Literature DB >> 21202571

(S)-N-(1-Hydroxy-methyl-2-methyl-prop-yl)-2-methoxy-benzamide.

Jihong Li1, Wenhai Wang, Jingbo Lan, Jingsong You.   

Abstract

The title compound, C(13)H(19)NO(3), is an important synthetic inter-mediate. Weak O-H⋯O and N-H⋯O hydrogen bonds enhance the stability of the crystal structure.

Entities:  

Year:  2008        PMID: 21202571      PMCID: PMC2961408          DOI: 10.1107/S160053680801009X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Ma & You (2007 ▶); Rechavi & Lemaire (2002 ▶).

Experimental

Crystal data

C13H19NO3 M = 237.29 Orthorhombic, a = 9.015 (4) Å b = 10.386 (4) Å c = 14.005 (4) Å V = 1311.3 (9) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 291 (2) K 0.50 × 0.44 × 0.40 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 1457 measured reflections 1397 independent reflections 848 reflections with I > 2σ(I) R int = 0.010 3 standard reflections every 120 reflections intensity decay: 0.4%

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.136 S = 1.02 1397 reflections 164 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.14 e Å−3 Data collection: DIFRAC (Gabe & White, 1993 ▶); cell refinement: DIFRAC; data reduction: NRCVAX (Gabe et al., 1989 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680801009X/er2052sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680801009X/er2052Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H19NO3F000 = 512
Mr = 237.29Dx = 1.202 Mg m3
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 25 reflections
a = 9.015 (4) Åθ = 4.5–6.7º
b = 10.386 (4) ŵ = 0.09 mm1
c = 14.005 (4) ÅT = 291 (2) K
V = 1311.3 (9) Å3Block, colourless
Z = 40.50 × 0.44 × 0.40 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.010
Radiation source: fine-focus sealed tubeθmax = 25.5º
Monochromator: graphiteθmin = 2.4º
T = 291(2) Kh = −3→10
ω/2θ scansk = −3→12
Absorption correction: nonel = −5→16
1457 measured reflections3 standard reflections
1397 independent reflections every 120 reflections
848 reflections with I > 2σ(I) intensity decay: 0.4%
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.045  w = 1/[σ2(Fo2) + (0.0778P)2 + 0.0096P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.136(Δ/σ)max < 0.001
S = 1.02Δρmax = 0.21 e Å3
1397 reflectionsΔρmin = −0.14 e Å3
164 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.069 (8)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1432 (3)0.3872 (3)0.16126 (19)0.0666 (8)
O20.5192 (3)0.3286 (3)−0.00264 (18)0.0703 (8)
O30.2632 (4)0.0046 (3)−0.0111 (2)0.0810 (10)
H30.19450.0562−0.01400.097*
N10.3536 (3)0.2340 (2)0.0926 (2)0.0487 (8)
H1N10.27110.24330.12270.058*
C10.1842 (4)0.4786 (3)0.0963 (3)0.0514 (9)
C20.1074 (5)0.5935 (4)0.0851 (3)0.0709 (12)
H20.02400.60990.12230.085*
C30.1535 (6)0.6826 (4)0.0201 (4)0.0878 (16)
H3A0.10090.75910.01330.105*
C40.2760 (6)0.6610 (4)−0.0355 (4)0.0929 (18)
H40.30780.7226−0.07910.112*
C50.3519 (5)0.5457 (4)−0.0255 (3)0.0745 (13)
H50.43370.5300−0.06420.089*
C60.3096 (4)0.4533 (3)0.0402 (3)0.0489 (9)
C70.0018 (6)0.3961 (7)0.2048 (3)0.109 (2)
H7A−0.00380.47390.24160.163*
H7B−0.01300.32330.24600.163*
H7C−0.07350.39700.15640.163*
C80.4020 (4)0.3328 (3)0.0425 (2)0.0459 (9)
C90.4288 (4)0.1097 (3)0.1012 (2)0.0456 (8)
H90.50500.10600.05140.055*
C100.3202 (5)0.0025 (3)0.0824 (3)0.0609 (10)
H10A0.3691−0.07940.09320.073*
H10B0.23870.00910.12730.073*
C110.5075 (5)0.0978 (4)0.1981 (3)0.0632 (11)
H110.55150.01150.20020.076*
C120.6339 (6)0.1925 (5)0.2074 (4)0.0939 (16)
H12A0.59570.27870.20450.141*
H12B0.70310.17940.15620.141*
H12C0.68320.17960.26740.141*
C130.4068 (6)0.1084 (6)0.2833 (3)0.107 (2)
H13A0.46300.09460.34060.160*
H13B0.32990.04470.27880.160*
H13C0.36310.19260.28490.160*
U11U22U33U12U13U23
O10.0560 (16)0.0735 (18)0.0704 (16)0.0177 (16)0.0102 (13)0.0020 (15)
O20.0553 (16)0.0652 (18)0.0903 (18)−0.0022 (15)0.0249 (16)0.0137 (16)
O30.072 (2)0.071 (2)0.099 (2)0.0007 (16)−0.0180 (18)−0.0113 (17)
N10.0369 (15)0.0481 (16)0.0610 (17)0.0057 (15)0.0078 (14)0.0039 (14)
C10.050 (2)0.046 (2)0.058 (2)−0.0001 (18)−0.0117 (19)−0.0054 (18)
C20.064 (3)0.060 (3)0.089 (3)0.015 (2)−0.016 (2)−0.019 (2)
C30.070 (3)0.048 (2)0.146 (4)0.002 (2)−0.043 (3)0.008 (3)
C40.067 (3)0.059 (3)0.152 (5)−0.011 (3)−0.030 (3)0.047 (3)
C50.053 (2)0.066 (2)0.104 (3)−0.010 (2)−0.011 (2)0.031 (3)
C60.044 (2)0.0442 (18)0.059 (2)−0.0051 (17)−0.0149 (17)0.0013 (17)
C70.077 (3)0.156 (6)0.094 (3)0.036 (4)0.030 (3)0.020 (4)
C80.037 (2)0.046 (2)0.054 (2)−0.0041 (17)−0.0023 (16)0.0044 (18)
C90.0387 (18)0.0447 (19)0.0534 (19)0.0069 (17)0.0040 (15)−0.0004 (17)
C100.053 (2)0.050 (2)0.080 (3)0.0044 (19)0.000 (2)0.004 (2)
C110.062 (3)0.061 (3)0.067 (2)0.016 (2)−0.009 (2)0.011 (2)
C120.096 (3)0.093 (3)0.093 (3)0.000 (3)−0.037 (3)−0.011 (3)
C130.120 (4)0.146 (5)0.054 (2)0.031 (5)0.004 (3)0.016 (3)
O1—C11.365 (4)C6—C81.504 (5)
O1—C71.416 (5)C7—H7A0.9600
O2—C81.232 (4)C7—H7B0.9600
O3—C101.406 (5)C7—H7C0.9600
O3—H30.8200C9—C101.506 (5)
N1—C81.318 (4)C9—C111.537 (5)
N1—C91.463 (4)C9—H90.9800
N1—H1N10.8600C10—H10A0.9700
C1—C21.389 (5)C10—H10B0.9700
C1—C61.402 (5)C11—C131.503 (6)
C2—C31.363 (6)C11—C121.511 (6)
C2—H20.9300C11—H110.9800
C3—C41.369 (7)C12—H12A0.9600
C3—H3A0.9300C12—H12B0.9600
C4—C51.386 (6)C12—H12C0.9600
C4—H40.9300C13—H13A0.9600
C5—C61.383 (5)C13—H13B0.9600
C5—H50.9300C13—H13C0.9600
C1—O1—C7119.1 (4)N1—C8—C6118.4 (3)
C10—O3—H3109.5N1—C9—C10109.7 (3)
C8—N1—C9125.3 (3)N1—C9—C11111.0 (3)
C8—N1—H1N1117.4C10—C9—C11113.3 (3)
C9—N1—H1N1117.4N1—C9—H9107.5
O1—C1—C2122.5 (4)C10—C9—H9107.5
O1—C1—C6117.5 (3)C11—C9—H9107.5
C2—C1—C6120.0 (4)O3—C10—C9112.9 (3)
C3—C2—C1120.4 (4)O3—C10—H10A109.0
C3—C2—H2119.8C9—C10—H10A109.0
C1—C2—H2119.8O3—C10—H10B109.0
C2—C3—C4121.0 (4)C9—C10—H10B109.0
C2—C3—H3A119.5H10A—C10—H10B107.8
C4—C3—H3A119.5C13—C11—C12109.8 (4)
C3—C4—C5118.8 (4)C13—C11—C9114.6 (3)
C3—C4—H4120.6C12—C11—C9111.8 (3)
C5—C4—H4120.6C13—C11—H11106.7
C6—C5—C4122.0 (5)C12—C11—H11106.7
C6—C5—H5119.0C9—C11—H11106.7
C4—C5—H5119.0C11—C12—H12A109.5
C5—C6—C1117.7 (4)C11—C12—H12B109.5
C5—C6—C8116.0 (3)H12A—C12—H12B109.5
C1—C6—C8126.2 (3)C11—C12—H12C109.5
O1—C7—H7A109.5H12A—C12—H12C109.5
O1—C7—H7B109.5H12B—C12—H12C109.5
H7A—C7—H7B109.5C11—C13—H13A109.5
O1—C7—H7C109.5C11—C13—H13B109.5
H7A—C7—H7C109.5H13A—C13—H13B109.5
H7B—C7—H7C109.5C11—C13—H13C109.5
O2—C8—N1122.0 (3)H13A—C13—H13C109.5
O2—C8—C6119.6 (3)H13B—C13—H13C109.5
C7—O1—C1—C213.4 (5)C9—N1—C8—C6179.2 (3)
C7—O1—C1—C6−167.0 (4)C5—C6—C8—O29.9 (5)
O1—C1—C2—C3179.3 (3)C1—C6—C8—O2−171.7 (3)
C6—C1—C2—C3−0.3 (6)C5—C6—C8—N1−169.6 (3)
C1—C2—C3—C4−0.0 (6)C1—C6—C8—N18.8 (5)
C2—C3—C4—C50.9 (7)C8—N1—C9—C10−130.9 (4)
C3—C4—C5—C6−1.5 (7)C8—N1—C9—C11103.2 (4)
C4—C5—C6—C11.2 (6)N1—C9—C10—O363.2 (4)
C4—C5—C6—C8179.7 (4)C11—C9—C10—O3−172.2 (3)
O1—C1—C6—C5−179.8 (3)N1—C9—C11—C1359.7 (4)
C2—C1—C6—C5−0.2 (5)C10—C9—C11—C13−64.2 (5)
O1—C1—C6—C81.8 (5)N1—C9—C11—C12−66.1 (4)
C2—C1—C6—C8−178.6 (3)C10—C9—C11—C12170.0 (3)
C9—N1—C8—O2−0.3 (5)
D—H···AD—HH···AD···AD—H···A
O3—H3···O2i0.822.002.806 (4)170
N1—H1N1···O10.861.962.656 (4)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O2i0.822.002.806 (4)170
N1—H1N1⋯O10.861.962.656 (4)137

Symmetry code: (i) .

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