Literature DB >> 21202591

3,4-Dihydroxy-benzaldehyde thio-semi-carbazone.

Kong Wai Tan, Yang Farina, Chew Hee Ng, Mohd Jamil Maah, Seik Weng Ng.   

Abstract

The asymmetric unit of the title compound, C(8)H(9)N(3)O(2)S, contains three independent mol-ecules which are stacked approximately over each other. In the crystal structure, centrosymmetric pairs of mol-ecules are formed through inter-molecular hydr-oxy-hydr-oxy O-H⋯O and hydr-oxy-sulfur O-H⋯S hydrogen bonds which are, in turn, linked into a two-dimensional network by N-H⋯O(hydr-oxy) hydrogen bonds.

Entities:  

Year:  2008        PMID: 21202591      PMCID: PMC2961592          DOI: 10.1107/S160053680801386X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of 3,4-dihydroxy­benzaldehyde 4-phenyl­thio­semicarbazone, see: Swesi et al. (2006 ▶). For some metal complexes of the ligand, see: Zhu et al. (1991 ▶, 1997 ▶).

Experimental

Crystal data

C8H9N3O2S M = 211.24 Triclinic, a = 10.657 (2) Å b = 11.794 (2) Å c = 12.356 (2) Å α = 111.657 (2)° β = 104.082 (2)° γ = 90.929 (2)° V = 1390.2 (4) Å3 Z = 6 Mo Kα radiation μ = 0.33 mm−1 T = 100 (2) K 0.20 × 0.18 × 0.04 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.938, T max = 0.987 8792 measured reflections 6298 independent reflections 3727 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.189 S = 1.01 6298 reflections 397 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680801386X/lh2626sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680801386X/lh2626Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H9N3O2SZ = 6
Mr = 211.24F000 = 660
Triclinic, P1Dx = 1.514 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 10.657 (2) ÅCell parameters from 1478 reflections
b = 11.794 (2) Åθ = 2.7–27.8º
c = 12.356 (2) ŵ = 0.33 mm1
α = 111.657 (2)ºT = 100 (2) K
β = 104.082 (2)ºBlock, yellow
γ = 90.929 (2)º0.20 × 0.18 × 0.04 mm
V = 1390.2 (4) Å3
Bruker SMART APEX diffractometer6298 independent reflections
Radiation source: fine-focus sealed tube3727 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.028
T = 100(2) Kθmax = 27.5º
ω scansθmin = 1.8º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.938, Tmax = 0.987k = −15→9
8792 measured reflectionsl = −14→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.061H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.189  w = 1/[σ2(Fo2) + (0.1004P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.001
6298 reflectionsΔρmax = 0.51 e Å3
397 parametersΔρmin = −0.39 e Å3
6 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
S10.84547 (10)0.94314 (8)0.21803 (8)0.0401 (3)
S20.45653 (10)0.85179 (8)0.31556 (7)0.0359 (2)
S30.10237 (10)0.74686 (8)0.41416 (8)0.0390 (3)
O10.7414 (3)0.5896 (2)0.7057 (2)0.0440 (7)
H1O0.750 (4)0.566 (4)0.763 (3)0.066*
O20.7519 (2)0.7405 (2)0.9368 (2)0.0333 (6)
H2O0.769 (4)0.797 (3)1.0057 (17)0.050*
O30.4715 (4)0.5066 (2)0.8312 (2)0.0615 (9)
H3O0.476 (5)0.496 (5)0.895 (3)0.092*
O40.4659 (3)0.6536 (2)1.05646 (19)0.0359 (6)
H4O0.464 (4)0.710 (3)1.122 (2)0.054*
O50.2270 (3)0.4329 (2)0.9629 (2)0.0441 (7)
H5O0.232 (4)0.426 (4)1.029 (2)0.066*
O60.1658 (3)0.5600 (2)1.1704 (2)0.0370 (6)
H6O0.152 (4)0.609 (3)1.235 (2)0.056*
N10.7685 (3)0.7537 (3)0.2628 (2)0.0407 (8)
H1N10.74860.72100.31090.049*
H1N20.76220.70720.18680.049*
N20.8145 (3)0.9368 (2)0.4209 (2)0.0328 (7)
H2N0.83321.01720.45200.039*
N30.7922 (3)0.8755 (2)0.4912 (2)0.0316 (6)
N40.4570 (3)0.6598 (3)0.3786 (3)0.0438 (8)
H4N10.45310.62590.43050.053*
H4N20.46370.61410.30610.053*
N50.4424 (3)0.8421 (2)0.5209 (2)0.0294 (6)
H5N0.43790.92180.54600.035*
N60.4390 (3)0.7808 (2)0.5960 (2)0.0282 (6)
N70.1429 (3)0.5636 (3)0.4892 (3)0.0470 (9)
H7N10.14570.53090.54310.056*
H7N20.16070.52100.42050.056*
N80.0866 (3)0.7341 (3)0.6182 (2)0.0334 (7)
H8N0.06170.80820.63700.040*
N90.1000 (3)0.6760 (2)0.6982 (2)0.0299 (6)
C10.8075 (3)0.8720 (3)0.3043 (3)0.0300 (7)
C20.7942 (3)0.9415 (3)0.5994 (3)0.0306 (7)
H20.80721.02840.62580.037*
C30.7772 (3)0.8876 (3)0.6840 (3)0.0279 (7)
C40.7636 (3)0.7614 (3)0.6542 (3)0.0296 (7)
H40.76050.70700.57430.035*
C50.7545 (3)0.7147 (3)0.7389 (3)0.0293 (7)
C60.7597 (3)0.7934 (3)0.8565 (3)0.0257 (7)
C70.7714 (3)0.9180 (3)0.8871 (3)0.0319 (8)
H7C0.77370.97190.96700.038*
C80.7799 (3)0.9652 (3)0.8013 (3)0.0327 (8)
H80.78751.05160.82280.039*
C90.4526 (3)0.7787 (3)0.4095 (3)0.0273 (7)
C100.4204 (3)0.8443 (3)0.6983 (3)0.0288 (7)
H100.40540.92770.71640.035*
C110.4218 (3)0.7917 (3)0.7876 (3)0.0252 (7)
C120.4409 (3)0.6698 (3)0.7657 (3)0.0298 (7)
H120.44590.61640.68790.036*
C130.4526 (3)0.6261 (3)0.8557 (3)0.0321 (8)
C140.4480 (3)0.7039 (3)0.9711 (3)0.0257 (7)
C150.4243 (3)0.8234 (3)0.9921 (3)0.0316 (8)
H150.41720.87601.06940.038*
C160.4107 (3)0.8671 (3)0.9006 (3)0.0304 (7)
H160.39360.94950.91530.036*
C170.1122 (3)0.6761 (3)0.5111 (3)0.0306 (7)
C180.0760 (3)0.7363 (3)0.7984 (3)0.0286 (7)
H180.04650.81470.81200.034*
C190.0928 (3)0.6872 (3)0.8926 (3)0.0264 (7)
C200.1458 (3)0.5772 (3)0.8812 (3)0.0288 (7)
H200.16620.52950.80810.035*
C210.1686 (3)0.5376 (3)0.9745 (3)0.0291 (7)
C220.1375 (3)0.6051 (3)1.0814 (3)0.0270 (7)
C230.0804 (3)0.7116 (3)1.0922 (3)0.0295 (7)
H230.05560.75661.16370.035*
C240.0594 (3)0.7524 (3)0.9982 (3)0.0300 (7)
H240.02140.82641.00640.036*
U11U22U33U12U13U23
S10.0718 (7)0.0287 (5)0.0288 (5)0.0104 (4)0.0234 (4)0.0146 (4)
S20.0636 (6)0.0242 (4)0.0253 (4)0.0079 (4)0.0172 (4)0.0123 (4)
S30.0631 (6)0.0330 (5)0.0286 (5)0.0124 (4)0.0187 (4)0.0164 (4)
O10.083 (2)0.0205 (12)0.0354 (14)0.0112 (13)0.0242 (14)0.0123 (11)
O20.0527 (15)0.0269 (13)0.0263 (12)0.0067 (11)0.0144 (11)0.0144 (10)
O30.137 (3)0.0278 (15)0.0344 (15)0.0361 (17)0.0385 (18)0.0173 (13)
O40.0637 (17)0.0257 (13)0.0238 (12)0.0131 (12)0.0166 (12)0.0123 (10)
O50.083 (2)0.0266 (13)0.0343 (14)0.0200 (13)0.0278 (14)0.0167 (12)
O60.0633 (17)0.0276 (13)0.0252 (12)0.0146 (12)0.0162 (12)0.0127 (11)
N10.075 (2)0.0255 (16)0.0245 (15)0.0053 (15)0.0198 (15)0.0091 (13)
N20.0565 (19)0.0214 (14)0.0249 (14)0.0070 (13)0.0161 (13)0.0105 (12)
N30.0492 (18)0.0255 (15)0.0270 (14)0.0069 (13)0.0133 (13)0.0156 (12)
N40.085 (3)0.0232 (16)0.0285 (16)0.0122 (16)0.0230 (16)0.0106 (13)
N50.0500 (18)0.0194 (13)0.0235 (14)0.0081 (12)0.0140 (12)0.0107 (11)
N60.0444 (17)0.0221 (14)0.0230 (13)0.0032 (12)0.0105 (12)0.0131 (11)
N70.088 (3)0.0285 (17)0.0371 (17)0.0156 (17)0.0319 (17)0.0165 (14)
N80.0529 (19)0.0271 (15)0.0302 (15)0.0141 (13)0.0172 (13)0.0179 (13)
N90.0426 (17)0.0239 (14)0.0293 (14)0.0056 (12)0.0133 (12)0.0147 (12)
C10.043 (2)0.0262 (17)0.0261 (17)0.0123 (15)0.0121 (15)0.0143 (15)
C20.044 (2)0.0221 (16)0.0274 (17)0.0042 (15)0.0093 (15)0.0119 (14)
C30.0387 (19)0.0247 (17)0.0249 (16)0.0075 (14)0.0106 (14)0.0134 (14)
C40.042 (2)0.0221 (16)0.0261 (17)0.0081 (14)0.0122 (14)0.0087 (14)
C50.0412 (19)0.0190 (16)0.0316 (17)0.0082 (14)0.0128 (15)0.0119 (14)
C60.0326 (18)0.0267 (17)0.0235 (16)0.0092 (14)0.0116 (13)0.0132 (14)
C70.050 (2)0.0246 (17)0.0223 (16)0.0063 (15)0.0118 (15)0.0086 (14)
C80.049 (2)0.0179 (16)0.0316 (18)0.0037 (15)0.0121 (16)0.0094 (14)
C90.0363 (18)0.0234 (17)0.0245 (16)0.0080 (14)0.0089 (14)0.0111 (14)
C100.0357 (19)0.0256 (17)0.0293 (17)0.0079 (14)0.0114 (14)0.0137 (14)
C110.0315 (17)0.0240 (16)0.0250 (16)0.0059 (13)0.0099 (13)0.0133 (14)
C120.046 (2)0.0250 (17)0.0211 (15)0.0092 (15)0.0134 (14)0.0092 (14)
C130.050 (2)0.0209 (16)0.0306 (17)0.0120 (15)0.0156 (15)0.0126 (14)
C140.0371 (18)0.0245 (16)0.0211 (15)0.0062 (14)0.0111 (13)0.0128 (13)
C150.047 (2)0.0236 (17)0.0259 (17)0.0085 (15)0.0163 (15)0.0074 (14)
C160.048 (2)0.0191 (16)0.0296 (17)0.0078 (14)0.0133 (15)0.0132 (14)
C170.0397 (19)0.0259 (17)0.0288 (17)0.0040 (15)0.0122 (15)0.0116 (15)
C180.0333 (18)0.0267 (17)0.0289 (17)0.0061 (14)0.0096 (14)0.0131 (14)
C190.0337 (18)0.0221 (16)0.0242 (16)0.0019 (13)0.0079 (13)0.0098 (13)
C200.042 (2)0.0212 (16)0.0262 (16)0.0048 (14)0.0140 (14)0.0094 (14)
C210.0408 (19)0.0205 (16)0.0300 (17)0.0070 (14)0.0141 (14)0.0111 (14)
C220.0361 (18)0.0240 (16)0.0242 (16)0.0036 (14)0.0103 (14)0.0115 (14)
C230.0405 (19)0.0252 (17)0.0245 (16)0.0092 (15)0.0131 (14)0.0084 (14)
C240.0375 (19)0.0248 (17)0.0281 (17)0.0067 (14)0.0089 (14)0.0103 (14)
S1—C11.693 (3)N9—C181.270 (4)
S2—C91.689 (3)C2—C31.453 (4)
S3—C171.680 (3)C2—H20.9500
O1—C51.372 (4)C3—C41.391 (4)
O1—H1O0.837 (10)C3—C81.393 (4)
O2—C61.369 (4)C4—C51.372 (4)
O2—H2O0.840 (10)C4—H40.9500
O3—C131.358 (4)C5—C61.392 (4)
O3—H3O0.836 (10)C6—C71.371 (4)
O4—C141.367 (4)C7—C81.387 (4)
O4—H4O0.841 (10)C7—H7C0.9500
O5—C211.368 (4)C8—H80.9500
O5—H5O0.838 (10)C10—C111.450 (4)
O6—C221.364 (4)C10—H100.9500
O6—H6O0.844 (10)C11—C161.385 (4)
N1—C11.316 (4)C11—C121.390 (4)
N1—H1N10.8800C12—C131.369 (4)
N1—H1N20.8800C12—H120.9500
N2—C11.341 (4)C13—C141.396 (4)
N2—N31.375 (3)C14—C151.375 (4)
N2—H2N0.8800C15—C161.385 (4)
N3—C21.269 (4)C15—H150.9500
N4—C91.316 (4)C16—H160.9500
N4—H4N10.8800C18—C191.457 (4)
N4—H4N20.8800C18—H180.9500
N5—C91.335 (4)C19—C241.384 (4)
N5—N61.377 (3)C19—C201.397 (4)
N5—H5N0.8800C20—C211.368 (4)
N6—C101.276 (4)C20—H200.9500
N7—C171.316 (4)C21—C221.390 (4)
N7—H7N10.8800C22—C231.380 (4)
N7—H7N20.8800C23—C241.386 (4)
N8—C171.344 (4)C23—H230.9500
N8—N91.380 (3)C24—H240.9500
N8—H8N0.8800
C5—O1—H1O115 (3)C3—C8—H8119.6
C6—O2—H2O107 (3)N4—C9—N5116.7 (3)
C13—O3—H3O106 (4)N4—C9—S2123.5 (2)
C14—O4—H4O107 (3)N5—C9—S2119.8 (2)
C21—O5—H5O103 (3)N6—C10—C11121.2 (3)
C22—O6—H6O112 (3)N6—C10—H10119.4
C1—N1—H1N1120.0C11—C10—H10119.4
C1—N1—H1N2120.0C16—C11—C12119.0 (3)
H1N1—N1—H1N2120.0C16—C11—C10118.9 (3)
C1—N2—N3118.9 (3)C12—C11—C10122.0 (3)
C1—N2—H2N120.5C13—C12—C11120.3 (3)
N3—N2—H2N120.5C13—C12—H12119.8
C2—N3—N2116.4 (3)C11—C12—H12119.8
C9—N4—H4N1120.0O3—C13—C12118.8 (3)
C9—N4—H4N2120.0O3—C13—C14120.7 (3)
H4N1—N4—H4N2120.0C12—C13—C14120.5 (3)
C9—N5—N6118.9 (3)O4—C14—C15124.2 (3)
C9—N5—H5N120.6O4—C14—C13116.4 (3)
N6—N5—H5N120.6C15—C14—C13119.4 (3)
C10—N6—N5116.1 (3)C14—C15—C16120.0 (3)
C17—N7—H7N1120.0C14—C15—H15120.0
C17—N7—H7N2120.0C16—C15—H15120.0
H7N1—N7—H7N2120.0C15—C16—C11120.6 (3)
C17—N8—N9119.0 (3)C15—C16—H16119.7
C17—N8—H8N120.5C11—C16—H16119.7
N9—N8—H8N120.5N7—C17—N8115.9 (3)
C18—N9—N8115.9 (3)N7—C17—S3124.0 (3)
N1—C1—N2116.6 (3)N8—C17—S3120.0 (3)
N1—C1—S1123.3 (2)N9—C18—C19121.1 (3)
N2—C1—S1120.1 (2)N9—C18—H18119.5
N3—C2—C3121.7 (3)C19—C18—H18119.5
N3—C2—H2119.2C24—C19—C20118.6 (3)
C3—C2—H2119.2C24—C19—C18119.6 (3)
C4—C3—C8118.5 (3)C20—C19—C18121.8 (3)
C4—C3—C2122.7 (3)C21—C20—C19120.4 (3)
C8—C3—C2118.8 (3)C21—C20—H20119.8
C5—C4—C3120.7 (3)C19—C20—H20119.8
C5—C4—H4119.7O5—C21—C20119.0 (3)
C3—C4—H4119.7O5—C21—C22120.3 (3)
O1—C5—C4118.7 (3)C20—C21—C22120.6 (3)
O1—C5—C6121.0 (3)O6—C22—C23123.8 (3)
C4—C5—C6120.3 (3)O6—C22—C21116.6 (3)
O2—C6—C7123.0 (3)C23—C22—C21119.6 (3)
O2—C6—C5117.1 (3)C22—C23—C24119.5 (3)
C7—C6—C5119.9 (3)C22—C23—H23120.2
C6—C7—C8119.8 (3)C24—C23—H23120.2
C6—C7—H7C120.1C19—C24—C23121.2 (3)
C8—C7—H7C120.1C19—C24—H24119.4
C7—C8—C3120.8 (3)C23—C24—H24119.4
C7—C8—H8119.6
C1—N2—N3—C2−176.9 (3)C11—C12—C13—C14−1.3 (5)
C9—N5—N6—C10−175.5 (3)O3—C13—C14—O41.2 (5)
C17—N8—N9—C18179.2 (3)C12—C13—C14—O4−177.4 (3)
N3—N2—C1—N15.5 (5)O3—C13—C14—C15−177.8 (3)
N3—N2—C1—S1−175.4 (2)C12—C13—C14—C153.7 (5)
N2—N3—C2—C3−177.5 (3)O4—C14—C15—C16178.4 (3)
N3—C2—C3—C42.9 (5)C13—C14—C15—C16−2.7 (5)
N3—C2—C3—C8−179.7 (3)C14—C15—C16—C11−0.5 (5)
C8—C3—C4—C5−0.8 (5)C12—C11—C16—C152.9 (5)
C2—C3—C4—C5176.6 (3)C10—C11—C16—C15−173.6 (3)
C3—C4—C5—O1−179.9 (3)N9—N8—C17—N73.0 (5)
C3—C4—C5—C6−0.4 (5)N9—N8—C17—S3−177.6 (2)
O1—C5—C6—O20.4 (5)N8—N9—C18—C19−177.0 (3)
C4—C5—C6—O2−179.1 (3)N9—C18—C19—C24−176.7 (3)
O1—C5—C6—C7−179.3 (3)N9—C18—C19—C205.3 (5)
C4—C5—C6—C71.2 (5)C24—C19—C20—C21−2.5 (5)
O2—C6—C7—C8179.5 (3)C18—C19—C20—C21175.5 (3)
C5—C6—C7—C8−0.9 (5)C19—C20—C21—O5−176.6 (3)
C6—C7—C8—C3−0.3 (5)C19—C20—C21—C221.1 (5)
C4—C3—C8—C71.1 (5)O5—C21—C22—O6−1.2 (5)
C2—C3—C8—C7−176.4 (3)C20—C21—C22—O6−178.8 (3)
N6—N5—C9—N40.9 (5)O5—C21—C22—C23179.0 (3)
N6—N5—C9—S2179.8 (2)C20—C21—C22—C231.4 (5)
N5—N6—C10—C11−176.7 (3)O6—C22—C23—C24177.8 (3)
N6—C10—C11—C16175.3 (3)C21—C22—C23—C24−2.5 (5)
N6—C10—C11—C12−1.1 (5)C20—C19—C24—C231.4 (5)
C16—C11—C12—C13−2.0 (5)C18—C19—C24—C23−176.6 (3)
C10—C11—C12—C13174.4 (3)C22—C23—C24—C191.0 (5)
C11—C12—C13—O3−179.9 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1o···O6i0.84 (1)2.07 (3)2.784 (3)143 (4)
O2—H2o···S1ii0.84 (1)2.47 (1)3.300 (2)171 (4)
N1—H1n2···O5iii0.882.002.856 (4)163
O3—H3o···O4i0.84 (1)2.11 (4)2.732 (3)130 (4)
O4—H4o···S2ii0.84 (1)2.38 (1)3.219 (2)174 (4)
N4—H4n2···O3iii0.882.052.900 (4)162
O5—H5o···O2i0.84 (1)2.16 (4)2.742 (3)127 (4)
O6—H6o···S3ii0.84 (1)2.40 (1)3.244 (2)177 (4)
N7—H7n2···O1iii0.882.132.981 (4)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯O6i0.84 (1)2.07 (3)2.784 (3)143 (4)
O2—H2o⋯S1ii0.84 (1)2.47 (1)3.300 (2)171 (4)
N1—H1n2⋯O5iii0.882.002.856 (4)163
O3—H3o⋯O4i0.84 (1)2.11 (4)2.732 (3)130 (4)
O4—H4o⋯S2ii0.84 (1)2.38 (1)3.219 (2)174 (4)
N4—H4n2⋯O3iii0.882.052.900 (4)162
O5—H5o⋯O2i0.84 (1)2.16 (4)2.742 (3)127 (4)
O6—H6o⋯S3ii0.84 (1)2.40 (1)3.244 (2)177 (4)
N7—H7n2⋯O1iii0.882.132.981 (4)161

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-25

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Authors:  Hana Bashir Shawish; M Jamil Maah; Seik Weng Ng
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