Literature DB >> 21202409

2-(Benzyl-sulfan-yl)pyridine N-oxide.

B Ravindran Durai Nayagam, Samuel Robinson Jebas, H Johnson Jeyakumar, Dieter Schollmeyer.   

Abstract

In the title compound, C(12)H(11)NOS, the dihedral angle between the oxopyridinium and phenyl rings is 58.40 (1)°. The crystal structure is stabilized by C-H⋯O hydrogen bonds, π-π stacking inter-actions involving the pyridinium rings [centroid-centroid distance = 3.6891 (9) Å] and C-H⋯π inter-actions.

Entities:  

Year:  2008        PMID: 21202409      PMCID: PMC2961086          DOI: 10.1107/S1600536808011446

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al.(1987 ▶). For biological activities of N-oxide derivatives, see: Bovin et al. (1992 ▶); Katsuyuki et al. (1991 ▶); Leonard et al. (1955 ▶); Lobana & Bhatia (1989 ▶); Symons & West (1985 ▶). For related literature, see: Jebas et al. (2005 ▶); Ravindran et al. (2008 ▶).

Experimental

Crystal data

C12H11NOS M = 217.28 Monoclinic, a = 5.7277 (2) Å b = 15.8760 (3) Å c = 11.6498 (4) Å β = 97.816 (2)° V = 1049.51 (6) Å3 Z = 4 Cu Kα radiation μ = 2.49 mm−1 T = 298 (2) K 0.6 × 0.32 × 0.16 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: numerical (CORINC; Draeger & Gattow, 1971 ▶) T min = 0.423, T max = 0.676 2183 measured reflections 1979 independent reflections 1865 reflections with I > 2σ(I) R int = 0.020 3 standard reflections frequency: 60 min intensity decay: 3%

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.088 S = 1.05 1979 reflections 137 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: CORINC (Draeger & Gattow, 1971 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011446/ci2583sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011446/ci2583Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11NOSF000 = 456
Mr = 217.28Dx = 1.375 Mg m3
Monoclinic, P21/cCu Kα radiation λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 5.7277 (2) Åθ = 65–70º
b = 15.8760 (3) ŵ = 2.49 mm1
c = 11.6498 (4) ÅT = 298 (2) K
β = 97.816 (2)ºPlate, colourless
V = 1049.51 (6) Å30.6 × 0.32 × 0.16 mm
Z = 4
Enraf–Nonius CAD-4 diffractometerRint = 0.020
Monochromator: graphiteθmax = 69.9º
T = 298(2) Kθmin = 4.7º
ω/2θ scansh = 0→6
Absorption correction: numerical(CORINC; Draeger & Gattow, 1971)k = 0→19
Tmin = 0.423, Tmax = 0.676l = −14→14
2183 measured reflections3 standard reflections
1979 independent reflections every 60 min
1865 reflections with I > 2σ(I) intensity decay: 3%
Refinement on F2H-atom parameters constrained
Least-squares matrix: full  w = 1/[σ2(Fo2) + (0.0468P)2 + 0.3205P] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.032(Δ/σ)max = 0.001
wR(F2) = 0.088Δρmax = 0.23 e Å3
S = 1.05Δρmin = −0.23 e Å3
1979 reflectionsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
137 parametersExtinction coefficient: 0.0138 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.0305 (2)0.50000 (9)0.21475 (12)0.0323 (3)
C20.2020 (3)0.55970 (10)0.20485 (13)0.0397 (4)
H20.34460.55750.25360.048*
C30.1620 (3)0.62241 (11)0.12302 (14)0.0462 (4)
H30.27680.66290.11650.055*
C4−0.0502 (3)0.62477 (11)0.05064 (14)0.0456 (4)
H4−0.07880.6668−0.0050.055*
C5−0.2179 (3)0.56490 (11)0.06128 (13)0.0426 (4)
H5−0.36050.56640.01250.051*
N6−0.1782 (2)0.50342 (8)0.14226 (10)0.0358 (3)
O7−0.33607 (19)0.44536 (8)0.15290 (11)0.0507 (3)
S80.04017 (6)0.41513 (2)0.31047 (3)0.03918 (16)
C90.3207 (3)0.43634 (10)0.39937 (14)0.0415 (4)
H9A0.44750.43380.35220.05*
H9B0.3190.49230.43270.05*
C100.3594 (2)0.37147 (9)0.49432 (12)0.0348 (3)
C110.5483 (3)0.31656 (10)0.50101 (13)0.0404 (4)
H110.65170.31970.44620.049*
C120.5852 (3)0.25699 (10)0.58820 (15)0.0465 (4)
H120.71380.22080.59190.056*
C130.4330 (3)0.25101 (11)0.66927 (14)0.0481 (4)
H130.45650.21030.72710.058*
C140.2452 (3)0.30575 (13)0.66418 (15)0.0527 (4)
H140.14260.30240.71940.063*
C150.2084 (3)0.36542 (11)0.57771 (14)0.0461 (4)
H150.0810.4020.57520.055*
U11U22U33U12U13U23
C10.0293 (7)0.0344 (7)0.0321 (7)0.0014 (5)−0.0005 (5)−0.0014 (5)
C20.0311 (7)0.0454 (8)0.0407 (8)−0.0045 (6)−0.0019 (6)0.0043 (6)
C30.0422 (9)0.0470 (9)0.0482 (9)−0.0091 (7)0.0021 (7)0.0095 (7)
C40.0481 (9)0.0473 (9)0.0397 (8)0.0013 (7)0.0004 (7)0.0105 (7)
C50.0381 (8)0.0479 (9)0.0382 (8)0.0026 (7)−0.0073 (6)0.0031 (7)
N60.0298 (6)0.0378 (6)0.0377 (6)−0.0022 (5)−0.0027 (5)−0.0023 (5)
O70.0360 (6)0.0504 (7)0.0612 (7)−0.0139 (5)−0.0092 (5)0.0073 (6)
S80.0355 (2)0.0354 (2)0.0437 (2)−0.00537 (13)−0.00524 (15)0.00604 (14)
C90.0362 (8)0.0388 (8)0.0459 (8)−0.0033 (6)−0.0075 (6)0.0058 (6)
C100.0342 (7)0.0324 (7)0.0355 (7)−0.0012 (6)−0.0035 (5)−0.0015 (6)
C110.0370 (8)0.0444 (8)0.0397 (7)0.0034 (6)0.0044 (6)−0.0004 (6)
C120.0460 (9)0.0408 (8)0.0502 (9)0.0109 (7)−0.0024 (7)0.0025 (7)
C130.0590 (10)0.0445 (9)0.0374 (8)−0.0046 (7)−0.0054 (7)0.0064 (7)
C140.0543 (10)0.0660 (11)0.0393 (8)−0.0035 (9)0.0121 (7)0.0004 (8)
C150.0421 (9)0.0505 (9)0.0458 (8)0.0107 (7)0.0065 (7)−0.0034 (7)
C1—N61.3678 (18)C9—H9A0.97
C1—C21.381 (2)C9—H9B0.97
C1—S81.7450 (14)C10—C111.383 (2)
C2—C31.376 (2)C10—C151.389 (2)
C2—H20.93C11—C121.383 (2)
C3—C41.382 (2)C11—H110.93
C3—H30.93C12—C131.373 (2)
C4—C51.369 (2)C12—H120.93
C4—H40.93C13—C141.378 (3)
C5—N61.355 (2)C13—H130.93
C5—H50.93C14—C151.378 (2)
N6—O71.3090 (16)C14—H140.93
S8—C91.8205 (15)C15—H150.93
C9—C101.505 (2)
N6—C1—C2119.53 (13)C10—C9—H9B109.9
N6—C1—S8111.98 (10)S8—C9—H9B109.9
C2—C1—S8128.49 (11)H9A—C9—H9B108.3
C3—C2—C1120.09 (14)C11—C10—C15118.26 (14)
C3—C2—H2120C11—C10—C9120.56 (14)
C1—C2—H2120C15—C10—C9121.18 (14)
C2—C3—C4119.47 (15)C12—C11—C10120.85 (14)
C2—C3—H3120.3C12—C11—H11119.6
C4—C3—H3120.3C10—C11—H11119.6
C5—C4—C3119.71 (15)C13—C12—C11120.29 (15)
C5—C4—H4120.1C13—C12—H12119.9
C3—C4—H4120.1C11—C12—H12119.9
N6—C5—C4120.65 (14)C12—C13—C14119.47 (15)
N6—C5—H5119.7C12—C13—H13120.3
C4—C5—H5119.7C14—C13—H13120.3
O7—N6—C5121.37 (12)C13—C14—C15120.39 (16)
O7—N6—C1118.08 (12)C13—C14—H14119.8
C5—N6—C1120.55 (12)C15—C14—H14119.8
C1—S8—C999.76 (7)C14—C15—C10120.73 (15)
C10—C9—S8108.78 (10)C14—C15—H15119.6
C10—C9—H9A109.9C10—C15—H15119.6
S8—C9—H9A109.9
N6—C1—C2—C30.4 (2)C2—C1—S8—C95.82 (16)
S8—C1—C2—C3179.80 (13)C1—S8—C9—C10177.00 (11)
C1—C2—C3—C4−0.4 (3)S8—C9—C10—C11117.36 (14)
C2—C3—C4—C50.1 (3)S8—C9—C10—C15−63.08 (17)
C3—C4—C5—N60.1 (3)C15—C10—C11—C120.2 (2)
C4—C5—N6—O7−179.46 (15)C9—C10—C11—C12179.81 (14)
C4—C5—N6—C1−0.1 (2)C10—C11—C12—C130.5 (3)
C2—C1—N6—O7179.21 (13)C11—C12—C13—C14−1.0 (3)
S8—C1—N6—O7−0.28 (16)C12—C13—C14—C150.8 (3)
C2—C1—N6—C5−0.2 (2)C13—C14—C15—C100.0 (3)
S8—C1—N6—C5−179.65 (11)C11—C10—C15—C14−0.5 (2)
N6—C1—S8—C9−174.73 (11)C9—C10—C15—C14179.91 (15)
D—H···AD—HH···AD···AD—H···A
C5—H5···O7i0.932.423.323 (2)164
C14—H14···Cg1ii0.932.923.560 (2)127
C4—H4···Cg2iii0.932.993.777 (2)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O7i0.932.423.323 (2)164
C14—H14⋯Cg1ii0.932.923.560 (2)127
C4—H4⋯Cg2iii0.932.993.777 (2)143

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the ring C1–C5/N6 and Cg2 is the centroid of the ring C10–C15.

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,2'-[2,3,5,6-Tetra-methyl-p-phenyl-ene-bis(methyl-enethio)]bis-(pyridine N-oxide).

Authors:  B Ravindran Durai Nayagam; Samuel Robinson Jebas; Selvarathi Grace; Dieter Schollmeyer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-09
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.