| Literature DB >> 21202530 |
Vincent Gaumet, Valérie Weber, Valery P Zaitsev, Michel Madesclaire.
Abstract
The title compound, C(9)H(11)N(2)O(5) (+)·Cl(-)·H(2)O, was synthesized from (1S,2S)-2-amino-1-(4-nitro-phen-yl)propane-1,3-diol in four steps. As demonstrated by this work, no racemization occurs during this synthetic procedure. The crystal structure displays many inter-molecular hydrogen bonds between the acidic cation, chloride anions and the water mol-ecules, forming a three-dimensional network. An intra-molecular bond between the ammonium group and a hydroxyl O atom is also present.Entities:
Year: 2008 PMID: 21202530 PMCID: PMC2961501 DOI: 10.1107/S1600536808012750
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H11N2O5+·Cl–·H2O | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 25 reflections |
| θ = 8–18º | |
| µ = 0.33 mm−1 | |
| β = 104.626 (17)º | Elongated prism, colourless |
| 0.49 × 0.25 × 0.20 mm | |
| Enraf–Nonius CAD-4 diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 35.0º |
| Monochromator: graphite | θmin = 1.3º |
| ω/2θ scans | |
| Absorption correction: ψ scan(North et al., 1968) | |
| 3 standard reflections | |
| 6026 measured reflections | every 63 reflections |
| 5517 independent reflections | intensity decay: 3% |
| 5058 reflections with |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | All H-atom parameters refined |
| | |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.60 e Å−3 | |
| 5517 reflections | Δρmin = −0.63 e Å−3 |
| 216 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 1 restraint | Extinction coefficient: 0.089 (10) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 2752 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: 0.00 (4) |
| Experimental. North A.C.T., Phillips D.C. & Mathews F.S. (1968) Acta. Cryst. A24, 351. Number of psi-scan sets used was 4. Theta correction was applied. Weighted transmission curves were used. No Fourier smoothing was applied. |
| Cl | 0.71520 (3) | 0.93514 (6) | 0.922526 (17) | 0.03591 (8) | |
| C1 | −0.00336 (13) | 1.2561 (2) | 0.83505 (7) | 0.02674 (16) | |
| C2 | 0.09722 (12) | 1.00092 (18) | 0.85613 (6) | 0.02405 (15) | |
| C3 | 0.27337 (13) | 1.0067 (2) | 0.83713 (6) | 0.02743 (16) | |
| C4 | 0.26848 (14) | 1.0458 (2) | 0.74189 (7) | 0.02986 (18) | |
| C5 | 0.3717 (2) | 1.2362 (3) | 0.71889 (9) | 0.0427 (3) | |
| C6 | 0.3767 (3) | 1.2672 (4) | 0.63235 (10) | 0.0499 (4) | |
| C7 | 0.2774 (2) | 1.1044 (3) | 0.57084 (8) | 0.0415 (3) | |
| C8 | 0.1743 (2) | 0.9107 (4) | 0.59137 (9) | 0.0506 (4) | |
| C9 | 0.1720 (2) | 0.8796 (3) | 0.67820 (9) | 0.0459 (3) | |
| N10 | 0.12271 (11) | 0.9477 (2) | 0.95052 (5) | 0.02702 (14) | |
| N11 | 0.2786 (2) | 1.1354 (4) | 0.47874 (9) | 0.0569 (4) | |
| O12 | −0.08726 (19) | 1.2705 (3) | 0.75327 (6) | 0.0491 (3) | |
| O13 | −0.00519 (12) | 1.42165 (18) | 0.88974 (5) | 0.03491 (16) | |
| O14 | 0.34476 (13) | 0.7557 (2) | 0.86696 (7) | 0.03708 (19) | |
| O15 | 0.1882 (3) | 0.9890 (7) | 0.42545 (9) | 0.0966 (9) | |
| O16 | 0.3691 (3) | 1.3062 (5) | 0.45945 (10) | 0.0847 (6) | |
| H2 | 0.034 (3) | 0.872 (5) | 0.8304 (13) | 0.037 (5)* | |
| H3 | 0.343 (3) | 1.127 (5) | 0.8692 (13) | 0.032 (5)* | |
| H5 | 0.445 (3) | 1.340 (6) | 0.7648 (17) | 0.052 (6)* | |
| H6 | 0.453 (4) | 1.424 (10) | 0.620 (2) | 0.091 (10)* | |
| H8 | 0.112 (5) | 0.807 (10) | 0.548 (2) | 0.087 (10)* | |
| H9 | 0.090 (4) | 0.766 (8) | 0.6899 (19) | 0.073 (9)* | |
| H101 | 0.032 (2) | 0.927 (4) | 0.9615 (10) | 0.025 (3)* | |
| H102 | 0.186 (2) | 0.816 (4) | 0.9639 (12) | 0.030 (4)* | |
| H103 | 0.174 (4) | 1.087 (7) | 0.9905 (16) | 0.058 (7)* | |
| H12 | −0.147 (5) | 1.395 (10) | 0.743 (2) | 0.087 (10)* | |
| H14 | 0.448 (3) | 0.778 (6) | 0.8856 (15) | 0.049 (6)* | |
| O17 | 0.29100 (18) | 0.1787 (3) | 0.26402 (8) | 0.0491 (3) | |
| H171 | 0.307 (4) | 0.250 (8) | 0.309 (2) | 0.073 (9)* | |
| H172 | 0.290 (3) | 0.237 (6) | 0.2194 (17) | 0.053 (7)* |
| Cl | 0.03069 (11) | 0.03544 (12) | 0.03887 (13) | 0.00116 (10) | 0.00372 (8) | −0.00215 (10) |
| C1 | 0.0319 (4) | 0.0221 (3) | 0.0267 (4) | 0.0005 (3) | 0.0084 (3) | 0.0022 (3) |
| C2 | 0.0281 (3) | 0.0200 (3) | 0.0249 (3) | −0.0009 (3) | 0.0083 (3) | 0.0000 (2) |
| C3 | 0.0288 (4) | 0.0274 (4) | 0.0276 (4) | −0.0040 (3) | 0.0099 (3) | −0.0011 (3) |
| C4 | 0.0339 (4) | 0.0297 (4) | 0.0287 (4) | −0.0028 (3) | 0.0130 (3) | −0.0025 (3) |
| C5 | 0.0576 (7) | 0.0393 (6) | 0.0359 (5) | −0.0182 (6) | 0.0206 (5) | −0.0051 (4) |
| C6 | 0.0705 (10) | 0.0481 (7) | 0.0377 (6) | −0.0171 (7) | 0.0260 (6) | −0.0004 (5) |
| C7 | 0.0531 (7) | 0.0457 (7) | 0.0295 (5) | 0.0025 (5) | 0.0176 (5) | 0.0005 (4) |
| C8 | 0.0595 (8) | 0.0634 (10) | 0.0304 (5) | −0.0190 (8) | 0.0141 (5) | −0.0110 (6) |
| C9 | 0.0582 (8) | 0.0504 (8) | 0.0323 (5) | −0.0227 (6) | 0.0172 (5) | −0.0090 (5) |
| N10 | 0.0337 (3) | 0.0226 (3) | 0.0266 (3) | 0.0022 (3) | 0.0110 (2) | 0.0036 (3) |
| N11 | 0.0739 (10) | 0.0692 (11) | 0.0324 (5) | −0.0018 (8) | 0.0221 (6) | 0.0009 (6) |
| O12 | 0.0684 (7) | 0.0451 (5) | 0.0274 (4) | 0.0240 (5) | 0.0005 (4) | 0.0003 (4) |
| O13 | 0.0471 (4) | 0.0216 (3) | 0.0339 (3) | 0.0039 (3) | 0.0062 (3) | −0.0026 (3) |
| O14 | 0.0310 (4) | 0.0371 (4) | 0.0441 (5) | 0.0061 (3) | 0.0112 (3) | 0.0058 (4) |
| O15 | 0.1309 (16) | 0.127 (2) | 0.0336 (5) | −0.0504 (17) | 0.0250 (8) | −0.0151 (8) |
| O16 | 0.1330 (17) | 0.0846 (12) | 0.0465 (7) | −0.0305 (13) | 0.0414 (9) | 0.0055 (8) |
| O17 | 0.0652 (7) | 0.0431 (5) | 0.0357 (5) | −0.0145 (5) | 0.0070 (4) | 0.0004 (4) |
| C1—O13 | 1.2078 (14) | C7—C8 | 1.380 (2) |
| C1—O12 | 1.3053 (14) | C7—N11 | 1.4704 (17) |
| C1—C2 | 1.5188 (15) | C8—C9 | 1.3898 (18) |
| C2—N10 | 1.4821 (12) | C8—H8 | 0.91 (4) |
| C2—C3 | 1.5360 (14) | C9—H9 | 0.94 (4) |
| C2—H2 | 0.87 (2) | N10—H101 | 0.810 (17) |
| C3—O14 | 1.4253 (16) | N10—H102 | 0.83 (2) |
| C3—C4 | 1.5128 (14) | N10—H103 | 0.97 (3) |
| C3—H3 | 0.90 (2) | N11—O15 | 1.219 (3) |
| C4—C5 | 1.3851 (17) | N11—O16 | 1.222 (3) |
| C4—C9 | 1.3931 (18) | O12—H12 | 0.78 (5) |
| C5—C6 | 1.3913 (19) | O14—H14 | 0.82 (3) |
| C5—H5 | 0.97 (3) | O17—H171 | 0.78 (3) |
| C6—C7 | 1.372 (2) | O17—H172 | 0.76 (3) |
| C6—H6 | 1.05 (4) | ||
| O13—C1—O12 | 125.15 (11) | C5—C6—H6 | 115.3 (17) |
| O13—C1—C2 | 122.31 (10) | C6—C7—C8 | 122.79 (12) |
| O12—C1—C2 | 112.53 (9) | C6—C7—N11 | 119.42 (14) |
| N10—C2—C1 | 107.85 (8) | C8—C7—N11 | 117.79 (14) |
| N10—C2—C3 | 107.55 (8) | C7—C8—C9 | 118.33 (14) |
| C1—C2—C3 | 114.68 (8) | C7—C8—H8 | 119 (3) |
| N10—C2—H2 | 104.6 (14) | C9—C8—H8 | 123 (3) |
| C1—C2—H2 | 108.4 (15) | C8—C9—C4 | 120.22 (13) |
| C3—C2—H2 | 113.1 (14) | C8—C9—H9 | 117.0 (19) |
| O14—C3—C4 | 110.69 (9) | C4—C9—H9 | 121.9 (19) |
| O14—C3—C2 | 103.87 (8) | C2—N10—H101 | 109.8 (11) |
| C4—C3—C2 | 114.02 (9) | C2—N10—H102 | 108.8 (13) |
| O14—C3—H3 | 105.5 (14) | H101—N10—H102 | 112 (2) |
| C4—C3—H3 | 109.3 (13) | C2—N10—H103 | 117.1 (17) |
| C2—C3—H3 | 113.1 (13) | H101—N10—H103 | 102 (2) |
| C5—C4—C9 | 119.76 (11) | H102—N10—H103 | 106 (2) |
| C5—C4—C3 | 119.24 (10) | O15—N11—O16 | 123.43 (16) |
| C9—C4—C3 | 120.81 (10) | O15—N11—C7 | 117.97 (18) |
| C4—C5—C6 | 120.54 (13) | O16—N11—C7 | 118.60 (17) |
| C4—C5—H5 | 118.4 (17) | C1—O12—H12 | 113 (2) |
| C6—C5—H5 | 120.9 (17) | C3—O14—H14 | 107 (2) |
| C7—C6—C5 | 118.32 (13) | H171—O17—H172 | 129 (4) |
| C7—C6—H6 | 126.2 (17) | ||
| O15—N11—C7—C6 | −179.5 (2) | O14—C3—C4—C9 | 62.57 (15) |
| O16—N11—C7—C6 | 0.2 (3) | O14—C3—C4—C5 | −112.37 (13) |
| O15—N11—C7—C8 | 0.2 (3) | C2—C3—C4—C9 | −54.08 (14) |
| O16—N11—C7—C8 | 179.9 (2) | C5—C4—C9—C8 | −2.4 (2) |
| O12—C1—C2—C3 | 84.78 (12) | C3—C4—C9—C8 | −177.27 (13) |
| O12—C1—C2—N10 | −155.44 (11) | C9—C4—C5—C6 | 1.6 (2) |
| O13—C1—C2—N10 | 23.39 (14) | C3—C4—C5—C6 | 176.57 (15) |
| O13—C1—C2—C3 | −96.39 (12) | C4—C5—C6—C7 | −0.2 (3) |
| C1—C2—C3—O14 | 176.50 (9) | C5—C6—C7—N11 | 179.19 (18) |
| C1—C2—C3—C4 | −62.95 (11) | C5—C6—C7—C8 | −0.5 (3) |
| N10—C2—C3—C4 | 177.11 (8) | C6—C7—C8—C9 | −0.2 (3) |
| N10—C2—C3—O14 | 56.56 (10) | N11—C7—C8—C9 | −179.96 (17) |
| C2—C3—C4—C5 | 130.98 (12) | C7—C8—C9—C4 | 1.7 (2) |
| H··· | ||||
| N10—H101···O13i | 0.810 (17) | 2.420 (16) | 2.9259 (13) | 121.5 (14) |
| N10—H101···Clii | 0.810 (17) | 2.489 (16) | 3.2298 (11) | 152.7 (15) |
| N10—H102···O14 | 0.83 (2) | 2.265 (19) | 2.6759 (14) | 110.8 (16) |
| N10—H102···Cliii | 0.83 (2) | 2.62 (2) | 3.3409 (14) | 145.5 (16) |
| N10—H103···Cliv | 0.97 (3) | 2.28 (3) | 3.2435 (14) | 176 (3) |
| O12—H12···O17v | 0.78 (5) | 1.84 (5) | 2.6168 (19) | 171 (4) |
| O14—H14···Cl | 0.82 (3) | 2.25 (3) | 3.0539 (13) | 166 (3) |
| O17—H171···O16vi | 0.78 (3) | 2.33 (3) | 3.069 (2) | 159 (4) |
| O17—H172···Clvii | 0.76 (3) | 2.45 (3) | 3.2170 (13) | 178 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N10—H101⋯O13i | 0.810 (17) | 2.420 (16) | 2.9259 (13) | 121.5 (14) |
| N10—H101⋯Clii | 0.810 (17) | 2.489 (16) | 3.2298 (11) | 152.7 (15) |
| N10—H102⋯O14 | 0.83 (2) | 2.265 (19) | 2.6759 (14) | 110.8 (16) |
| N10—H102⋯Cliii | 0.83 (2) | 2.62 (2) | 3.3409 (14) | 145.5 (16) |
| N10—H103⋯Cliv | 0.97 (3) | 2.28 (3) | 3.2435 (14) | 176 (3) |
| O12—H12⋯O17v | 0.78 (5) | 1.84 (5) | 2.6168 (19) | 171 (4) |
| O14—H14⋯Cl | 0.82 (3) | 2.25 (3) | 3.0539 (13) | 166 (3) |
| O17—H171⋯O16vi | 0.78 (3) | 2.33 (3) | 3.069 (2) | 159 (4) |
| O17—H172⋯Clvii | 0.76 (3) | 2.45 (3) | 3.2170 (13) | 178 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .