Literature DB >> 21202542

4-(1H-Benzimidazol-2-yl)benzonitrile.

Wei Dai1, Wen-Xiang Wang, Yu-Yuan Zhao, Hong Zhao.   

Abstract

The mol-ecule of the title compound, C(14)H(9)N(3), is essentially planar, the dihedral angle formed by the benzimidazole ring system with the benzene ring being 3.87 (3)°. In the crystal packing, mol-ecules are linked into zigzag chains running parallel to the b axis by inter-molecular N-H⋯N hydrogen-bond inter-actions.

Entities:  

Year:  2008        PMID: 21202542      PMCID: PMC2961444          DOI: 10.1107/S1600536808012932

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Gallagher et al. (2001 ▶); Howarth & Hanlon (2001 ▶); Kazak et al. (2006 ▶); Li et al. (1998 ▶); Íkizler & Sancak (1992 ▶).

Experimental

Crystal data

C14H9N3 M = 219.24 Monoclinic, a = 7.2172 (10) Å b = 11.818 (2) Å c = 12.719 (2) Å β = 92.057 (7)° V = 1084.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 (2) K 0.35 × 0.15 × 0.10 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.910, T max = 1.000 (expected range = 0.903–0.992) 11203 measured reflections 2581 independent reflections 2073 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.118 S = 1.08 2581 reflections 159 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808012932/rz2211sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808012932/rz2211Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H9N3F000 = 456
Mr = 219.24Dx = 1.343 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2461 reflections
a = 7.2172 (10) Åθ = 3.2–27.5º
b = 11.818 (2) ŵ = 0.08 mm1
c = 12.719 (2) ÅT = 293 (2) K
β = 92.057 (7)ºPrism, colourless
V = 1084.1 (3) Å30.35 × 0.15 × 0.10 mm
Z = 4
Rigaku Mercury2 (2x2 bin mode) diffractometer2581 independent reflections
Radiation source: fine-focus sealed tube2073 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.037
Detector resolution: 13.6612 pixels mm-1θmax = 27.9º
T = 293(2) Kθmin = 2.4º
CCD_Profile_fitting scansh = −9→9
Absorption correction: multi-scan(CrystalClear; Rigaku, 2005)k = −15→15
Tmin = 0.911, Tmax = 1.000l = −16→16
11203 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.046  w = 1/[σ2(Fo2) + (0.056P)2 + 0.1336P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.118(Δ/σ)max < 0.001
S = 1.08Δρmax = 0.16 e Å3
2581 reflectionsΔρmin = −0.17 e Å3
159 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.115 (7)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N20.23276 (15)0.98417 (9)−0.07818 (9)0.0381 (3)
C80.14908 (17)0.84634 (11)0.06171 (10)0.0367 (3)
N10.08189 (15)0.82641 (9)−0.12784 (8)0.0404 (3)
C70.15245 (17)0.88501 (10)−0.04772 (10)0.0360 (3)
N30.11261 (18)0.68424 (11)0.45407 (10)0.0543 (3)
C110.13598 (18)0.76582 (11)0.26664 (10)0.0389 (3)
C60.21340 (17)0.98948 (10)−0.18604 (10)0.0363 (3)
C90.23427 (19)0.90578 (12)0.14485 (10)0.0439 (3)
H9A0.29630.97300.13150.053*
C10.11833 (17)0.89042 (11)−0.21590 (10)0.0377 (3)
C50.2689 (2)1.06900 (11)−0.25904 (11)0.0443 (3)
H5A0.33001.1351−0.23840.053*
C140.12508 (18)0.72221 (12)0.37201 (11)0.0425 (3)
C130.05688 (19)0.74595 (12)0.08336 (11)0.0432 (3)
H13A−0.00150.70580.02870.052*
C120.05122 (19)0.70550 (12)0.18459 (11)0.0436 (3)
H12A−0.00930.63780.19800.052*
C100.2277 (2)0.86617 (12)0.24669 (11)0.0459 (3)
H10A0.28460.90660.30170.055*
C40.2292 (2)1.04531 (13)−0.36315 (11)0.0496 (4)
H4A0.26521.0964−0.41420.060*
C30.1362 (2)0.94670 (13)−0.39450 (11)0.0492 (4)
H3A0.11340.9332−0.46580.059*
C20.07759 (19)0.86882 (12)−0.32224 (10)0.0451 (3)
H2B0.01310.8041−0.34350.054*
H2A0.281 (2)1.0377 (15)−0.0336 (13)0.058 (5)*
U11U22U33U12U13U23
N20.0439 (6)0.0349 (6)0.0354 (6)0.0001 (4)0.0010 (5)−0.0012 (4)
C80.0358 (6)0.0391 (7)0.0352 (7)0.0032 (5)0.0033 (5)0.0003 (5)
N10.0455 (6)0.0407 (6)0.0349 (6)−0.0031 (5)−0.0001 (4)0.0003 (4)
C70.0377 (6)0.0355 (6)0.0350 (7)0.0035 (5)0.0025 (5)0.0001 (5)
N30.0641 (8)0.0563 (8)0.0425 (7)−0.0005 (6)0.0002 (6)0.0094 (6)
C110.0391 (7)0.0420 (7)0.0357 (7)0.0050 (5)0.0029 (5)0.0042 (5)
C60.0382 (6)0.0351 (7)0.0357 (7)0.0050 (5)0.0020 (5)0.0003 (5)
C90.0535 (8)0.0389 (7)0.0393 (8)−0.0058 (6)−0.0006 (6)0.0025 (5)
C10.0394 (6)0.0375 (7)0.0360 (7)0.0042 (5)−0.0002 (5)0.0023 (5)
C50.0502 (8)0.0360 (7)0.0468 (8)0.0010 (6)0.0028 (6)0.0046 (6)
C140.0468 (8)0.0425 (7)0.0381 (7)0.0035 (5)0.0011 (6)0.0026 (5)
C130.0463 (7)0.0464 (8)0.0369 (7)−0.0059 (6)0.0000 (5)−0.0026 (6)
C120.0461 (7)0.0434 (7)0.0414 (7)−0.0061 (6)0.0034 (6)0.0025 (6)
C100.0549 (8)0.0448 (8)0.0376 (7)−0.0049 (6)−0.0038 (6)−0.0009 (6)
C40.0590 (9)0.0472 (8)0.0430 (8)0.0079 (6)0.0050 (6)0.0122 (6)
C30.0611 (9)0.0508 (8)0.0354 (7)0.0113 (7)−0.0042 (6)0.0050 (6)
C20.0519 (8)0.0439 (7)0.0390 (7)0.0023 (6)−0.0058 (6)−0.0016 (6)
N2—C71.3696 (16)C9—C101.3798 (19)
N2—C61.3754 (17)C9—H9A0.9300
N2—H2A0.910 (17)C1—C21.3972 (18)
C8—C131.3926 (19)C5—C41.374 (2)
C8—C91.3940 (19)C5—H5A0.9300
C8—C71.4661 (17)C13—C121.3756 (18)
N1—C71.3191 (16)C13—H13A0.9300
N1—C11.3846 (16)C12—H12A0.9300
N3—C141.1427 (17)C10—H10A0.9300
C11—C101.3861 (19)C4—C31.396 (2)
C11—C121.3877 (19)C4—H4A0.9300
C11—C141.4407 (18)C3—C21.378 (2)
C6—C51.3901 (18)C3—H3A0.9300
C6—C11.4025 (18)C2—H2B0.9300
C7—N2—C6107.00 (11)C4—C5—C6116.80 (13)
C7—N2—H2A125.0 (10)C4—C5—H5A121.6
C6—N2—H2A127.8 (10)C6—C5—H5A121.6
C13—C8—C9118.70 (12)N3—C14—C11177.40 (16)
C13—C8—C7118.53 (12)C12—C13—C8120.77 (13)
C9—C8—C7122.77 (12)C12—C13—H13A119.6
C7—N1—C1105.01 (11)C8—C13—H13A119.6
N1—C7—N2112.72 (11)C13—C12—C11119.89 (13)
N1—C7—C8123.42 (12)C13—C12—H12A120.1
N2—C7—C8123.84 (11)C11—C12—H12A120.1
C10—C11—C12120.16 (12)C11—C10—C9119.67 (13)
C10—C11—C14121.25 (12)C11—C10—H10A120.2
C12—C11—C14118.59 (12)C9—C10—H10A120.2
N2—C6—C5132.50 (12)C5—C4—C3121.81 (13)
N2—C6—C1105.27 (11)C5—C4—H4A119.1
C5—C6—C1122.23 (12)C3—C4—H4A119.1
C10—C9—C8120.80 (13)C2—C3—C4121.54 (14)
C10—C9—H9A119.6C2—C3—H3A119.2
C8—C9—H9A119.6C4—C3—H3A119.2
N1—C1—C2130.07 (12)C3—C2—C1117.69 (13)
N1—C1—C6110.01 (11)C3—C2—H2B121.2
C2—C1—C6119.91 (12)C1—C2—H2B121.2
D—H···AD—HH···AD···AD—H···A
C13—H13A···N10.932.542.861 (2)101
N2—H2A···N3i0.910 (17)2.14 (2)3.033 (2)169.1 (15)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13A⋯N10.932.542.861 (2)101
N2—H2A⋯N3i0.910 (17)2.14 (2)3.033 (2)169.1 (15)

Symmetry code: (i) .

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