Literature DB >> 21202582

Methyl 3-amino-4-butanamido-5-methyl-benzoate.

Xiang Li, Lian-Shan Yuan, Dan Wang, Cheng Yao.   

Abstract

The title compound, C(13)H(18)N(2)O(3), is an inter-mediate in the synthesis of compounds with medicinial applications. The crystal structure is stabilized by inter-molecular N-H⋯O, C-H⋯N and C-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21202582      PMCID: PMC2961411          DOI: 10.1107/S1600536808013408

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For related literature, see: Engeli et al. (2000 ▶); Goossens et al. (2003 ▶); Kintscher et al. (2004 ▶); Kurtz & Pravenec (2004 ▶); Ries et al. (1993 ▶).

Experimental

Crystal data

C13H18N2O3 M = 250.29 Monoclinic, a = 10.547 (2) Å b = 16.258 (3) Å c = 8.430 (2) Å β = 111.69 (3)° V = 1343.2 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 (2) K 0.40 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.965, T max = 0.991 2579 measured reflections 2404 independent reflections 1511 reflections with I > 2σ(I) R int = 0.028 3 standard reflections every 200 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.074 wR(F 2) = 0.174 S = 1.02 2404 reflections 158 parameters H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.40 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo,1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808013408/im2061sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808013408/im2061Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H18N2O3F000 = 536
Mr = 250.29Dx = 1.238 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 10.547 (2) Åθ = 10–13º
b = 16.258 (3) ŵ = 0.09 mm1
c = 8.430 (2) ÅT = 293 (2) K
β = 111.69 (3)ºBlock, colourless
V = 1343.2 (5) Å30.40 × 0.20 × 0.10 mm
Z = 4
Enraf–Nonius CAD-4 diffractometerRint = 0.028
Radiation source: fine-focus sealed tubeθmax = 25.2º
Monochromator: graphiteθmin = 2.1º
T = 293(2) Kh = −12→11
ω/2θ scansk = 0→19
Absorption correction: ψ scan(North et al., 1968)l = 0→10
Tmin = 0.965, Tmax = 0.9913 standard reflections
2579 measured reflections every 200 reflections
2404 independent reflections intensity decay: none
1511 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.075H-atom parameters constrained
wR(F2) = 0.174  w = 1/[σ2(Fo2) + (0.05P)2 + 1.5P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.002
2404 reflectionsΔρmax = 0.50 e Å3
158 parametersΔρmin = −0.40 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.7939 (3)0.28652 (17)0.4910 (3)0.0609 (8)
H1A0.78890.28930.38700.073*
O10.9151 (2)0.31431 (18)0.7622 (3)0.0722 (8)
C11.2201 (4)0.4441 (3)0.6344 (6)0.1018 (16)
H1B1.28260.47340.73050.153*
H1C1.17910.48180.54180.153*
H1D1.26850.40230.59940.153*
O20.3477 (2)0.05447 (17)0.6104 (4)0.0760 (8)
N20.7806 (3)0.11598 (19)0.5029 (4)0.0669 (8)
H2A0.77780.06320.50850.080*
H2B0.84690.13950.48450.080*
C21.1113 (4)0.4052 (3)0.6834 (5)0.084
H2C1.15550.37150.78360.100*
H2D1.06300.44870.71630.100*
O30.2717 (2)0.17791 (16)0.6464 (3)0.0690 (7)
C31.0098 (4)0.3540 (2)0.5540 (4)0.0620 (9)
H3A1.05700.30980.52130.074*
H3B0.96450.38720.45330.074*
C40.9036 (3)0.31730 (19)0.6119 (4)0.0483 (8)
C50.6835 (3)0.2489 (2)0.5237 (4)0.0522 (8)
C60.5855 (3)0.2967 (2)0.5521 (4)0.0543 (8)
C70.4796 (3)0.2576 (2)0.5839 (4)0.0537 (8)
H7A0.41410.28880.60610.064*
C80.4715 (3)0.1723 (2)0.5825 (3)0.0479 (8)
C90.5702 (3)0.1258 (2)0.5536 (4)0.0511 (8)
H9A0.56440.06870.55410.061*
C100.6789 (3)0.1628 (2)0.5235 (4)0.0515 (8)
C110.5897 (4)0.3891 (2)0.5480 (5)0.0723 (11)
H11A0.67660.40660.54780.108*
H11B0.57680.41090.64680.108*
H11C0.51850.40880.44670.108*
C120.3588 (3)0.1281 (2)0.6125 (4)0.0540 (8)
C130.1601 (4)0.1399 (3)0.6781 (5)0.0876 (13)
H13A0.10500.18170.70130.131*
H13B0.19530.10380.77460.131*
H13C0.10560.10900.57940.131*
U11U22U33U12U13U23
N10.0727 (19)0.078 (2)0.0357 (14)−0.0270 (16)0.0244 (14)−0.0037 (14)
O10.0547 (14)0.120 (2)0.0446 (13)−0.0178 (14)0.0212 (11)−0.0041 (13)
C10.088 (3)0.127 (4)0.099 (3)−0.049 (3)0.044 (3)−0.021 (3)
O20.0629 (16)0.0679 (18)0.106 (2)−0.0081 (13)0.0415 (15)0.0052 (15)
N20.0536 (17)0.074 (2)0.082 (2)−0.0098 (15)0.0355 (16)−0.0048 (17)
C20.0840.0840.0840.0000.0310.000
O30.0547 (14)0.0824 (18)0.0749 (17)−0.0004 (13)0.0296 (13)0.0048 (13)
C30.063 (2)0.072 (2)0.059 (2)−0.0144 (19)0.0328 (18)−0.0081 (18)
C40.0546 (19)0.0550 (19)0.0413 (17)0.0012 (16)0.0248 (15)−0.0036 (15)
C50.056 (2)0.069 (2)0.0284 (15)−0.0165 (17)0.0127 (14)−0.0038 (15)
C60.060 (2)0.060 (2)0.0363 (16)−0.0098 (17)0.0099 (15)0.0002 (15)
C70.0500 (19)0.061 (2)0.0455 (18)−0.0014 (16)0.0124 (15)0.0019 (16)
C80.0437 (17)0.061 (2)0.0325 (15)−0.0059 (15)0.0059 (13)0.0010 (14)
C90.0435 (18)0.0570 (19)0.0483 (18)−0.0042 (15)0.0118 (15)0.0038 (15)
C100.0456 (18)0.066 (2)0.0382 (16)−0.0081 (16)0.0102 (14)−0.0020 (15)
C110.082 (3)0.067 (2)0.066 (2)−0.010 (2)0.025 (2)0.0051 (19)
C120.0473 (19)0.069 (2)0.0418 (17)0.0004 (18)0.0121 (15)0.0052 (17)
C130.063 (2)0.123 (4)0.093 (3)0.004 (2)0.048 (2)0.020 (3)
N1—C41.325 (4)C3—H3A0.9700
N1—C51.430 (4)C3—H3B0.9700
N1—H1A0.8600C5—C61.384 (5)
O1—C41.229 (3)C5—C101.400 (5)
C1—C21.496 (5)C6—C71.394 (4)
C1—H1B0.9600C6—C111.503 (5)
C1—H1C0.9600C7—C81.391 (4)
C1—H1D0.9600C7—H7A0.9300
O2—C121.202 (4)C8—C91.379 (4)
N2—C101.378 (4)C8—C121.488 (4)
N2—H2A0.8600C9—C101.399 (4)
N2—H2B0.8600C9—H9A0.9300
C2—C31.472 (5)C11—H11A0.9600
C2—H2C0.9700C11—H11B0.9600
C2—H2D0.9700C11—H11C0.9600
O3—C121.333 (4)C13—H13A0.9600
O3—C131.439 (4)C13—H13B0.9600
C3—C41.500 (4)C13—H13C0.9600
C4—N1—C5123.7 (2)C5—C6—C7118.6 (3)
C4—N1—H1A118.1C5—C6—C11121.8 (3)
C5—N1—H1A118.1C7—C6—C11119.5 (3)
C2—C1—H1B109.5C8—C7—C6120.3 (3)
C2—C1—H1C109.5C8—C7—H7A119.8
H1B—C1—H1C109.5C6—C7—H7A119.8
C2—C1—H1D109.5C9—C8—C7120.0 (3)
H1B—C1—H1D109.5C9—C8—C12117.9 (3)
H1C—C1—H1D109.5C7—C8—C12122.1 (3)
C10—N2—H2A120.0C8—C9—C10121.3 (3)
C10—N2—H2B120.0C8—C9—H9A119.4
H2A—N2—H2B120.0C10—C9—H9A119.4
C3—C2—C1117.2 (3)N2—C10—C9120.9 (3)
C3—C2—H2C108.0N2—C10—C5121.7 (3)
C1—C2—H2C108.0C9—C10—C5117.4 (3)
C3—C2—H2D108.0C6—C11—H11A109.5
C1—C2—H2D108.0C6—C11—H11B109.5
H2C—C2—H2D107.2H11A—C11—H11B109.5
C12—O3—C13117.1 (3)C6—C11—H11C109.5
C2—C3—C4114.2 (3)H11A—C11—H11C109.5
C2—C3—H3A108.7H11B—C11—H11C109.5
C4—C3—H3A108.7O2—C12—O3122.5 (3)
C2—C3—H3B108.7O2—C12—C8123.9 (3)
C4—C3—H3B108.7O3—C12—C8113.6 (3)
H3A—C3—H3B107.6O3—C13—H13A109.5
O1—C4—N1120.2 (3)O3—C13—H13B109.5
O1—C4—C3123.4 (3)H13A—C13—H13B109.5
N1—C4—C3116.4 (3)O3—C13—H13C109.5
C6—C5—C10122.3 (3)H13A—C13—H13C109.5
C6—C5—N1120.4 (3)H13B—C13—H13C109.5
C10—C5—N1117.2 (3)
C1—C2—C3—C4−179.7 (4)C7—C8—C9—C10−0.7 (4)
C5—N1—C4—O10.2 (5)C12—C8—C9—C10179.7 (3)
C5—N1—C4—C3179.6 (3)C8—C9—C10—N2176.8 (3)
C2—C3—C4—O1−15.3 (5)C8—C9—C10—C50.0 (4)
C2—C3—C4—N1165.4 (3)C6—C5—C10—N2−176.9 (3)
C4—N1—C5—C679.5 (4)N1—C5—C10—N23.8 (4)
C4—N1—C5—C10−101.3 (4)C6—C5—C10—C9−0.1 (5)
C10—C5—C6—C70.9 (5)N1—C5—C10—C9−179.3 (2)
N1—C5—C6—C7−179.9 (3)C13—O3—C12—O2−1.1 (5)
C10—C5—C6—C11−178.5 (3)C13—O3—C12—C8−179.6 (3)
N1—C5—C6—C110.7 (5)C9—C8—C12—O2−1.2 (5)
C5—C6—C7—C8−1.6 (5)C7—C8—C12—O2179.2 (3)
C11—C6—C7—C8177.8 (3)C9—C8—C12—O3177.3 (3)
C6—C7—C8—C91.6 (5)C7—C8—C12—O3−2.4 (4)
C6—C7—C8—C12−178.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.862.603.141 (4)122
N2—H2A···O2ii0.862.333.077 (4)145
N2—H2B···N10.862.462.780 (4)103
N2—H2B···O1i0.862.363.089 (4)142
C11—H11A···N10.962.452.901 (5)108
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.862.603.141 (4)122
N2—H2A⋯O2ii0.862.333.077 (4)145
N2—H2B⋯N10.862.462.780 (4)103
N2—H2B⋯O1i0.862.363.089 (4)142
C11—H11A⋯N10.962.452.901 (5)108

Symmetry codes: (i) ; (ii) .

  6 in total

Review 1.  Possible involvement of the adipose tissue renin-angiotensin system in the pathophysiology of obesity and obesity-related disorders.

Authors:  G H Goossens; E E Blaak; M A van Baak
Journal:  Obes Rev       Date:  2003-02       Impact factor: 9.213

Review 2.  Antidiabetic mechanisms of angiotensin-converting enzyme inhibitors and angiotensin II receptor antagonists: beyond the renin-angiotensin system.

Authors:  Theodore W Kurtz; Michal Pravenec
Journal:  J Hypertens       Date:  2004-12       Impact factor: 4.844

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 4.  Physiology and pathophysiology of the adipose tissue renin-angiotensin system.

Authors:  S Engeli; R Negrel; A M Sharma
Journal:  Hypertension       Date:  2000-06       Impact factor: 10.190

Review 5.  Angiotensin II, PPAR-gamma and atherosclerosis.

Authors:  Ulrich Kintscher; Christopher J Lyon; Ronald E Law
Journal:  Front Biosci       Date:  2004-01-01

6.  6-Substituted benzimidazoles as new nonpeptide angiotensin II receptor antagonists: synthesis, biological activity, and structure-activity relationships.

Authors:  U J Ries; G Mihm; B Narr; K M Hasselbach; H Wittneben; M Entzeroth; J C van Meel; W Wienen; N H Hauel
Journal:  J Med Chem       Date:  1993-12-10       Impact factor: 7.446

  6 in total

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