| Literature DB >> 21202582 |
Xiang Li, Lian-Shan Yuan, Dan Wang, Cheng Yao.
Abstract
The title compound, C(13)H(18)N(2)O(3), is an inter-mediate in the synthesis of compounds with medicinial applications. The crystal structure is stabilized by inter-molecular N-H⋯O, C-H⋯N and C-H⋯O hydrogen bonds.Entities:
Year: 2008 PMID: 21202582 PMCID: PMC2961411 DOI: 10.1107/S1600536808013408
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H18N2O3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
| θ = 10–13º | |
| µ = 0.09 mm−1 | |
| β = 111.69 (3)º | Block, colourless |
| 0.40 × 0.20 × 0.10 mm | |
| Enraf–Nonius CAD-4 diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 25.2º |
| Monochromator: graphite | θmin = 2.1º |
| ω/2θ scans | |
| Absorption correction: ψ scan(North | |
| 3 standard reflections | |
| 2579 measured reflections | every 200 reflections |
| 2404 independent reflections | intensity decay: none |
| 1511 reflections with |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.002 | |
| 2404 reflections | Δρmax = 0.50 e Å−3 |
| 158 parameters | Δρmin = −0.40 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.7939 (3) | 0.28652 (17) | 0.4910 (3) | 0.0609 (8) | |
| H1A | 0.7889 | 0.2893 | 0.3870 | 0.073* | |
| O1 | 0.9151 (2) | 0.31431 (18) | 0.7622 (3) | 0.0722 (8) | |
| C1 | 1.2201 (4) | 0.4441 (3) | 0.6344 (6) | 0.1018 (16) | |
| H1B | 1.2826 | 0.4734 | 0.7305 | 0.153* | |
| H1C | 1.1791 | 0.4818 | 0.5418 | 0.153* | |
| H1D | 1.2685 | 0.4023 | 0.5994 | 0.153* | |
| O2 | 0.3477 (2) | 0.05447 (17) | 0.6104 (4) | 0.0760 (8) | |
| N2 | 0.7806 (3) | 0.11598 (19) | 0.5029 (4) | 0.0669 (8) | |
| H2A | 0.7778 | 0.0632 | 0.5085 | 0.080* | |
| H2B | 0.8469 | 0.1395 | 0.4845 | 0.080* | |
| C2 | 1.1113 (4) | 0.4052 (3) | 0.6834 (5) | 0.084 | |
| H2C | 1.1555 | 0.3715 | 0.7836 | 0.100* | |
| H2D | 1.0630 | 0.4487 | 0.7163 | 0.100* | |
| O3 | 0.2717 (2) | 0.17791 (16) | 0.6464 (3) | 0.0690 (7) | |
| C3 | 1.0098 (4) | 0.3540 (2) | 0.5540 (4) | 0.0620 (9) | |
| H3A | 1.0570 | 0.3098 | 0.5213 | 0.074* | |
| H3B | 0.9645 | 0.3872 | 0.4533 | 0.074* | |
| C4 | 0.9036 (3) | 0.31730 (19) | 0.6119 (4) | 0.0483 (8) | |
| C5 | 0.6835 (3) | 0.2489 (2) | 0.5237 (4) | 0.0522 (8) | |
| C6 | 0.5855 (3) | 0.2967 (2) | 0.5521 (4) | 0.0543 (8) | |
| C7 | 0.4796 (3) | 0.2576 (2) | 0.5839 (4) | 0.0537 (8) | |
| H7A | 0.4141 | 0.2888 | 0.6061 | 0.064* | |
| C8 | 0.4715 (3) | 0.1723 (2) | 0.5825 (3) | 0.0479 (8) | |
| C9 | 0.5702 (3) | 0.1258 (2) | 0.5536 (4) | 0.0511 (8) | |
| H9A | 0.5644 | 0.0687 | 0.5541 | 0.061* | |
| C10 | 0.6789 (3) | 0.1628 (2) | 0.5235 (4) | 0.0515 (8) | |
| C11 | 0.5897 (4) | 0.3891 (2) | 0.5480 (5) | 0.0723 (11) | |
| H11A | 0.6766 | 0.4066 | 0.5478 | 0.108* | |
| H11B | 0.5768 | 0.4109 | 0.6468 | 0.108* | |
| H11C | 0.5185 | 0.4088 | 0.4467 | 0.108* | |
| C12 | 0.3588 (3) | 0.1281 (2) | 0.6125 (4) | 0.0540 (8) | |
| C13 | 0.1601 (4) | 0.1399 (3) | 0.6781 (5) | 0.0876 (13) | |
| H13A | 0.1050 | 0.1817 | 0.7013 | 0.131* | |
| H13B | 0.1953 | 0.1038 | 0.7746 | 0.131* | |
| H13C | 0.1056 | 0.1090 | 0.5794 | 0.131* |
| N1 | 0.0727 (19) | 0.078 (2) | 0.0357 (14) | −0.0270 (16) | 0.0244 (14) | −0.0037 (14) |
| O1 | 0.0547 (14) | 0.120 (2) | 0.0446 (13) | −0.0178 (14) | 0.0212 (11) | −0.0041 (13) |
| C1 | 0.088 (3) | 0.127 (4) | 0.099 (3) | −0.049 (3) | 0.044 (3) | −0.021 (3) |
| O2 | 0.0629 (16) | 0.0679 (18) | 0.106 (2) | −0.0081 (13) | 0.0415 (15) | 0.0052 (15) |
| N2 | 0.0536 (17) | 0.074 (2) | 0.082 (2) | −0.0098 (15) | 0.0355 (16) | −0.0048 (17) |
| C2 | 0.084 | 0.084 | 0.084 | 0.000 | 0.031 | 0.000 |
| O3 | 0.0547 (14) | 0.0824 (18) | 0.0749 (17) | −0.0004 (13) | 0.0296 (13) | 0.0048 (13) |
| C3 | 0.063 (2) | 0.072 (2) | 0.059 (2) | −0.0144 (19) | 0.0328 (18) | −0.0081 (18) |
| C4 | 0.0546 (19) | 0.0550 (19) | 0.0413 (17) | 0.0012 (16) | 0.0248 (15) | −0.0036 (15) |
| C5 | 0.056 (2) | 0.069 (2) | 0.0284 (15) | −0.0165 (17) | 0.0127 (14) | −0.0038 (15) |
| C6 | 0.060 (2) | 0.060 (2) | 0.0363 (16) | −0.0098 (17) | 0.0099 (15) | 0.0002 (15) |
| C7 | 0.0500 (19) | 0.061 (2) | 0.0455 (18) | −0.0014 (16) | 0.0124 (15) | 0.0019 (16) |
| C8 | 0.0437 (17) | 0.061 (2) | 0.0325 (15) | −0.0059 (15) | 0.0059 (13) | 0.0010 (14) |
| C9 | 0.0435 (18) | 0.0570 (19) | 0.0483 (18) | −0.0042 (15) | 0.0118 (15) | 0.0038 (15) |
| C10 | 0.0456 (18) | 0.066 (2) | 0.0382 (16) | −0.0081 (16) | 0.0102 (14) | −0.0020 (15) |
| C11 | 0.082 (3) | 0.067 (2) | 0.066 (2) | −0.010 (2) | 0.025 (2) | 0.0051 (19) |
| C12 | 0.0473 (19) | 0.069 (2) | 0.0418 (17) | 0.0004 (18) | 0.0121 (15) | 0.0052 (17) |
| C13 | 0.063 (2) | 0.123 (4) | 0.093 (3) | 0.004 (2) | 0.048 (2) | 0.020 (3) |
| N1—C4 | 1.325 (4) | C3—H3A | 0.9700 |
| N1—C5 | 1.430 (4) | C3—H3B | 0.9700 |
| N1—H1A | 0.8600 | C5—C6 | 1.384 (5) |
| O1—C4 | 1.229 (3) | C5—C10 | 1.400 (5) |
| C1—C2 | 1.496 (5) | C6—C7 | 1.394 (4) |
| C1—H1B | 0.9600 | C6—C11 | 1.503 (5) |
| C1—H1C | 0.9600 | C7—C8 | 1.391 (4) |
| C1—H1D | 0.9600 | C7—H7A | 0.9300 |
| O2—C12 | 1.202 (4) | C8—C9 | 1.379 (4) |
| N2—C10 | 1.378 (4) | C8—C12 | 1.488 (4) |
| N2—H2A | 0.8600 | C9—C10 | 1.399 (4) |
| N2—H2B | 0.8600 | C9—H9A | 0.9300 |
| C2—C3 | 1.472 (5) | C11—H11A | 0.9600 |
| C2—H2C | 0.9700 | C11—H11B | 0.9600 |
| C2—H2D | 0.9700 | C11—H11C | 0.9600 |
| O3—C12 | 1.333 (4) | C13—H13A | 0.9600 |
| O3—C13 | 1.439 (4) | C13—H13B | 0.9600 |
| C3—C4 | 1.500 (4) | C13—H13C | 0.9600 |
| C4—N1—C5 | 123.7 (2) | C5—C6—C7 | 118.6 (3) |
| C4—N1—H1A | 118.1 | C5—C6—C11 | 121.8 (3) |
| C5—N1—H1A | 118.1 | C7—C6—C11 | 119.5 (3) |
| C2—C1—H1B | 109.5 | C8—C7—C6 | 120.3 (3) |
| C2—C1—H1C | 109.5 | C8—C7—H7A | 119.8 |
| H1B—C1—H1C | 109.5 | C6—C7—H7A | 119.8 |
| C2—C1—H1D | 109.5 | C9—C8—C7 | 120.0 (3) |
| H1B—C1—H1D | 109.5 | C9—C8—C12 | 117.9 (3) |
| H1C—C1—H1D | 109.5 | C7—C8—C12 | 122.1 (3) |
| C10—N2—H2A | 120.0 | C8—C9—C10 | 121.3 (3) |
| C10—N2—H2B | 120.0 | C8—C9—H9A | 119.4 |
| H2A—N2—H2B | 120.0 | C10—C9—H9A | 119.4 |
| C3—C2—C1 | 117.2 (3) | N2—C10—C9 | 120.9 (3) |
| C3—C2—H2C | 108.0 | N2—C10—C5 | 121.7 (3) |
| C1—C2—H2C | 108.0 | C9—C10—C5 | 117.4 (3) |
| C3—C2—H2D | 108.0 | C6—C11—H11A | 109.5 |
| C1—C2—H2D | 108.0 | C6—C11—H11B | 109.5 |
| H2C—C2—H2D | 107.2 | H11A—C11—H11B | 109.5 |
| C12—O3—C13 | 117.1 (3) | C6—C11—H11C | 109.5 |
| C2—C3—C4 | 114.2 (3) | H11A—C11—H11C | 109.5 |
| C2—C3—H3A | 108.7 | H11B—C11—H11C | 109.5 |
| C4—C3—H3A | 108.7 | O2—C12—O3 | 122.5 (3) |
| C2—C3—H3B | 108.7 | O2—C12—C8 | 123.9 (3) |
| C4—C3—H3B | 108.7 | O3—C12—C8 | 113.6 (3) |
| H3A—C3—H3B | 107.6 | O3—C13—H13A | 109.5 |
| O1—C4—N1 | 120.2 (3) | O3—C13—H13B | 109.5 |
| O1—C4—C3 | 123.4 (3) | H13A—C13—H13B | 109.5 |
| N1—C4—C3 | 116.4 (3) | O3—C13—H13C | 109.5 |
| C6—C5—C10 | 122.3 (3) | H13A—C13—H13C | 109.5 |
| C6—C5—N1 | 120.4 (3) | H13B—C13—H13C | 109.5 |
| C10—C5—N1 | 117.2 (3) | ||
| C1—C2—C3—C4 | −179.7 (4) | C7—C8—C9—C10 | −0.7 (4) |
| C5—N1—C4—O1 | 0.2 (5) | C12—C8—C9—C10 | 179.7 (3) |
| C5—N1—C4—C3 | 179.6 (3) | C8—C9—C10—N2 | 176.8 (3) |
| C2—C3—C4—O1 | −15.3 (5) | C8—C9—C10—C5 | 0.0 (4) |
| C2—C3—C4—N1 | 165.4 (3) | C6—C5—C10—N2 | −176.9 (3) |
| C4—N1—C5—C6 | 79.5 (4) | N1—C5—C10—N2 | 3.8 (4) |
| C4—N1—C5—C10 | −101.3 (4) | C6—C5—C10—C9 | −0.1 (5) |
| C10—C5—C6—C7 | 0.9 (5) | N1—C5—C10—C9 | −179.3 (2) |
| N1—C5—C6—C7 | −179.9 (3) | C13—O3—C12—O2 | −1.1 (5) |
| C10—C5—C6—C11 | −178.5 (3) | C13—O3—C12—C8 | −179.6 (3) |
| N1—C5—C6—C11 | 0.7 (5) | C9—C8—C12—O2 | −1.2 (5) |
| C5—C6—C7—C8 | −1.6 (5) | C7—C8—C12—O2 | 179.2 (3) |
| C11—C6—C7—C8 | 177.8 (3) | C9—C8—C12—O3 | 177.3 (3) |
| C6—C7—C8—C9 | 1.6 (5) | C7—C8—C12—O3 | −2.4 (4) |
| C6—C7—C8—C12 | −178.8 (3) |
| H··· | ||||
| N1—H1A···O1i | 0.86 | 2.60 | 3.141 (4) | 122 |
| N2—H2A···O2ii | 0.86 | 2.33 | 3.077 (4) | 145 |
| N2—H2B···N1 | 0.86 | 2.46 | 2.780 (4) | 103 |
| N2—H2B···O1i | 0.86 | 2.36 | 3.089 (4) | 142 |
| C11—H11A···N1 | 0.96 | 2.45 | 2.901 (5) | 108 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.60 | 3.141 (4) | 122 |
| N2—H2 | 0.86 | 2.33 | 3.077 (4) | 145 |
| N2—H2 | 0.86 | 2.46 | 2.780 (4) | 103 |
| N2—H2 | 0.86 | 2.36 | 3.089 (4) | 142 |
| C11—H11 | 0.96 | 2.45 | 2.901 (5) | 108 |
Symmetry codes: (i) ; (ii) .