| Literature DB >> 21202553 |
Grant A Boyle, Thavendran Govender, Hendrik G Kruger, Oluseye K Onajole.
Abstract
The title adamantane derivative, C(19)H(25)NO(2), was synthesized as part of a study into potential anti-tuberculosis agents. The adamantane skeleton displays shorter than normal C-C bond lengths ranging between 1.5230 (15) and 1.5329 (16) Å. The structure displays O-H⋯O hydrogen bonding and an inter-digitated layered packing structure with distinct hydro-philic and hydro-phobic regions.Entities:
Year: 2008 PMID: 21202553 PMCID: PMC2961498 DOI: 10.1107/S1600536808013469
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H25NO2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5317 reflections |
| θ = 2.3–28.2º | |
| µ = 0.08 mm−1 | |
| β = 107.9030 (10)º | Block, colourless |
| 0.44 × 0.33 × 0.16 mm | |
| Bruker SMART CCD area-detector diffractometer | 2861 reflections with |
| Radiation source: fine-focus sealed tube | |
| Monochromator: graphite | θmax = 28.0º |
| θmin = 1.9º | |
| φ and ω scans | |
| Absorption correction: none | |
| 19272 measured reflections | |
| 3684 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.001 | |
| 3684 reflections | Δρmax = 0.29 e Å−3 |
| 200 parameters | Δρmin = −0.22 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.26872 (10) | 0.12522 (7) | 0.22178 (13) | 0.0191 (2) | |
| H1 | 0.2797 | 0.1396 | 0.3369 | 0.023* | |
| C2 | 0.32356 (10) | 0.03827 (6) | 0.21268 (13) | 0.0170 (2) | |
| H2 | 0.4145 | 0.0414 | 0.2656 | 0.020* | |
| C3 | 0.30029 (10) | 0.01726 (7) | 0.03325 (13) | 0.0179 (2) | |
| H3 | 0.3322 | −0.0398 | 0.0239 | 0.021* | |
| C4 | 0.16309 (10) | 0.02106 (7) | −0.06201 (14) | 0.0215 (3) | |
| H4A | 0.1512 | 0.0068 | −0.1762 | 0.026* | |
| H4B | 0.1172 | −0.0198 | −0.0177 | 0.026* | |
| C5 | 0.11394 (11) | 0.10846 (7) | −0.05095 (14) | 0.0226 (3) | |
| H5 | 0.0244 | 0.1109 | −0.1128 | 0.027* | |
| C6 | 0.18444 (11) | 0.17132 (7) | −0.12046 (14) | 0.0250 (3) | |
| H6A | 0.1522 | 0.2279 | −0.1143 | 0.030* | |
| H6B | 0.1728 | 0.1583 | −0.2352 | 0.030* | |
| C7 | 0.32164 (11) | 0.16808 (7) | −0.02533 (14) | 0.0220 (3) | |
| H7 | 0.3678 | 0.2092 | −0.0707 | 0.026* | |
| C8 | 0.33836 (11) | 0.18828 (7) | 0.15074 (14) | 0.0212 (3) | |
| H8A | 0.3071 | 0.2449 | 0.1592 | 0.025* | |
| H8B | 0.4269 | 0.1869 | 0.2126 | 0.025* | |
| C9 | 0.13223 (11) | 0.12772 (7) | 0.12635 (14) | 0.0225 (3) | |
| H9A | 0.0986 | 0.1835 | 0.1362 | 0.027* | |
| H9B | 0.0872 | 0.0864 | 0.1709 | 0.027* | |
| C10 | 0.36964 (10) | 0.08045 (7) | −0.03724 (13) | 0.0210 (3) | |
| H10A | 0.4586 | 0.0778 | 0.0223 | 0.025* | |
| H10B | 0.3586 | 0.0668 | −0.1515 | 0.025* | |
| C11 | 0.27216 (11) | −0.11302 (7) | 0.24168 (14) | 0.0206 (3) | |
| H11A | 0.2282 | −0.1153 | 0.1246 | 0.025* | |
| H11B | 0.2266 | −0.1482 | 0.2972 | 0.025* | |
| C12 | 0.40094 (11) | −0.14766 (7) | 0.27306 (14) | 0.0242 (3) | |
| H12A | 0.3964 | −0.2032 | 0.2226 | 0.029* | |
| H12B | 0.4490 | −0.1107 | 0.2243 | 0.029* | |
| C13 | 0.29089 (10) | −0.01541 (7) | 0.45859 (13) | 0.0206 (3) | |
| C14 | 0.22837 (11) | −0.07451 (7) | 0.54113 (13) | 0.0206 (2) | |
| C15 | 0.10237 (11) | −0.08725 (8) | 0.48552 (15) | 0.0264 (3) | |
| H15 | 0.0542 | −0.0607 | 0.3896 | 0.032* | |
| C16 | 0.04662 (12) | −0.13882 (9) | 0.56983 (16) | 0.0316 (3) | |
| H16 | −0.0399 | −0.1468 | 0.5324 | 0.038* | |
| C17 | 0.11626 (12) | −0.17845 (8) | 0.70758 (15) | 0.0299 (3) | |
| H17 | 0.0780 | −0.2149 | 0.7635 | 0.036* | |
| C18 | 0.24153 (12) | −0.16534 (7) | 0.76451 (15) | 0.0270 (3) | |
| H18 | 0.2895 | −0.1923 | 0.8601 | 0.032* | |
| C19 | 0.29721 (11) | −0.11306 (7) | 0.68239 (14) | 0.0231 (3) | |
| H19 | 0.3833 | −0.1034 | 0.7229 | 0.028* | |
| N1 | 0.27326 (8) | −0.02630 (5) | 0.29804 (11) | 0.0183 (2) | |
| O1 | 0.46035 (8) | −0.15413 (6) | 0.44118 (10) | 0.0311 (2) | |
| H1A | 0.5219 | −0.1226 | 0.4676 | 0.047* | |
| O2 | 0.34988 (8) | 0.04282 (5) | 0.53714 (10) | 0.0301 (2) |
| C1 | 0.0225 (6) | 0.0194 (5) | 0.0167 (5) | −0.0003 (4) | 0.0081 (5) | −0.0023 (4) |
| C2 | 0.0180 (5) | 0.0183 (5) | 0.0157 (5) | −0.0021 (4) | 0.0064 (4) | 0.0004 (4) |
| C3 | 0.0201 (6) | 0.0183 (5) | 0.0166 (5) | −0.0001 (4) | 0.0075 (4) | −0.0018 (4) |
| C4 | 0.0212 (6) | 0.0250 (6) | 0.0177 (6) | −0.0035 (5) | 0.0052 (5) | −0.0039 (4) |
| C5 | 0.0161 (6) | 0.0281 (6) | 0.0217 (6) | 0.0016 (5) | 0.0030 (5) | −0.0006 (5) |
| C6 | 0.0282 (7) | 0.0261 (6) | 0.0199 (6) | 0.0028 (5) | 0.0060 (5) | 0.0034 (5) |
| C7 | 0.0244 (6) | 0.0218 (6) | 0.0214 (6) | −0.0014 (5) | 0.0094 (5) | 0.0032 (5) |
| C8 | 0.0235 (6) | 0.0186 (5) | 0.0218 (6) | −0.0019 (5) | 0.0071 (5) | −0.0007 (4) |
| C9 | 0.0208 (6) | 0.0240 (6) | 0.0248 (6) | 0.0013 (5) | 0.0102 (5) | −0.0015 (5) |
| C10 | 0.0193 (6) | 0.0269 (6) | 0.0183 (6) | −0.0003 (5) | 0.0082 (5) | 0.0000 (5) |
| C11 | 0.0237 (6) | 0.0178 (5) | 0.0220 (6) | −0.0031 (4) | 0.0094 (5) | −0.0016 (4) |
| C12 | 0.0251 (6) | 0.0211 (6) | 0.0282 (7) | 0.0004 (5) | 0.0109 (5) | 0.0004 (5) |
| C13 | 0.0208 (6) | 0.0225 (6) | 0.0182 (6) | −0.0011 (5) | 0.0054 (5) | 0.0010 (4) |
| C14 | 0.0248 (6) | 0.0206 (6) | 0.0183 (5) | −0.0017 (5) | 0.0097 (5) | −0.0022 (4) |
| C15 | 0.0242 (6) | 0.0327 (7) | 0.0222 (6) | −0.0018 (5) | 0.0070 (5) | 0.0008 (5) |
| C16 | 0.0248 (7) | 0.0387 (7) | 0.0349 (7) | −0.0082 (5) | 0.0142 (6) | −0.0039 (6) |
| C17 | 0.0386 (8) | 0.0254 (6) | 0.0340 (7) | −0.0043 (6) | 0.0233 (6) | 0.0009 (5) |
| C18 | 0.0368 (7) | 0.0234 (6) | 0.0246 (6) | 0.0045 (5) | 0.0150 (6) | 0.0028 (5) |
| C19 | 0.0226 (6) | 0.0248 (6) | 0.0233 (6) | 0.0002 (5) | 0.0091 (5) | 0.0002 (5) |
| N1 | 0.0212 (5) | 0.0171 (5) | 0.0178 (5) | −0.0024 (4) | 0.0078 (4) | −0.0006 (4) |
| O1 | 0.0250 (5) | 0.0372 (5) | 0.0302 (5) | 0.0001 (4) | 0.0070 (4) | 0.0092 (4) |
| O2 | 0.0386 (5) | 0.0317 (5) | 0.0189 (4) | −0.0140 (4) | 0.0072 (4) | −0.0028 (4) |
| C1—C9 | 1.5258 (15) | C9—H9B | 0.9900 |
| C1—C8 | 1.5329 (16) | C10—H10A | 0.9900 |
| C1—C2 | 1.5450 (15) | C10—H10B | 0.9900 |
| C1—H1 | 1.0000 | C11—N1 | 1.4783 (14) |
| C2—N1 | 1.4922 (14) | C11—C12 | 1.5174 (16) |
| C2—C3 | 1.5420 (15) | C11—H11A | 0.9900 |
| C2—H2 | 1.0000 | C11—H11B | 0.9900 |
| C3—C10 | 1.5293 (15) | C12—O1 | 1.4175 (14) |
| C3—C4 | 1.5330 (15) | C12—H12A | 0.9900 |
| C3—H3 | 1.0000 | C12—H12B | 0.9900 |
| C4—C5 | 1.5283 (16) | C13—O2 | 1.2319 (13) |
| C4—H4A | 0.9900 | C13—N1 | 1.3632 (14) |
| C4—H4B | 0.9900 | C13—C14 | 1.4996 (16) |
| C5—C9 | 1.5270 (16) | C14—C15 | 1.3858 (16) |
| C5—C6 | 1.5295 (17) | C14—C19 | 1.3876 (16) |
| C5—H5 | 1.0000 | C15—C16 | 1.3867 (18) |
| C6—C7 | 1.5325 (16) | C15—H15 | 0.9500 |
| C6—H6A | 0.9900 | C16—C17 | 1.3766 (19) |
| C6—H6B | 0.9900 | C16—H16 | 0.9500 |
| C7—C8 | 1.5230 (15) | C17—C18 | 1.3793 (18) |
| C7—C10 | 1.5280 (16) | C17—H17 | 0.9500 |
| C7—H7 | 1.0000 | C18—C19 | 1.3804 (16) |
| C8—H8A | 0.9900 | C18—H18 | 0.9500 |
| C8—H8B | 0.9900 | C19—H19 | 0.9500 |
| C9—H9A | 0.9900 | O1—H1A | 0.8400 |
| C9—C1—C8 | 109.43 (9) | C1—C9—H9A | 109.6 |
| C9—C1—C2 | 111.00 (9) | C5—C9—H9A | 109.6 |
| C8—C1—C2 | 108.03 (9) | C1—C9—H9B | 109.6 |
| C9—C1—H1 | 109.5 | C5—C9—H9B | 109.6 |
| C8—C1—H1 | 109.5 | H9A—C9—H9B | 108.1 |
| C2—C1—H1 | 109.5 | C7—C10—C3 | 110.19 (9) |
| N1—C2—C3 | 112.39 (9) | C7—C10—H10A | 109.6 |
| N1—C2—C1 | 112.35 (9) | C3—C10—H10A | 109.6 |
| C3—C2—C1 | 107.73 (9) | C7—C10—H10B | 109.6 |
| N1—C2—H2 | 108.1 | C3—C10—H10B | 109.6 |
| C3—C2—H2 | 108.1 | H10A—C10—H10B | 108.1 |
| C1—C2—H2 | 108.1 | N1—C11—C12 | 112.21 (9) |
| C10—C3—C4 | 108.99 (9) | N1—C11—H11A | 109.2 |
| C10—C3—C2 | 108.25 (9) | C12—C11—H11A | 109.2 |
| C4—C3—C2 | 111.70 (9) | N1—C11—H11B | 109.2 |
| C10—C3—H3 | 109.3 | C12—C11—H11B | 109.2 |
| C4—C3—H3 | 109.3 | H11A—C11—H11B | 107.9 |
| C2—C3—H3 | 109.3 | O1—C12—C11 | 110.06 (10) |
| C5—C4—C3 | 109.69 (9) | O1—C12—H12A | 109.6 |
| C5—C4—H4A | 109.7 | C11—C12—H12A | 109.6 |
| C3—C4—H4A | 109.7 | O1—C12—H12B | 109.6 |
| C5—C4—H4B | 109.7 | C11—C12—H12B | 109.6 |
| C3—C4—H4B | 109.7 | H12A—C12—H12B | 108.2 |
| H4A—C4—H4B | 108.2 | O2—C13—N1 | 123.49 (10) |
| C9—C5—C4 | 108.18 (9) | O2—C13—C14 | 118.37 (10) |
| C9—C5—C6 | 110.02 (10) | N1—C13—C14 | 118.02 (10) |
| C4—C5—C6 | 109.57 (10) | C15—C14—C19 | 119.26 (11) |
| C9—C5—H5 | 109.7 | C15—C14—C13 | 121.52 (10) |
| C4—C5—H5 | 109.7 | C19—C14—C13 | 119.08 (10) |
| C6—C5—H5 | 109.7 | C14—C15—C16 | 120.01 (12) |
| C5—C6—C7 | 109.79 (9) | C14—C15—H15 | 120.0 |
| C5—C6—H6A | 109.7 | C16—C15—H15 | 120.0 |
| C7—C6—H6A | 109.7 | C17—C16—C15 | 120.22 (12) |
| C5—C6—H6B | 109.7 | C17—C16—H16 | 119.9 |
| C7—C6—H6B | 109.7 | C15—C16—H16 | 119.9 |
| H6A—C6—H6B | 108.2 | C16—C17—C18 | 120.05 (12) |
| C8—C7—C10 | 109.21 (9) | C16—C17—H17 | 120.0 |
| C8—C7—C6 | 109.21 (10) | C18—C17—H17 | 120.0 |
| C10—C7—C6 | 108.86 (9) | C17—C18—C19 | 119.94 (12) |
| C8—C7—H7 | 109.8 | C17—C18—H18 | 120.0 |
| C10—C7—H7 | 109.8 | C19—C18—H18 | 120.0 |
| C6—C7—H7 | 109.8 | C18—C19—C14 | 120.48 (11) |
| C7—C8—C1 | 110.27 (9) | C18—C19—H19 | 119.8 |
| C7—C8—H8A | 109.6 | C14—C19—H19 | 119.8 |
| C1—C8—H8A | 109.6 | C13—N1—C11 | 116.51 (9) |
| C7—C8—H8B | 109.6 | C13—N1—C2 | 117.71 (9) |
| C1—C8—H8B | 109.6 | C11—N1—C2 | 117.16 (9) |
| H8A—C8—H8B | 108.1 | C12—O1—H1A | 109.5 |
| C1—C9—C5 | 110.23 (9) | ||
| C9—C1—C2—N1 | −67.42 (12) | C4—C3—C10—C7 | 60.22 (11) |
| C8—C1—C2—N1 | 172.61 (9) | C2—C3—C10—C7 | −61.46 (11) |
| C9—C1—C2—C3 | 56.91 (12) | N1—C11—C12—O1 | 65.78 (12) |
| C8—C1—C2—C3 | −63.06 (11) | O2—C13—C14—C15 | 121.39 (13) |
| N1—C2—C3—C10 | −172.53 (9) | N1—C13—C14—C15 | −54.82 (15) |
| C1—C2—C3—C10 | 63.16 (11) | O2—C13—C14—C19 | −54.31 (15) |
| N1—C2—C3—C4 | 67.48 (11) | N1—C13—C14—C19 | 129.49 (11) |
| C1—C2—C3—C4 | −56.83 (11) | C19—C14—C15—C16 | −0.74 (18) |
| C10—C3—C4—C5 | −59.62 (12) | C13—C14—C15—C16 | −176.43 (11) |
| C2—C3—C4—C5 | 59.94 (12) | C14—C15—C16—C17 | −0.94 (19) |
| C3—C4—C5—C9 | −60.20 (12) | C15—C16—C17—C18 | 1.6 (2) |
| C3—C4—C5—C6 | 59.75 (12) | C16—C17—C18—C19 | −0.61 (19) |
| C9—C5—C6—C7 | 58.95 (12) | C17—C18—C19—C14 | −1.08 (18) |
| C4—C5—C6—C7 | −59.87 (12) | C15—C14—C19—C18 | 1.75 (17) |
| C5—C6—C7—C8 | −59.44 (12) | C13—C14—C19—C18 | 177.55 (11) |
| C5—C6—C7—C10 | 59.72 (12) | O2—C13—N1—C11 | 144.02 (12) |
| C10—C7—C8—C1 | −59.05 (12) | C14—C13—N1—C11 | −39.99 (14) |
| C6—C7—C8—C1 | 59.90 (12) | O2—C13—N1—C2 | −2.93 (16) |
| C9—C1—C8—C7 | −59.43 (12) | C14—C13—N1—C2 | 173.06 (9) |
| C2—C1—C8—C7 | 61.54 (11) | C12—C11—N1—C13 | −80.57 (12) |
| C8—C1—C9—C5 | 58.41 (12) | C12—C11—N1—C2 | 66.57 (12) |
| C2—C1—C9—C5 | −60.73 (12) | C3—C2—N1—C13 | 178.49 (9) |
| C4—C5—C9—C1 | 61.06 (12) | C1—C2—N1—C13 | −59.80 (13) |
| C6—C5—C9—C1 | −58.61 (12) | C3—C2—N1—C11 | 31.75 (13) |
| C8—C7—C10—C3 | 58.96 (12) | C1—C2—N1—C11 | 153.46 (9) |
| C6—C7—C10—C3 | −60.20 (12) |
| H··· | ||||
| O1—H1A···O2i | 0.84 | 1.96 | 2.7735 (12) | 164 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.84 | 1.96 | 2.7735 (12) | 164 |
Symmetry code: (i) .