Literature DB >> 21202556

3,5-Dihydr-oxy-2-methyl-4H-pyran-4-one.

Cheng-Ming Dong, Shou-Cheng Pu, Wen-Yuan Gao.   

Abstract

In the title compound, C(6)H(6)O(4), inter- and intra-molecular hydrogen bonds are observed which help to establish the crystal structure. There are weak π-π interactions between pyran rings separated by 3.5692 (9) Å.

Entities:  

Year:  2008        PMID: 21202556      PMCID: PMC2961595          DOI: 10.1107/S1600536808010957

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Shinoda et al. (2004 ▶). For related structures, see: Yao et al. (2005 ▶); Gibbons et al. (2000 ▶).

Experimental

Crystal data

C6H6O4 M = 142.11 Monoclinic, a = 6.9400 (14) Å b = 6.0648 (12) Å c = 14.008 (3) Å β = 92.77 (3)° V = 588.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.14 mm−1 T = 113 (2) K 0.14 × 0.12 × 0.10 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.981, T max = 0.986 3970 measured reflections 1381 independent reflections 1166 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.096 S = 1.10 1381 reflections 115 parameters All H-ataom parameters refined Δρmax = 0.37 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808010957/pv2074sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808010957/pv2074Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6O4F000 = 296
Mr = 142.11Dx = 1.603 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1620 reflections
a = 6.9400 (14) Åθ = 1.5–27.9º
b = 6.0648 (12) ŵ = 0.14 mm1
c = 14.008 (3) ÅT = 113 (2) K
β = 92.77 (3)ºBlock, colorless
V = 588.9 (2) Å30.14 × 0.12 × 0.10 mm
Z = 4
Rigaku Saturn diffractometer1381 independent reflections
Radiation source: rotating anode1166 reflections with I > 2σ(I)
Monochromator: confocalRint = 0.025
T = 113(2) Kθmax = 27.9º
ω scansθmin = 2.9º
Absorption correction: multi-scan(CrystalClear; Rigaku/MSC, 2005)h = −9→9
Tmin = 0.981, Tmax = 0.986k = −7→7
3970 measured reflectionsl = −10→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032All H-atom parameters refined
wR(F2) = 0.096  w = 1/[σ2(Fo2) + (0.0654P)2] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max < 0.001
1381 reflectionsΔρmax = 0.37 e Å3
115 parametersΔρmin = −0.24 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O30.27997 (10)1.01120 (11)0.27250 (5)0.0149 (2)
O10.76427 (10)1.05517 (12)0.44524 (5)0.0157 (2)
O40.56909 (12)0.69576 (12)0.26153 (5)0.0171 (2)
O20.32648 (11)1.36372 (12)0.40092 (5)0.0173 (2)
C40.43152 (15)1.02588 (15)0.32615 (7)0.0124 (2)
C50.46324 (15)1.20540 (16)0.39217 (7)0.0132 (2)
C30.58183 (15)0.86536 (16)0.32479 (7)0.0127 (2)
C20.74196 (15)0.88197 (16)0.38483 (7)0.0139 (2)
C60.62774 (16)1.21333 (17)0.44749 (7)0.0157 (2)
C10.90601 (15)0.72547 (19)0.39113 (8)0.0174 (3)
H40.656 (2)1.323 (2)0.4929 (10)0.021 (3)*
H30.871 (2)0.582 (2)0.3585 (10)0.028 (3)*
H11.017 (2)0.782 (2)0.3616 (11)0.037 (4)*
H20.940 (2)0.689 (2)0.4591 (10)0.025 (3)*
H50.271 (3)1.393 (3)0.3397 (14)0.054 (5)*
H60.454 (3)0.669 (2)0.2453 (11)0.037 (4)*
U11U22U33U12U13U23
O30.0141 (4)0.0150 (4)0.0153 (4)0.0004 (3)−0.0022 (3)−0.0013 (3)
O10.0155 (4)0.0165 (4)0.0148 (4)−0.0005 (3)−0.0020 (3)−0.0020 (3)
O40.0136 (4)0.0163 (4)0.0211 (4)0.0004 (3)−0.0008 (3)−0.0080 (3)
O20.0233 (4)0.0142 (4)0.0142 (4)0.0058 (3)−0.0018 (3)−0.0018 (3)
C40.0142 (5)0.0125 (5)0.0105 (4)−0.0022 (4)0.0016 (4)0.0017 (3)
C50.0177 (5)0.0106 (5)0.0116 (4)0.0007 (4)0.0021 (4)0.0008 (3)
C30.0138 (5)0.0118 (5)0.0128 (5)−0.0019 (4)0.0023 (4)−0.0011 (3)
C20.0145 (5)0.0141 (5)0.0132 (4)−0.0017 (4)0.0024 (4)−0.0003 (3)
C60.0200 (6)0.0133 (5)0.0139 (5)−0.0012 (4)0.0006 (4)−0.0020 (4)
C10.0126 (5)0.0200 (6)0.0195 (5)0.0013 (4)0.0001 (4)−0.0010 (4)
O3—C41.2659 (13)C4—C51.4386 (13)
O1—C61.3497 (13)C5—C61.3494 (16)
O1—C21.3531 (12)C3—C21.3646 (15)
O4—C31.3577 (12)C2—C11.4816 (15)
O4—H60.838 (18)C6—H40.936 (14)
O2—C51.3598 (12)C1—H31.005 (15)
O2—H50.94 (2)C1—H10.956 (17)
C4—C31.4276 (14)C1—H20.996 (15)
C6—O1—C2120.47 (8)O1—C2—C3120.53 (9)
C3—O4—H6110.7 (11)O1—C2—C1113.31 (9)
C5—O2—H5107.9 (12)C3—C2—C1126.15 (9)
O3—C4—C3122.06 (9)C5—C6—O1122.45 (9)
O3—C4—C5122.13 (9)C5—C6—H4124.0 (8)
C3—C4—C5115.82 (9)O1—C6—H4113.5 (8)
C6—C5—O2119.86 (9)C2—C1—H3111.1 (8)
C6—C5—C4119.68 (10)C2—C1—H1112.2 (9)
O2—C5—C4120.44 (9)H3—C1—H1107.1 (13)
O4—C3—C2118.92 (9)C2—C1—H2110.3 (8)
O4—C3—C4120.04 (9)H3—C1—H2106.4 (12)
C2—C3—C4121.01 (9)H1—C1—H2109.5 (13)
O3—C4—C5—C6−179.79 (9)C6—O1—C2—C1179.47 (9)
C3—C4—C5—C60.12 (14)O4—C3—C2—O1176.47 (9)
O3—C4—C5—O21.94 (15)C4—C3—C2—O1−1.93 (15)
C3—C4—C5—O2−178.15 (8)O4—C3—C2—C1−2.39 (16)
O3—C4—C3—O43.12 (15)C4—C3—C2—C1179.21 (9)
C5—C4—C3—O4−176.78 (8)O2—C5—C6—O1176.71 (9)
O3—C4—C3—C2−178.50 (9)C4—C5—C6—O1−1.58 (15)
C5—C4—C3—C21.59 (14)C2—O1—C6—C51.32 (15)
C6—O1—C2—C30.47 (15)
D—H···AD—HH···AD···AD—H···A
O4—H6···O3i0.838 (18)1.89 (2)2.6902 (12)159.6 (13)
O2—H5···O3ii0.94 (2)1.75 (2)2.6596 (12)162.6 (17)
O4—H6···O30.838 (18)2.44 (2)2.7820 (12)105.4 (10)
C1—H3···O41.005 (15)2.537 (14)2.8957 (15)100.5 (9)
C6—H4···O2iii0.936 (14)2.412 (13)3.3354 (14)169.4 (12)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H6⋯O3i0.838 (18)1.89 (2)2.6902 (12)159.6 (13)
O2—H5⋯O3ii0.94 (2)1.75 (2)2.6596 (12)162.6 (17)
O4—H6⋯O30.838 (18)2.44 (2)2.7820 (12)105.4 (10)
C1—H3⋯O41.005 (15)2.537 (14)2.8957 (15)100.5 (9)
C6—H4⋯O2iii0.936 (14)2.412 (13)3.3354 (14)169.4 (12)

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  NMR spectroscopy, X-ray crystallographic, and molecular modeling studies on a new pyranone from Haloxylon salicornicum.

Authors:  S Gibbons; B J Denny; S Ali-Amine; K T Mathew; B W Skelton; A H White; A I Gray
Journal:  J Nat Prod       Date:  2000-06       Impact factor: 4.050

3.  Browning and decomposed products of model orange juice.

Authors:  Yuki Shinoda; Masatsune Murata; Seiichi Homma; Hajime Komura
Journal:  Biosci Biotechnol Biochem       Date:  2004-03       Impact factor: 2.043

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.