Literature DB >> 21202530

(2R,3S)-2-Ammonio-3-hydr-oxy-3-(4-nitro-phen-yl)propanoic acid chloride monohydrate.

Vincent Gaumet, Valérie Weber, Valery P Zaitsev, Michel Madesclaire.   

Abstract

The title compound, C(9)H(11)N(2)O(5) (+)·Cl(-)·H(2)O, was synthesized from (1S,2S)-2-amino-1-(4-nitro-phen-yl)propane-1,3-diol in four steps. As demonstrated by this work, no racemization occurs during this synthetic procedure. The crystal structure displays many inter-molecular hydrogen bonds between the acidic cation, chloride anions and the water mol-ecules, forming a three-dimensional network. An intra-molecular bond between the ammonium group and a hydroxyl O atom is also present.

Entities:  

Year:  2008        PMID: 21202530      PMCID: PMC2961501          DOI: 10.1107/S1600536808012750

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds see: Crich et al. (2007 ▶); Di Giovanni et al. (1996 ▶); Easton et al. (1996 ▶); Madesclaire et al. (2006 ▶, 2007 ▶); Steinreiber et al. (2007 ▶); Zaitsev et al. (1998 ▶).

Experimental

Crystal data

C9H11N2O5 +·Cl−·H2O M = 280.66 Monoclinic, a = 8.1286 (17) Å b = 5.056 (3) Å c = 15.848 (3) Å β = 104.626 (17)° V = 630.2 (4) Å3 Z = 2 Mo Kα radiation μ = 0.33 mm−1 T = 293 (2) K 0.49 × 0.25 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.872, T max = 0.931 6026 measured reflections 5517 independent reflections 5058 reflections with I > 2σ(I) R int = 0.021 3 standard reflections every 63 reflections intensity decay: 3%

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.115 S = 1.09 5517 reflections 216 parameters 1 restraint All H-atom parameters refined Δρmax = 0.60 e Å−3 Δρmin = −0.63 e Å−3 Absolute structure: Flack (1983 ▶), 2752 Friedel pairs Flack parameter: 0.00 (4) Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms, 1996 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808012750/cs2076sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808012750/cs2076Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N2O5+·Cl·H2OF000 = 292
Mr = 280.66Dx = 1.479 Mg m3
Monoclinic, P21Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 25 reflections
a = 8.1286 (17) Åθ = 8–18º
b = 5.056 (3) ŵ = 0.33 mm1
c = 15.848 (3) ÅT = 293 (2) K
β = 104.626 (17)ºElongated prism, colourless
V = 630.2 (4) Å30.49 × 0.25 × 0.20 mm
Z = 2
Enraf–Nonius CAD-4 diffractometerRint = 0.022
Radiation source: fine-focus sealed tubeθmax = 35.0º
Monochromator: graphiteθmin = 1.3º
T = 293(2) Kh = −13→13
ω/2θ scansk = −8→8
Absorption correction: ψ scan(North et al., 1968)l = −25→25
Tmin = 0.872, Tmax = 0.9313 standard reflections
6026 measured reflections every 63 reflections
5517 independent reflections intensity decay: 3%
5058 reflections with I > 2σ(I)
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullAll H-atom parameters refined
R[F2 > 2σ(F2)] = 0.043  w = 1/[σ2(Fo2) + (0.0825P)2 + 0.0202P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.115(Δ/σ)max = 0.001
S = 1.09Δρmax = 0.60 e Å3
5517 reflectionsΔρmin = −0.63 e Å3
216 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.089 (10)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 2752 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.00 (4)
Experimental. North A.C.T., Phillips D.C. & Mathews F.S. (1968) Acta. Cryst. A24, 351. Number of psi-scan sets used was 4. Theta correction was applied. Weighted transmission curves were used. No Fourier smoothing was applied.
xyzUiso*/Ueq
Cl0.71520 (3)0.93514 (6)0.922526 (17)0.03591 (8)
C1−0.00336 (13)1.2561 (2)0.83505 (7)0.02674 (16)
C20.09722 (12)1.00092 (18)0.85613 (6)0.02405 (15)
C30.27337 (13)1.0067 (2)0.83713 (6)0.02743 (16)
C40.26848 (14)1.0458 (2)0.74189 (7)0.02986 (18)
C50.3717 (2)1.2362 (3)0.71889 (9)0.0427 (3)
C60.3767 (3)1.2672 (4)0.63235 (10)0.0499 (4)
C70.2774 (2)1.1044 (3)0.57084 (8)0.0415 (3)
C80.1743 (2)0.9107 (4)0.59137 (9)0.0506 (4)
C90.1720 (2)0.8796 (3)0.67820 (9)0.0459 (3)
N100.12271 (11)0.9477 (2)0.95052 (5)0.02702 (14)
N110.2786 (2)1.1354 (4)0.47874 (9)0.0569 (4)
O12−0.08726 (19)1.2705 (3)0.75327 (6)0.0491 (3)
O13−0.00519 (12)1.42165 (18)0.88974 (5)0.03491 (16)
O140.34476 (13)0.7557 (2)0.86696 (7)0.03708 (19)
O150.1882 (3)0.9890 (7)0.42545 (9)0.0966 (9)
O160.3691 (3)1.3062 (5)0.45945 (10)0.0847 (6)
H20.034 (3)0.872 (5)0.8304 (13)0.037 (5)*
H30.343 (3)1.127 (5)0.8692 (13)0.032 (5)*
H50.445 (3)1.340 (6)0.7648 (17)0.052 (6)*
H60.453 (4)1.424 (10)0.620 (2)0.091 (10)*
H80.112 (5)0.807 (10)0.548 (2)0.087 (10)*
H90.090 (4)0.766 (8)0.6899 (19)0.073 (9)*
H1010.032 (2)0.927 (4)0.9615 (10)0.025 (3)*
H1020.186 (2)0.816 (4)0.9639 (12)0.030 (4)*
H1030.174 (4)1.087 (7)0.9905 (16)0.058 (7)*
H12−0.147 (5)1.395 (10)0.743 (2)0.087 (10)*
H140.448 (3)0.778 (6)0.8856 (15)0.049 (6)*
O170.29100 (18)0.1787 (3)0.26402 (8)0.0491 (3)
H1710.307 (4)0.250 (8)0.309 (2)0.073 (9)*
H1720.290 (3)0.237 (6)0.2194 (17)0.053 (7)*
U11U22U33U12U13U23
Cl0.03069 (11)0.03544 (12)0.03887 (13)0.00116 (10)0.00372 (8)−0.00215 (10)
C10.0319 (4)0.0221 (3)0.0267 (4)0.0005 (3)0.0084 (3)0.0022 (3)
C20.0281 (3)0.0200 (3)0.0249 (3)−0.0009 (3)0.0083 (3)0.0000 (2)
C30.0288 (4)0.0274 (4)0.0276 (4)−0.0040 (3)0.0099 (3)−0.0011 (3)
C40.0339 (4)0.0297 (4)0.0287 (4)−0.0028 (3)0.0130 (3)−0.0025 (3)
C50.0576 (7)0.0393 (6)0.0359 (5)−0.0182 (6)0.0206 (5)−0.0051 (4)
C60.0705 (10)0.0481 (7)0.0377 (6)−0.0171 (7)0.0260 (6)−0.0004 (5)
C70.0531 (7)0.0457 (7)0.0295 (5)0.0025 (5)0.0176 (5)0.0005 (4)
C80.0595 (8)0.0634 (10)0.0304 (5)−0.0190 (8)0.0141 (5)−0.0110 (6)
C90.0582 (8)0.0504 (8)0.0323 (5)−0.0227 (6)0.0172 (5)−0.0090 (5)
N100.0337 (3)0.0226 (3)0.0266 (3)0.0022 (3)0.0110 (2)0.0036 (3)
N110.0739 (10)0.0692 (11)0.0324 (5)−0.0018 (8)0.0221 (6)0.0009 (6)
O120.0684 (7)0.0451 (5)0.0274 (4)0.0240 (5)0.0005 (4)0.0003 (4)
O130.0471 (4)0.0216 (3)0.0339 (3)0.0039 (3)0.0062 (3)−0.0026 (3)
O140.0310 (4)0.0371 (4)0.0441 (5)0.0061 (3)0.0112 (3)0.0058 (4)
O150.1309 (16)0.127 (2)0.0336 (5)−0.0504 (17)0.0250 (8)−0.0151 (8)
O160.1330 (17)0.0846 (12)0.0465 (7)−0.0305 (13)0.0414 (9)0.0055 (8)
O170.0652 (7)0.0431 (5)0.0357 (5)−0.0145 (5)0.0070 (4)0.0004 (4)
C1—O131.2078 (14)C7—C81.380 (2)
C1—O121.3053 (14)C7—N111.4704 (17)
C1—C21.5188 (15)C8—C91.3898 (18)
C2—N101.4821 (12)C8—H80.91 (4)
C2—C31.5360 (14)C9—H90.94 (4)
C2—H20.87 (2)N10—H1010.810 (17)
C3—O141.4253 (16)N10—H1020.83 (2)
C3—C41.5128 (14)N10—H1030.97 (3)
C3—H30.90 (2)N11—O151.219 (3)
C4—C51.3851 (17)N11—O161.222 (3)
C4—C91.3931 (18)O12—H120.78 (5)
C5—C61.3913 (19)O14—H140.82 (3)
C5—H50.97 (3)O17—H1710.78 (3)
C6—C71.372 (2)O17—H1720.76 (3)
C6—H61.05 (4)
O13—C1—O12125.15 (11)C5—C6—H6115.3 (17)
O13—C1—C2122.31 (10)C6—C7—C8122.79 (12)
O12—C1—C2112.53 (9)C6—C7—N11119.42 (14)
N10—C2—C1107.85 (8)C8—C7—N11117.79 (14)
N10—C2—C3107.55 (8)C7—C8—C9118.33 (14)
C1—C2—C3114.68 (8)C7—C8—H8119 (3)
N10—C2—H2104.6 (14)C9—C8—H8123 (3)
C1—C2—H2108.4 (15)C8—C9—C4120.22 (13)
C3—C2—H2113.1 (14)C8—C9—H9117.0 (19)
O14—C3—C4110.69 (9)C4—C9—H9121.9 (19)
O14—C3—C2103.87 (8)C2—N10—H101109.8 (11)
C4—C3—C2114.02 (9)C2—N10—H102108.8 (13)
O14—C3—H3105.5 (14)H101—N10—H102112 (2)
C4—C3—H3109.3 (13)C2—N10—H103117.1 (17)
C2—C3—H3113.1 (13)H101—N10—H103102 (2)
C5—C4—C9119.76 (11)H102—N10—H103106 (2)
C5—C4—C3119.24 (10)O15—N11—O16123.43 (16)
C9—C4—C3120.81 (10)O15—N11—C7117.97 (18)
C4—C5—C6120.54 (13)O16—N11—C7118.60 (17)
C4—C5—H5118.4 (17)C1—O12—H12113 (2)
C6—C5—H5120.9 (17)C3—O14—H14107 (2)
C7—C6—C5118.32 (13)H171—O17—H172129 (4)
C7—C6—H6126.2 (17)
O15—N11—C7—C6−179.5 (2)O14—C3—C4—C962.57 (15)
O16—N11—C7—C60.2 (3)O14—C3—C4—C5−112.37 (13)
O15—N11—C7—C80.2 (3)C2—C3—C4—C9−54.08 (14)
O16—N11—C7—C8179.9 (2)C5—C4—C9—C8−2.4 (2)
O12—C1—C2—C384.78 (12)C3—C4—C9—C8−177.27 (13)
O12—C1—C2—N10−155.44 (11)C9—C4—C5—C61.6 (2)
O13—C1—C2—N1023.39 (14)C3—C4—C5—C6176.57 (15)
O13—C1—C2—C3−96.39 (12)C4—C5—C6—C7−0.2 (3)
C1—C2—C3—O14176.50 (9)C5—C6—C7—N11179.19 (18)
C1—C2—C3—C4−62.95 (11)C5—C6—C7—C8−0.5 (3)
N10—C2—C3—C4177.11 (8)C6—C7—C8—C9−0.2 (3)
N10—C2—C3—O1456.56 (10)N11—C7—C8—C9−179.96 (17)
C2—C3—C4—C5130.98 (12)C7—C8—C9—C41.7 (2)
D—H···AD—HH···AD···AD—H···A
N10—H101···O13i0.810 (17)2.420 (16)2.9259 (13)121.5 (14)
N10—H101···Clii0.810 (17)2.489 (16)3.2298 (11)152.7 (15)
N10—H102···O140.83 (2)2.265 (19)2.6759 (14)110.8 (16)
N10—H102···Cliii0.83 (2)2.62 (2)3.3409 (14)145.5 (16)
N10—H103···Cliv0.97 (3)2.28 (3)3.2435 (14)176 (3)
O12—H12···O17v0.78 (5)1.84 (5)2.6168 (19)171 (4)
O14—H14···Cl0.82 (3)2.25 (3)3.0539 (13)166 (3)
O17—H171···O16vi0.78 (3)2.33 (3)3.069 (2)159 (4)
O17—H172···Clvii0.76 (3)2.45 (3)3.2170 (13)178 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N10—H101⋯O13i0.810 (17)2.420 (16)2.9259 (13)121.5 (14)
N10—H101⋯Clii0.810 (17)2.489 (16)3.2298 (11)152.7 (15)
N10—H102⋯O140.83 (2)2.265 (19)2.6759 (14)110.8 (16)
N10—H102⋯Cliii0.83 (2)2.62 (2)3.3409 (14)145.5 (16)
N10—H103⋯Cliv0.97 (3)2.28 (3)3.2435 (14)176 (3)
O12—H12⋯O17v0.78 (5)1.84 (5)2.6168 (19)171 (4)
O14—H14⋯Cl0.82 (3)2.25 (3)3.0539 (13)166 (3)
O17—H171⋯O16vi0.78 (3)2.33 (3)3.069 (2)159 (4)
O17—H172⋯Clvii0.76 (3)2.45 (3)3.2170 (13)178 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  O-sialylation with N-acetyl-5-n,4-o-carbonyl-protected thiosialoside donors in dichloromethane: facile and selective cleavage of the oxazolidinone ring.

Authors:  David Crich; Wenju Li
Journal:  J Org Chem       Date:  2007-03-06       Impact factor: 4.354

  2 in total

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