| Literature DB >> 21202598 |
P S Pereira Silva1, S R Domingos, M Ramos Silva, J A Paixão, A Matos Beja.
Abstract
In the title compound, C(19)H(18)N(3) (+.)C(4)H(2)N(3)O(4) (-), the dihedral angles between the phenyl rings and the plane defined by the central guanidinium fragment are in the range 41.3 (1)-66.6 (1)°. The pyrimidine ring of the anion is distorted towards a boat conformation and the nitro group is rotated 11.4 (2)° out of the uracil plane. Hydrogen bonds assemble the ions in infinite helical chains along the b axis.Entities:
Year: 2008 PMID: 21202598 PMCID: PMC2961510 DOI: 10.1107/S1600536808014244
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H18N3+·C4H2N3O4– | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5110 reflections |
| θ = 2.3–21.6º | |
| µ = 0.10 mm−1 | |
| β = 123.456 (3)º | Block, yellow |
| 0.34 × 0.20 × 0.12 mm | |
| Bruker APEX2 CCD area-detector diffractometer | 5534 independent reflections |
| Radiation source: fine-focus sealed tube | 2650 reflections with |
| Monochromator: graphite | |
| θmax = 28.6º | |
| φ and ω scans | θmin = 2.0º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 2003) | |
| 47807 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| | |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.22 e Å−3 | |
| 5534 reflections | Δρmin = −0.17 e Å−3 |
| 299 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0068 (11) |
| Secondary atom site location: difference Fourier map |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O2 | 0.82985 (16) | −0.17695 (11) | 0.60642 (13) | 0.0729 (5) | |
| O4 | 0.61600 (16) | 0.07278 (11) | 0.59408 (15) | 0.0968 (6) | |
| O7 | 0.7653 (2) | 0.21285 (11) | 0.59093 (15) | 0.0949 (6) | |
| O8 | 0.9257 (2) | 0.19450 (12) | 0.55194 (16) | 0.0940 (6) | |
| N1 | 0.93683 (17) | −0.06007 (12) | 0.58600 (13) | 0.0581 (5) | |
| N3 | 0.72353 (18) | −0.04940 (13) | 0.59167 (16) | 0.0759 (6) | |
| H3 | 0.6532 | −0.0761 | 0.5911 | 0.091* | |
| N5 | 0.8406 (2) | 0.16564 (13) | 0.57455 (13) | 0.0658 (5) | |
| C2 | 0.8316 (2) | −0.09943 (17) | 0.59504 (16) | 0.0596 (6) | |
| C4 | 0.7147 (2) | 0.03782 (16) | 0.58914 (17) | 0.0668 (6) | |
| C5 | 0.8282 (2) | 0.07584 (14) | 0.57999 (14) | 0.0555 (5) | |
| C6 | 0.9311 (2) | 0.02398 (15) | 0.57896 (15) | 0.0585 (6) | |
| H6 | 1.0030 | 0.0506 | 0.5727 | 0.070* | |
| N6 | 0.93433 (16) | 0.28871 (10) | 0.33661 (12) | 0.0538 (4) | |
| H6A | 1.0086 | 0.2545 | 0.3590 | 0.065* | |
| N7 | 0.79767 (16) | 0.16933 (10) | 0.31325 (12) | 0.0503 (4) | |
| H7 | 0.8742 | 0.1468 | 0.3667 | 0.060* | |
| N8 | 0.67626 (16) | 0.29829 (10) | 0.24472 (12) | 0.0491 (4) | |
| H8 | 0.6759 | 0.3411 | 0.2101 | 0.059* | |
| C7 | 0.80155 (19) | 0.25245 (12) | 0.29824 (14) | 0.0464 (5) | |
| C8 | 0.9677 (2) | 0.37724 (13) | 0.34492 (14) | 0.0539 (5) | |
| C9 | 0.8938 (3) | 0.43773 (15) | 0.3642 (2) | 0.0768 (7) | |
| H9 | 0.8184 | 0.4218 | 0.3732 | 0.092* | |
| C10 | 0.9323 (4) | 0.52263 (18) | 0.3700 (2) | 0.1001 (10) | |
| H10 | 0.8806 | 0.5639 | 0.3811 | 0.120* | |
| C11 | 1.0463 (4) | 0.5467 (2) | 0.3594 (2) | 0.1051 (12) | |
| H11 | 1.0718 | 0.6038 | 0.3632 | 0.126* | |
| C12 | 1.1207 (3) | 0.4857 (2) | 0.3434 (2) | 0.0959 (10) | |
| H12 | 1.1990 | 0.5015 | 0.3374 | 0.115* | |
| C13 | 1.0833 (2) | 0.40133 (17) | 0.33588 (16) | 0.0702 (7) | |
| H13 | 1.1356 | 0.3605 | 0.3247 | 0.084* | |
| C14 | 0.67503 (19) | 0.11513 (11) | 0.24655 (15) | 0.0468 (5) | |
| C15 | 0.6368 (3) | 0.05200 (14) | 0.28837 (19) | 0.0765 (7) | |
| H15 | 0.6896 | 0.0452 | 0.3594 | 0.092* | |
| C16 | 0.5197 (4) | −0.00143 (18) | 0.2246 (2) | 0.1072 (11) | |
| H16 | 0.4934 | −0.0446 | 0.2526 | 0.129* | |
| C17 | 0.4422 (3) | 0.00873 (17) | 0.1204 (2) | 0.0877 (8) | |
| H17 | 0.3628 | −0.0273 | 0.0776 | 0.105* | |
| C18 | 0.4805 (2) | 0.07121 (15) | 0.07889 (18) | 0.0666 (6) | |
| H18 | 0.4269 | 0.0781 | 0.0078 | 0.080* | |
| C19 | 0.5977 (2) | 0.12417 (13) | 0.14139 (15) | 0.0535 (5) | |
| H19 | 0.6250 | 0.1662 | 0.1127 | 0.064* | |
| C20 | 0.54307 (19) | 0.28099 (11) | 0.24114 (14) | 0.0459 (5) | |
| C21 | 0.5506 (2) | 0.26333 (14) | 0.33038 (16) | 0.0584 (5) | |
| H21 | 0.6423 | 0.2616 | 0.3931 | 0.070* | |
| C22 | 0.4205 (3) | 0.24817 (15) | 0.3260 (2) | 0.0725 (6) | |
| H22 | 0.4244 | 0.2356 | 0.3858 | 0.087* | |
| C23 | 0.2860 (3) | 0.25168 (17) | 0.2335 (2) | 0.0795 (7) | |
| H23 | 0.1988 | 0.2411 | 0.2308 | 0.095* | |
| C24 | 0.2785 (2) | 0.27057 (17) | 0.1450 (2) | 0.0760 (7) | |
| H24 | 0.1864 | 0.2735 | 0.0826 | 0.091* | |
| C25 | 0.4079 (2) | 0.28527 (14) | 0.14842 (16) | 0.0605 (6) | |
| H25 | 0.4035 | 0.2980 | 0.0884 | 0.073* |
| O2 | 0.0549 (9) | 0.0732 (11) | 0.0938 (12) | 0.0013 (8) | 0.0430 (8) | −0.0117 (9) |
| O4 | 0.0486 (9) | 0.0987 (13) | 0.1444 (16) | −0.0064 (8) | 0.0541 (10) | −0.0593 (12) |
| O7 | 0.1289 (16) | 0.0814 (12) | 0.1126 (14) | 0.0391 (11) | 0.0908 (13) | 0.0146 (10) |
| O8 | 0.0851 (12) | 0.0926 (14) | 0.1211 (15) | 0.0113 (10) | 0.0675 (12) | 0.0081 (11) |
| N1 | 0.0447 (9) | 0.0748 (13) | 0.0567 (10) | 0.0156 (8) | 0.0290 (8) | 0.0017 (9) |
| N3 | 0.0438 (9) | 0.0791 (14) | 0.1104 (16) | −0.0068 (9) | 0.0462 (10) | −0.0360 (11) |
| N5 | 0.0622 (11) | 0.0797 (14) | 0.0520 (11) | 0.0232 (10) | 0.0293 (9) | 0.0050 (9) |
| C2 | 0.0385 (10) | 0.0779 (16) | 0.0564 (13) | 0.0058 (10) | 0.0224 (9) | −0.0146 (12) |
| C4 | 0.0348 (10) | 0.0810 (17) | 0.0710 (14) | 0.0039 (10) | 0.0206 (10) | −0.0295 (12) |
| C5 | 0.0441 (10) | 0.0706 (15) | 0.0443 (11) | 0.0153 (10) | 0.0196 (9) | −0.0054 (10) |
| C6 | 0.0468 (11) | 0.0790 (16) | 0.0500 (12) | 0.0149 (10) | 0.0270 (9) | 0.0049 (11) |
| N6 | 0.0370 (8) | 0.0558 (10) | 0.0650 (10) | −0.0021 (7) | 0.0260 (8) | −0.0019 (8) |
| N7 | 0.0370 (8) | 0.0462 (9) | 0.0559 (10) | 0.0036 (7) | 0.0182 (7) | 0.0055 (7) |
| N8 | 0.0393 (8) | 0.0468 (9) | 0.0625 (10) | 0.0031 (7) | 0.0289 (7) | 0.0130 (8) |
| C7 | 0.0377 (10) | 0.0504 (12) | 0.0524 (11) | −0.0005 (8) | 0.0257 (8) | 0.0006 (9) |
| C8 | 0.0458 (10) | 0.0578 (13) | 0.0475 (11) | −0.0093 (9) | 0.0191 (9) | −0.0011 (9) |
| C9 | 0.0752 (15) | 0.0629 (16) | 0.0913 (18) | −0.0108 (12) | 0.0452 (14) | −0.0139 (13) |
| C10 | 0.104 (2) | 0.0608 (17) | 0.101 (2) | −0.0072 (16) | 0.0347 (18) | −0.0097 (15) |
| C11 | 0.105 (2) | 0.070 (2) | 0.0763 (19) | −0.0331 (18) | 0.0098 (17) | 0.0112 (15) |
| C12 | 0.0807 (19) | 0.105 (2) | 0.0703 (18) | −0.0443 (18) | 0.0218 (15) | 0.0132 (16) |
| C13 | 0.0525 (12) | 0.0899 (18) | 0.0590 (13) | −0.0203 (12) | 0.0249 (10) | 0.0025 (12) |
| C14 | 0.0392 (9) | 0.0431 (11) | 0.0566 (12) | 0.0040 (8) | 0.0256 (9) | 0.0000 (9) |
| C15 | 0.0956 (18) | 0.0578 (14) | 0.0655 (15) | −0.0198 (13) | 0.0378 (13) | 0.0029 (11) |
| C16 | 0.137 (3) | 0.081 (2) | 0.092 (2) | −0.0555 (19) | 0.057 (2) | −0.0047 (16) |
| C17 | 0.0882 (18) | 0.0767 (18) | 0.088 (2) | −0.0355 (14) | 0.0420 (16) | −0.0208 (14) |
| C18 | 0.0613 (13) | 0.0670 (15) | 0.0630 (14) | −0.0035 (11) | 0.0288 (11) | −0.0089 (11) |
| C19 | 0.0505 (11) | 0.0527 (12) | 0.0600 (13) | 0.0007 (9) | 0.0321 (10) | 0.0009 (10) |
| C20 | 0.0417 (10) | 0.0421 (11) | 0.0577 (12) | 0.0052 (8) | 0.0299 (9) | 0.0059 (9) |
| C21 | 0.0543 (12) | 0.0613 (13) | 0.0646 (13) | 0.0073 (10) | 0.0359 (11) | 0.0101 (10) |
| C22 | 0.0781 (16) | 0.0782 (16) | 0.0897 (17) | 0.0069 (13) | 0.0643 (15) | 0.0110 (13) |
| C23 | 0.0579 (14) | 0.0906 (18) | 0.112 (2) | −0.0022 (12) | 0.0608 (16) | −0.0005 (15) |
| C24 | 0.0425 (11) | 0.1013 (19) | 0.0818 (17) | 0.0049 (11) | 0.0329 (11) | −0.0025 (14) |
| C25 | 0.0440 (11) | 0.0753 (15) | 0.0620 (13) | 0.0082 (10) | 0.0291 (10) | 0.0074 (11) |
| O2—C2 | 1.231 (3) | C11—C12 | 1.356 (4) |
| O4—C4 | 1.234 (2) | C11—H11 | 0.9300 |
| O7—N5 | 1.224 (2) | C12—C13 | 1.369 (4) |
| O8—N5 | 1.233 (2) | C12—H12 | 0.9300 |
| N1—C6 | 1.322 (3) | C13—H13 | 0.9300 |
| N1—C2 | 1.362 (3) | C14—C15 | 1.367 (3) |
| N3—C4 | 1.371 (3) | C14—C19 | 1.375 (3) |
| N3—C2 | 1.379 (3) | C15—C16 | 1.376 (3) |
| N3—H3 | 0.8600 | C15—H15 | 0.9300 |
| N5—C5 | 1.422 (3) | C16—C17 | 1.364 (4) |
| C4—C5 | 1.434 (3) | C16—H16 | 0.9300 |
| C5—C6 | 1.380 (3) | C17—C18 | 1.356 (3) |
| C6—H6 | 0.9300 | C17—H17 | 0.9300 |
| N6—C7 | 1.333 (2) | C18—C19 | 1.368 (3) |
| N6—C8 | 1.422 (2) | C18—H18 | 0.9300 |
| N6—H6A | 0.8600 | C19—H19 | 0.9300 |
| N7—C7 | 1.330 (2) | C20—C25 | 1.373 (3) |
| N7—C14 | 1.425 (2) | C20—C21 | 1.374 (3) |
| N7—H7 | 0.8600 | C21—C22 | 1.383 (3) |
| N8—C7 | 1.337 (2) | C21—H21 | 0.9300 |
| N8—C20 | 1.428 (2) | C22—C23 | 1.368 (3) |
| N8—H8 | 0.8600 | C22—H22 | 0.9300 |
| C8—C9 | 1.373 (3) | C23—C24 | 1.367 (3) |
| C8—C13 | 1.378 (3) | C23—H23 | 0.9300 |
| C9—C10 | 1.383 (4) | C24—C25 | 1.382 (3) |
| C9—H9 | 0.9300 | C24—H24 | 0.9300 |
| C10—C11 | 1.375 (5) | C25—H25 | 0.9300 |
| C10—H10 | 0.9300 | ||
| C6—N1—C2 | 117.20 (18) | C11—C12—C13 | 121.5 (3) |
| C4—N3—C2 | 127.8 (2) | C11—C12—H12 | 119.2 |
| C4—N3—H3 | 116.1 | C13—C12—H12 | 119.2 |
| C2—N3—H3 | 116.1 | C12—C13—C8 | 119.7 (3) |
| O7—N5—O8 | 121.2 (2) | C12—C13—H13 | 120.2 |
| O7—N5—C5 | 119.5 (2) | C8—C13—H13 | 120.2 |
| O8—N5—C5 | 119.33 (18) | C15—C14—C19 | 119.88 (18) |
| O2—C2—N1 | 122.85 (19) | C15—C14—N7 | 119.08 (18) |
| O2—C2—N3 | 119.2 (2) | C19—C14—N7 | 121.02 (17) |
| N1—C2—N3 | 117.9 (2) | C14—C15—C16 | 119.6 (2) |
| O4—C4—N3 | 119.4 (2) | C14—C15—H15 | 120.2 |
| O4—C4—C5 | 129.0 (2) | C16—C15—H15 | 120.2 |
| N3—C4—C5 | 111.65 (18) | C17—C16—C15 | 120.2 (2) |
| C6—C5—N5 | 118.7 (2) | C17—C16—H16 | 119.9 |
| C6—C5—C4 | 119.1 (2) | C15—C16—H16 | 119.9 |
| N5—C5—C4 | 122.10 (18) | C18—C17—C16 | 120.2 (2) |
| N1—C6—C5 | 126.0 (2) | C18—C17—H17 | 119.9 |
| N1—C6—H6 | 117.0 | C16—C17—H17 | 119.9 |
| C5—C6—H6 | 117.0 | C17—C18—C19 | 120.2 (2) |
| C7—N6—C8 | 127.70 (17) | C17—C18—H18 | 119.9 |
| C7—N6—H6A | 116.1 | C19—C18—H18 | 119.9 |
| C8—N6—H6A | 116.1 | C18—C19—C14 | 120.0 (2) |
| C7—N7—C14 | 124.30 (15) | C18—C19—H19 | 120.0 |
| C7—N7—H7 | 117.8 | C14—C19—H19 | 120.0 |
| C14—N7—H7 | 117.8 | C25—C20—C21 | 120.68 (18) |
| C7—N8—C20 | 124.48 (15) | C25—C20—N8 | 119.28 (18) |
| C7—N8—H8 | 117.8 | C21—C20—N8 | 119.99 (17) |
| C20—N8—H8 | 117.8 | C20—C21—C22 | 119.4 (2) |
| N7—C7—N6 | 118.00 (16) | C20—C21—H21 | 120.3 |
| N7—C7—N8 | 121.24 (16) | C22—C21—H21 | 120.3 |
| N6—C7—N8 | 120.75 (17) | C23—C22—C21 | 119.9 (2) |
| C9—C8—C13 | 119.7 (2) | C23—C22—H22 | 120.1 |
| C9—C8—N6 | 123.18 (19) | C21—C22—H22 | 120.1 |
| C13—C8—N6 | 117.1 (2) | C24—C23—C22 | 120.7 (2) |
| C8—C9—C10 | 119.4 (3) | C24—C23—H23 | 119.7 |
| C8—C9—H9 | 120.3 | C22—C23—H23 | 119.7 |
| C10—C9—H9 | 120.3 | C23—C24—C25 | 119.9 (2) |
| C11—C10—C9 | 120.7 (3) | C23—C24—H24 | 120.0 |
| C11—C10—H10 | 119.6 | C25—C24—H24 | 120.0 |
| C9—C10—H10 | 119.6 | C20—C25—C24 | 119.5 (2) |
| C12—C11—C10 | 118.9 (3) | C20—C25—H25 | 120.3 |
| C12—C11—H11 | 120.5 | C24—C25—H25 | 120.3 |
| C10—C11—H11 | 120.5 | ||
| C6—N1—C2—O2 | −176.90 (19) | C8—C9—C10—C11 | −1.8 (4) |
| C6—N1—C2—N3 | 2.8 (3) | C9—C10—C11—C12 | −0.1 (4) |
| C4—N3—C2—O2 | 173.4 (2) | C10—C11—C12—C13 | 1.1 (4) |
| C4—N3—C2—N1 | −6.2 (3) | C11—C12—C13—C8 | −0.2 (4) |
| C2—N3—C4—O4 | −174.6 (2) | C9—C8—C13—C12 | −1.7 (3) |
| C2—N3—C4—C5 | 5.8 (3) | N6—C8—C13—C12 | −179.87 (19) |
| O7—N5—C5—C6 | −169.02 (19) | C7—N7—C14—C15 | −141.8 (2) |
| O8—N5—C5—C6 | 12.0 (3) | C7—N7—C14—C19 | 39.8 (3) |
| O7—N5—C5—C4 | 9.4 (3) | C19—C14—C15—C16 | −0.8 (4) |
| O8—N5—C5—C4 | −169.6 (2) | N7—C14—C15—C16 | −179.2 (2) |
| O4—C4—C5—C6 | 178.0 (2) | C14—C15—C16—C17 | −0.2 (5) |
| N3—C4—C5—C6 | −2.4 (3) | C15—C16—C17—C18 | 0.4 (5) |
| O4—C4—C5—N5 | −0.4 (3) | C16—C17—C18—C19 | 0.3 (4) |
| N3—C4—C5—N5 | 179.21 (18) | C17—C18—C19—C14 | −1.3 (3) |
| C2—N1—C6—C5 | 0.1 (3) | C15—C14—C19—C18 | 1.5 (3) |
| N5—C5—C6—N1 | 178.24 (18) | N7—C14—C19—C18 | 179.85 (18) |
| C4—C5—C6—N1 | −0.2 (3) | C7—N8—C20—C25 | −136.65 (19) |
| C14—N7—C7—N6 | −152.77 (18) | C7—N8—C20—C21 | 45.7 (3) |
| C14—N7—C7—N8 | 26.0 (3) | C25—C20—C21—C22 | 1.2 (3) |
| C8—N6—C7—N7 | −168.86 (18) | N8—C20—C21—C22 | 178.88 (19) |
| C8—N6—C7—N8 | 12.4 (3) | C20—C21—C22—C23 | −0.6 (4) |
| C20—N8—C7—N7 | 31.5 (3) | C21—C22—C23—C24 | −0.4 (4) |
| C20—N8—C7—N6 | −149.75 (18) | C22—C23—C24—C25 | 0.8 (4) |
| C7—N6—C8—C9 | 34.2 (3) | C21—C20—C25—C24 | −0.8 (3) |
| C7—N6—C8—C13 | −147.7 (2) | N8—C20—C25—C24 | −178.5 (2) |
| C13—C8—C9—C10 | 2.7 (3) | C23—C24—C25—C20 | −0.2 (4) |
| N6—C8—C9—C10 | −179.3 (2) |
| H··· | ||||
| N6—H6A···O2i | 0.86 | 1.94 | 2.794 (2) | 174 |
| N7—H7···N1i | 0.86 | 2.21 | 2.934 (2) | 142 |
| N8—H8···O4ii | 0.86 | 2.05 | 2.887 (2) | 163 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N6—H6 | 0.86 | 1.94 | 2.794 (2) | 174 |
| N7—H7⋯N1i | 0.86 | 2.21 | 2.934 (2) | 142 |
| N8—H8⋯O4ii | 0.86 | 2.05 | 2.887 (2) | 163 |
Symmetry codes: (i) ; (ii) .