| Literature DB >> 21202542 |
Wei Dai1, Wen-Xiang Wang, Yu-Yuan Zhao, Hong Zhao.
Abstract
The mol-ecule of the title compound, C(14)H(9)N(3), is essentially planar, the dihedral angle formed by the benzimidazole ring system with the benzene ring being 3.87 (3)°. In the crystal packing, mol-ecules are linked into zigzag chains running parallel to the b axis by inter-molecular N-H⋯N hydrogen-bond inter-actions.Entities:
Year: 2008 PMID: 21202542 PMCID: PMC2961444 DOI: 10.1107/S1600536808012932
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H9N3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 2461 reflections |
| θ = 3.2–27.5º | |
| µ = 0.08 mm−1 | |
| β = 92.057 (7)º | Prism, colourless |
| 0.35 × 0.15 × 0.10 mm | |
| Rigaku Mercury2 (2x2 bin mode) diffractometer | 2581 independent reflections |
| Radiation source: fine-focus sealed tube | 2073 reflections with |
| Monochromator: graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.9º |
| θmin = 2.4º | |
| CCD_Profile_fitting scans | |
| Absorption correction: multi-scan(CrystalClear; Rigaku, 2005) | |
| 11203 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| | |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.16 e Å−3 | |
| 2581 reflections | Δρmin = −0.17 e Å−3 |
| 159 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.115 (7) |
| Secondary atom site location: difference Fourier map |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N2 | 0.23276 (15) | 0.98417 (9) | −0.07818 (9) | 0.0381 (3) | |
| C8 | 0.14908 (17) | 0.84634 (11) | 0.06171 (10) | 0.0367 (3) | |
| N1 | 0.08189 (15) | 0.82641 (9) | −0.12784 (8) | 0.0404 (3) | |
| C7 | 0.15245 (17) | 0.88501 (10) | −0.04772 (10) | 0.0360 (3) | |
| N3 | 0.11261 (18) | 0.68424 (11) | 0.45407 (10) | 0.0543 (3) | |
| C11 | 0.13598 (18) | 0.76582 (11) | 0.26664 (10) | 0.0389 (3) | |
| C6 | 0.21340 (17) | 0.98948 (10) | −0.18604 (10) | 0.0363 (3) | |
| C9 | 0.23427 (19) | 0.90578 (12) | 0.14485 (10) | 0.0439 (3) | |
| H9A | 0.2963 | 0.9730 | 0.1315 | 0.053* | |
| C1 | 0.11833 (17) | 0.89042 (11) | −0.21590 (10) | 0.0377 (3) | |
| C5 | 0.2689 (2) | 1.06900 (11) | −0.25904 (11) | 0.0443 (3) | |
| H5A | 0.3300 | 1.1351 | −0.2384 | 0.053* | |
| C14 | 0.12508 (18) | 0.72221 (12) | 0.37201 (11) | 0.0425 (3) | |
| C13 | 0.05688 (19) | 0.74595 (12) | 0.08336 (11) | 0.0432 (3) | |
| H13A | −0.0015 | 0.7058 | 0.0287 | 0.052* | |
| C12 | 0.05122 (19) | 0.70550 (12) | 0.18459 (11) | 0.0436 (3) | |
| H12A | −0.0093 | 0.6378 | 0.1980 | 0.052* | |
| C10 | 0.2277 (2) | 0.86617 (12) | 0.24669 (11) | 0.0459 (3) | |
| H10A | 0.2846 | 0.9066 | 0.3017 | 0.055* | |
| C4 | 0.2292 (2) | 1.04531 (13) | −0.36315 (11) | 0.0496 (4) | |
| H4A | 0.2652 | 1.0964 | −0.4142 | 0.060* | |
| C3 | 0.1362 (2) | 0.94670 (13) | −0.39450 (11) | 0.0492 (4) | |
| H3A | 0.1134 | 0.9332 | −0.4658 | 0.059* | |
| C2 | 0.07759 (19) | 0.86882 (12) | −0.32224 (10) | 0.0451 (3) | |
| H2B | 0.0131 | 0.8041 | −0.3435 | 0.054* | |
| H2A | 0.281 (2) | 1.0377 (15) | −0.0336 (13) | 0.058 (5)* |
| N2 | 0.0439 (6) | 0.0349 (6) | 0.0354 (6) | 0.0001 (4) | 0.0010 (5) | −0.0012 (4) |
| C8 | 0.0358 (6) | 0.0391 (7) | 0.0352 (7) | 0.0032 (5) | 0.0033 (5) | 0.0003 (5) |
| N1 | 0.0455 (6) | 0.0407 (6) | 0.0349 (6) | −0.0031 (5) | −0.0001 (4) | 0.0003 (4) |
| C7 | 0.0377 (6) | 0.0355 (6) | 0.0350 (7) | 0.0035 (5) | 0.0025 (5) | 0.0001 (5) |
| N3 | 0.0641 (8) | 0.0563 (8) | 0.0425 (7) | −0.0005 (6) | 0.0002 (6) | 0.0094 (6) |
| C11 | 0.0391 (7) | 0.0420 (7) | 0.0357 (7) | 0.0050 (5) | 0.0029 (5) | 0.0042 (5) |
| C6 | 0.0382 (6) | 0.0351 (7) | 0.0357 (7) | 0.0050 (5) | 0.0020 (5) | 0.0003 (5) |
| C9 | 0.0535 (8) | 0.0389 (7) | 0.0393 (8) | −0.0058 (6) | −0.0006 (6) | 0.0025 (5) |
| C1 | 0.0394 (6) | 0.0375 (7) | 0.0360 (7) | 0.0042 (5) | −0.0002 (5) | 0.0023 (5) |
| C5 | 0.0502 (8) | 0.0360 (7) | 0.0468 (8) | 0.0010 (6) | 0.0028 (6) | 0.0046 (6) |
| C14 | 0.0468 (8) | 0.0425 (7) | 0.0381 (7) | 0.0035 (5) | 0.0011 (6) | 0.0026 (5) |
| C13 | 0.0463 (7) | 0.0464 (8) | 0.0369 (7) | −0.0059 (6) | 0.0000 (5) | −0.0026 (6) |
| C12 | 0.0461 (7) | 0.0434 (7) | 0.0414 (7) | −0.0061 (6) | 0.0034 (6) | 0.0025 (6) |
| C10 | 0.0549 (8) | 0.0448 (8) | 0.0376 (7) | −0.0049 (6) | −0.0038 (6) | −0.0009 (6) |
| C4 | 0.0590 (9) | 0.0472 (8) | 0.0430 (8) | 0.0079 (6) | 0.0050 (6) | 0.0122 (6) |
| C3 | 0.0611 (9) | 0.0508 (8) | 0.0354 (7) | 0.0113 (7) | −0.0042 (6) | 0.0050 (6) |
| C2 | 0.0519 (8) | 0.0439 (7) | 0.0390 (7) | 0.0023 (6) | −0.0058 (6) | −0.0016 (6) |
| N2—C7 | 1.3696 (16) | C9—C10 | 1.3798 (19) |
| N2—C6 | 1.3754 (17) | C9—H9A | 0.9300 |
| N2—H2A | 0.910 (17) | C1—C2 | 1.3972 (18) |
| C8—C13 | 1.3926 (19) | C5—C4 | 1.374 (2) |
| C8—C9 | 1.3940 (19) | C5—H5A | 0.9300 |
| C8—C7 | 1.4661 (17) | C13—C12 | 1.3756 (18) |
| N1—C7 | 1.3191 (16) | C13—H13A | 0.9300 |
| N1—C1 | 1.3846 (16) | C12—H12A | 0.9300 |
| N3—C14 | 1.1427 (17) | C10—H10A | 0.9300 |
| C11—C10 | 1.3861 (19) | C4—C3 | 1.396 (2) |
| C11—C12 | 1.3877 (19) | C4—H4A | 0.9300 |
| C11—C14 | 1.4407 (18) | C3—C2 | 1.378 (2) |
| C6—C5 | 1.3901 (18) | C3—H3A | 0.9300 |
| C6—C1 | 1.4025 (18) | C2—H2B | 0.9300 |
| C7—N2—C6 | 107.00 (11) | C4—C5—C6 | 116.80 (13) |
| C7—N2—H2A | 125.0 (10) | C4—C5—H5A | 121.6 |
| C6—N2—H2A | 127.8 (10) | C6—C5—H5A | 121.6 |
| C13—C8—C9 | 118.70 (12) | N3—C14—C11 | 177.40 (16) |
| C13—C8—C7 | 118.53 (12) | C12—C13—C8 | 120.77 (13) |
| C9—C8—C7 | 122.77 (12) | C12—C13—H13A | 119.6 |
| C7—N1—C1 | 105.01 (11) | C8—C13—H13A | 119.6 |
| N1—C7—N2 | 112.72 (11) | C13—C12—C11 | 119.89 (13) |
| N1—C7—C8 | 123.42 (12) | C13—C12—H12A | 120.1 |
| N2—C7—C8 | 123.84 (11) | C11—C12—H12A | 120.1 |
| C10—C11—C12 | 120.16 (12) | C11—C10—C9 | 119.67 (13) |
| C10—C11—C14 | 121.25 (12) | C11—C10—H10A | 120.2 |
| C12—C11—C14 | 118.59 (12) | C9—C10—H10A | 120.2 |
| N2—C6—C5 | 132.50 (12) | C5—C4—C3 | 121.81 (13) |
| N2—C6—C1 | 105.27 (11) | C5—C4—H4A | 119.1 |
| C5—C6—C1 | 122.23 (12) | C3—C4—H4A | 119.1 |
| C10—C9—C8 | 120.80 (13) | C2—C3—C4 | 121.54 (14) |
| C10—C9—H9A | 119.6 | C2—C3—H3A | 119.2 |
| C8—C9—H9A | 119.6 | C4—C3—H3A | 119.2 |
| N1—C1—C2 | 130.07 (12) | C3—C2—C1 | 117.69 (13) |
| N1—C1—C6 | 110.01 (11) | C3—C2—H2B | 121.2 |
| C2—C1—C6 | 119.91 (12) | C1—C2—H2B | 121.2 |
| H··· | ||||
| C13—H13A···N1 | 0.93 | 2.54 | 2.861 (2) | 101 |
| N2—H2A···N3i | 0.910 (17) | 2.14 (2) | 3.033 (2) | 169.1 (15) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C13—H13 | 0.93 | 2.54 | 2.861 (2) | 101 |
| N2—H2 | 0.910 (17) | 2.14 (2) | 3.033 (2) | 169.1 (15) |
Symmetry code: (i) .