11)0.0532 (11)
H13A0.3387−0.00550.25000.064*
C140.3390 (5)0.1916 (5)0.22919 (12)0.0541 (11)
H14A0.25220.22420.24280.065*
C150.4139 (4)0.2808 (4)0.20549 (10)0.0508 (11)
H15A0.38010.37300.20310.061*
C160.5427 (4)0.2280 (4)0.18510 (10)0.0359 (10)
U11U22U33U12U13U23
O10.0561 (19)0.085 (2)0.0526 (18)−0.0022 (18)0.0156 (16)−0.0106 (18)
O20.061 (2)0.068 (2)0.048 (2)0.0042 (18)0.0086 (16)0.0139 (18)
O30.0506 (18)0.0599 (19)0.072 (2)0.0141 (17)0.0108 (18)0.0009 (18)
N10.0409 (19)0.0233 (17)0.052 (2)0.0028 (16)0.0007 (18)0.0074 (17)
N20.044 (2)0.0254 (17)0.052 (2)−0.0002 (18)0.0067 (17)−0.0009 (19)
C10.059 (3)0.100 (4)0.081 (3)−0.011 (3)0.019 (3)−0.009 (3)
C20.085 (4)0.074 (3)0.073 (4)0.019 (3)0.007 (3)0.029 (3)
C30.067 (3)0.096 (4)0.069 (3)0.034 (3)−0.013 (3)−0.004 (3)
C40.034 (2)0.042 (3)0.057 (3)0.004 (2)0.004 (2)−0.008 (2)
C50.042 (2)0.031 (2)0.056 (3)−0.001 (2)0.005 (2)0.002 (2)
C60.038 (2)0.030 (2)0.042 (2)−0.002 (2)0.005 (2)−0.001 (2)
C70.036 (2)0.032 (2)0.051 (3)0.000 (2)0.002 (2)−0.003 (2)
C80.045 (3)0.042 (2)0.040 (2)−0.003 (2)−0.001 (2)−0.003 (2)
C90.041 (3)0.053 (3)0.040 (2)−0.006 (2)0.007 (2)−0.004 (2)
C100.038 (2)0.027 (2)0.047 (2)−0.003 (2)−0.006 (2)0.003 (2)
C110.033 (2)0.030 (2)0.038 (2)−0.0061 (18)0.005 (2)−0.003 (2)
C120.047 (3)0.034 (2)0.054 (3)−0.007 (2)−0.002 (2)0.006 (2)
C130.054 (3)0.053 (3)0.053 (3)−0.010 (2)0.005 (2)0.010 (3)
C140.050 (3)0.051 (3)0.062 (3)−0.002 (3)0.017 (2)−0.005 (3)
C150.052 (3)0.037 (3)0.064 (3)0.008 (2)0.012 (2)−0.004 (2)
C160.040 (2)0.023 (2)0.044 (2)−0.0011 (19)0.001 (2)−0.001 (2)
C9—O11.379 (4)C4—C51.379 (5)
C1—O11.428 (5)C4—C91.403 (5)
C8—O21.377 (4)C5—C61.389 (5)
C2—O21.422 (4)C5—H5A0.9300
C4—O31.372 (4)C6—C71.407 (5)
C3—O31.427 (4)C6—C101.464 (5)
N1—C111.371 (4)C7—C81.383 (5)
N1—C101.383 (4)C7—H7A0.9300
N1—H1A0.8600C8—C91.401 (5)
N2—C101.329 (4)C11—C121.383 (5)
N2—C161.400 (4)C11—C161.419 (5)
C1—H1B0.9600C12—C131.376 (5)
C1—H1C0.9600C12—H12A0.9300
C1—H1D0.9600C13—C141.418 (5)
C2—H2B0.9600C13—H13A0.9300
C2—H2C0.9600C14—C151.376 (5)
C2—H2D0.9600C14—H14A0.9300
C3—H3A0.9600C15—C161.400 (5)
C3—H3B0.9600C15—H15A0.9300
C3—H3C0.9600
C9—O1—C1117.4 (3)C5—C6—C10119.9 (4)
C8—O2—C2118.2 (3)C7—C6—C10119.8 (3)
C4—O3—C3116.9 (3)C8—C7—C6119.1 (4)
C11—N1—C10107.7 (3)C8—C7—H7A120.5
C11—N1—H1A126.1C6—C7—H7A120.5
C10—N1—H1A126.1O2—C8—C7124.2 (4)
C10—N2—C16104.8 (3)O2—C8—C9114.9 (4)
O1—C1—H1B109.5C7—C8—C9120.8 (4)
O1—C1—H1C109.5O1—C9—C8118.9 (4)
H1B—C1—H1C109.5O1—C9—C4121.6 (4)
O1—C1—H1D109.5C8—C9—C4119.3 (4)
H1B—C1—H1D109.5N2—C10—N1112.4 (3)
H1C—C1—H1D109.5N2—C10—C6126.4 (3)
O2—C2—H2B109.5N1—C10—C6121.2 (3)
O2—C2—H2C109.5N1—C11—C12132.5 (4)
H2B—C2—H2C109.5N1—C11—C16105.1 (3)
O2—C2—H2D109.5C12—C11—C16122.4 (4)
H2B—C2—H2D109.5C13—C12—C11117.2 (4)
H2C—C2—H2D109.5C13—C12—H12A121.4
O3—C3—H3A109.5C11—C12—H12A121.4
O3—C3—H3B109.5C12—C13—C14121.3 (4)
H3A—C3—H3B109.5C12—C13—H13A119.4
O3—C3—H3C109.5C14—C13—H13A119.4
H3A—C3—H3C109.5C15—C14—C13121.7 (4)
H3B—C3—H3C109.5C15—C14—H14A119.2
O3—C4—C5123.5 (4)C13—C14—H14A119.2
O3—C4—C9116.4 (4)C14—C15—C16117.7 (4)
C5—C4—C9120.0 (4)C14—C15—H15A121.1
C4—C5—C6120.4 (4)C16—C15—H15A121.1
C4—C5—H5A119.8N2—C16—C15130.3 (3)
C6—C5—H5A119.8N2—C16—C11109.9 (3)
C5—C6—C7120.3 (3)C15—C16—C11119.8 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N2i0.862.072.918 (4)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N2i0.862.072.918 (4)169

Symmetry code: (i) .

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