Literature DB >> 21202375

(4R,5R,6S,7R,8S,9R,10S,13S)-7,8β-Epoxy-momilactone-A.

Rana Shabnam Habib, Muhammad Jamshaid, M Nawaz Tahir, Tahir Javed Khan, Islam Ullah Khan.   

Abstract

The title compound, C(20)H(26)O(4), was extracted from Leucas Urticifolia, a wild Lamiaceae herb distributed in the Punjab, Baluchistan, Sindh and the Rajputana desert of Pakistan. The plant is utilized for various medicinal applications by the local community. The title compound is based on the pimarane-diterpene skeleton. The mol-ecule exhibits an ep-oxy ring fused to momilactone-A, leading to a penta-cyclic mol-ecular structure. The absolute configuration was assigned by comparison with the crystal structure of momilactone, but needs further verification. The crystal structure is governed by four inter-molecular hydrogen-bond inter-actions of the C-H⋯O type.

Entities:  

Year:  2008        PMID: 21202375      PMCID: PMC2961202          DOI: 10.1107/S1600536808010556

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Bhattecharjee (2004 ▶); Germain & Deslongchamps (2002 ▶); Kato et al. (1973 ▶); Kiritikhar & Basu (2005 ▶); Misra et al. (1992 ▶, 1993 ▶, 1995 ▶).

Experimental

Crystal data

C20H26O4 M = 330.41 Orthorhombic, a = 6.3996 (7) Å b = 13.1759 (3) Å c = 20.854 (1) Å V = 1758.4 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 (2) K 0.25 × 0.10 × 0.09 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.980, T max = 0.990 19288 measured reflections 2635 independent reflections 1202 reflections with I > 2σ(I) R int = 0.075

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.117 S = 1.03 2635 reflections 223 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808010556/im2057sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808010556/im2057Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H26O4F000 = 712
Mr = 330.41Dx = 1.248 Mg m3
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1295 reflections
a = 6.3996 (7) Åθ = 1.6–28.6º
b = 13.1759 (3) ŵ = 0.09 mm1
c = 20.854 (1) ÅT = 296 (2) K
V = 1758.4 (2) Å3Needle, colourless
Z = 40.25 × 0.10 × 0.09 mm
Bruker Kappa APEX2 CCD diffractometer2635 independent reflections
Radiation source: fine-focus sealed tube1202 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.075
Detector resolution: 7.30 pixels mm-1θmax = 28.9º
T = 296(2) Kθmin = 2.5º
ω scansh = −8→8
Absorption correction: multi-scan(SADABS; Bruker, 2005)k = −17→14
Tmin = 0.980, Tmax = 0.990l = −28→28
19288 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.117  w = 1/[σ2(Fo2) + (0.0443P)2 + 0.0772P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2635 reflectionsΔρmax = 0.14 e Å3
223 parametersΔρmin = −0.17 e Å3
Primary atom site location: structure-invariant direct methodsExtinction coefficient: ?
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The low data parameter ratio is due to the small size of the crystal as well as to the absence of heavy atoms.
xyzUiso*/Ueq
O10.2901 (4)0.5384 (2)0.77739 (11)0.1276 (11)
O20.6901 (4)0.54820 (17)0.70678 (11)0.0895 (7)
O30.6511 (3)0.64702 (13)0.62196 (9)0.0641 (5)
O40.4101 (3)0.82859 (12)0.50957 (8)0.0624 (5)
C10.0673 (4)0.7697 (2)0.70647 (13)0.0687 (8)
H1A−0.05110.75240.67960.082*
H1B0.03470.83240.72880.082*
C20.1031 (5)0.6849 (2)0.75567 (14)0.0848 (10)
H2A0.15510.71590.79470.102*
H2B−0.03160.65510.76570.102*
C30.2466 (5)0.6019 (3)0.73828 (15)0.0739 (9)
C40.3374 (5)0.5948 (2)0.67075 (12)0.0577 (7)
C50.2923 (4)0.68587 (18)0.62796 (11)0.0499 (7)
H50.16730.67160.60240.060*
C60.4805 (4)0.68849 (19)0.58381 (11)0.0553 (7)
H60.45450.64340.54730.066*
C70.5436 (4)0.7907 (2)0.55901 (11)0.0535 (7)
H70.69370.80280.55370.064*
C80.4140 (4)0.87944 (18)0.57182 (11)0.0462 (6)
C90.2192 (4)0.86667 (18)0.61280 (11)0.0459 (6)
H90.11000.83970.58460.055*
C100.2590 (4)0.78561 (18)0.66466 (11)0.0449 (6)
C110.1424 (5)0.9704 (2)0.63641 (13)0.0654 (8)
H11A0.00370.96390.65470.078*
H11B0.23540.99600.66940.078*
C120.1373 (5)1.0436 (2)0.57995 (14)0.0672 (8)
H12A0.06861.10580.59320.081*
H12B0.05511.01390.54570.081*
C130.3552 (5)1.06931 (19)0.55425 (14)0.0631 (8)
C140.5096 (4)0.98319 (19)0.57133 (14)0.0608 (8)
H14A0.62350.98390.54060.073*
H14B0.56840.99680.61330.073*
C150.3421 (6)1.0775 (3)0.48310 (17)0.0956 (12)
H150.30701.01780.46190.115*
C160.3716 (10)1.1536 (5)0.4474 (3)0.171 (3)
C170.4321 (6)1.1672 (2)0.5862 (2)0.1304 (16)
H17A0.44031.15730.63170.196*
H17B0.33631.22130.57700.196*
H17C0.56791.18430.56990.196*
C180.5739 (5)0.5923 (2)0.67153 (14)0.0635 (8)
C190.2609 (7)0.4944 (2)0.64183 (16)0.1028 (13)
H19A0.11090.49390.64090.154*
H19B0.30990.43890.66750.154*
H19C0.31390.48760.59900.154*
C200.4458 (4)0.81615 (19)0.70649 (11)0.0535 (7)
H20A0.56650.82590.67990.080*
H20B0.47350.76350.73720.080*
H20C0.41430.87820.72860.080*
H16A0.378 (5)1.143 (2)0.4045 (13)0.080*
H16B0.397 (5)1.214 (2)0.4727 (13)0.080*
U11U22U33U12U13U23
O10.124 (2)0.153 (2)0.1054 (19)0.0407 (19)0.0296 (18)0.0790 (18)
O20.0755 (17)0.0982 (17)0.0950 (15)0.0171 (13)−0.0114 (13)0.0445 (13)
O30.0669 (13)0.0666 (12)0.0588 (11)0.0172 (10)0.0070 (11)0.0134 (10)
O40.0828 (15)0.0634 (12)0.0409 (10)0.0064 (10)−0.0036 (9)0.0013 (9)
C10.0527 (19)0.082 (2)0.0713 (19)−0.0007 (16)0.0122 (16)0.0101 (18)
C20.072 (2)0.105 (3)0.078 (2)−0.011 (2)0.0138 (18)0.028 (2)
C30.061 (2)0.084 (2)0.077 (2)−0.0048 (19)−0.0003 (18)0.0255 (19)
C40.063 (2)0.0541 (17)0.0558 (18)−0.0116 (16)−0.0113 (16)0.0105 (14)
C50.0542 (18)0.0468 (16)0.0487 (14)−0.0096 (13)−0.0153 (13)0.0047 (13)
C60.074 (2)0.0522 (18)0.0399 (14)0.0088 (15)−0.0037 (15)−0.0001 (13)
C70.0567 (18)0.0583 (18)0.0455 (15)0.0058 (14)0.0061 (14)0.0049 (13)
C80.0454 (16)0.0496 (16)0.0435 (14)0.0008 (13)−0.0021 (13)−0.0003 (12)
C90.0398 (16)0.0517 (16)0.0462 (14)0.0009 (12)−0.0024 (13)0.0008 (13)
C100.0387 (15)0.0545 (17)0.0415 (13)−0.0029 (12)−0.0001 (13)−0.0006 (13)
C110.064 (2)0.0643 (18)0.0679 (19)0.0148 (17)0.0105 (16)−0.0003 (16)
C120.069 (2)0.0561 (18)0.076 (2)0.0125 (16)0.0017 (18)0.0033 (15)
C130.059 (2)0.0462 (18)0.084 (2)−0.0008 (15)−0.0015 (17)0.0065 (16)
C140.0503 (18)0.0530 (18)0.0792 (19)−0.0029 (14)−0.0015 (17)0.0058 (15)
C150.098 (3)0.087 (3)0.102 (3)0.030 (2)0.018 (2)0.046 (2)
C160.207 (6)0.156 (5)0.150 (5)0.099 (5)0.068 (5)0.061 (4)
C170.125 (4)0.053 (2)0.213 (5)−0.012 (2)−0.034 (3)−0.014 (3)
C180.075 (2)0.0528 (18)0.0624 (19)0.0052 (17)−0.0019 (19)0.0097 (16)
C190.132 (3)0.054 (2)0.123 (3)−0.0241 (19)−0.047 (3)0.0172 (19)
C200.0569 (18)0.0573 (17)0.0462 (14)−0.0039 (14)−0.0069 (13)−0.0065 (13)
O1—C31.201 (3)C9—C101.541 (3)
O2—C181.196 (3)C9—H90.9800
O3—C181.354 (3)C10—C201.534 (3)
O3—C61.457 (3)C11—C121.523 (3)
O4—C71.429 (3)C11—H11A0.9700
O4—C81.461 (3)C11—H11B0.9700
C1—C101.519 (3)C12—C131.532 (4)
C1—C21.534 (4)C12—H12A0.9700
C1—H1A0.9700C12—H12B0.9700
C1—H1B0.9700C13—C151.490 (4)
C2—C31.474 (4)C13—C171.533 (4)
C2—H2A0.9700C13—C141.546 (4)
C2—H2B0.9700C14—H14A0.9700
C3—C41.526 (4)C14—H14B0.9700
C4—C181.514 (4)C15—C161.263 (6)
C4—C51.523 (3)C15—H150.9300
C4—C191.534 (4)C16—H16A0.91 (2)
C5—C61.516 (4)C16—H16B0.97 (2)
C5—C101.536 (3)C17—H17A0.9600
C5—H50.9800C17—H17B0.9600
C6—C71.499 (3)C17—H17C0.9600
C6—H60.9800C19—H19A0.9600
C7—C81.458 (3)C19—H19B0.9600
C7—H70.9800C19—H19C0.9600
C8—C141.498 (3)C20—H20A0.9600
C8—C91.521 (3)C20—H20B0.9600
C9—C111.533 (3)C20—H20C0.9600
C18—O3—C6110.1 (2)C20—C10—C5113.6 (2)
C7—O4—C860.57 (15)C1—C10—C9111.4 (2)
C10—C1—C2111.3 (2)C20—C10—C9110.3 (2)
C10—C1—H1A109.4C5—C10—C9105.44 (18)
C2—C1—H1A109.4C12—C11—C9108.9 (2)
C10—C1—H1B109.4C12—C11—H11A109.9
C2—C1—H1B109.4C9—C11—H11A109.9
H1A—C1—H1B108.0C12—C11—H11B109.9
C3—C2—C1118.0 (3)C9—C11—H11B109.9
C3—C2—H2A107.8H11A—C11—H11B108.3
C1—C2—H2A107.8C11—C12—C13113.0 (2)
C3—C2—H2B107.8C11—C12—H12A109.0
C1—C2—H2B107.8C13—C12—H12A109.0
H2A—C2—H2B107.1C11—C12—H12B109.0
O1—C3—C2119.6 (3)C13—C12—H12B109.0
O1—C3—C4119.7 (3)H12A—C12—H12B107.8
C2—C3—C4120.6 (3)C15—C13—C12108.3 (3)
C18—C4—C5102.3 (2)C15—C13—C17112.9 (3)
C18—C4—C3111.8 (2)C12—C13—C17109.0 (3)
C5—C4—C3114.9 (2)C15—C13—C14108.6 (2)
C18—C4—C19107.7 (3)C12—C13—C14109.8 (2)
C5—C4—C19112.9 (2)C17—C13—C14108.2 (3)
C3—C4—C19107.1 (3)C8—C14—C13114.2 (2)
C6—C5—C4102.9 (2)C8—C14—H14A108.7
C6—C5—C10113.2 (2)C13—C14—H14A108.7
C4—C5—C10114.10 (19)C8—C14—H14B108.7
C6—C5—H5108.8C13—C14—H14B108.7
C4—C5—H5108.8H14A—C14—H14B107.6
C10—C5—H5108.8C16—C15—C13129.5 (5)
O3—C6—C7108.9 (2)C16—C15—H15115.2
O3—C6—C5104.77 (18)C13—C15—H15115.2
C7—C6—C5116.4 (2)C15—C16—H16A118 (2)
O3—C6—H6108.9C15—C16—H16B111 (2)
C7—C6—H6108.9H16A—C16—H16B131 (3)
C5—C6—H6108.9C13—C17—H17A109.5
O4—C7—C860.81 (15)C13—C17—H17B109.5
O4—C7—C6113.7 (2)H17A—C17—H17B109.5
C8—C7—C6120.3 (2)C13—C17—H17C109.5
O4—C7—H7116.7H17A—C17—H17C109.5
C8—C7—H7116.7H17B—C17—H17C109.5
C6—C7—H7116.7O2—C18—O3120.1 (3)
C7—C8—O458.63 (14)O2—C18—C4129.7 (3)
C7—C8—C14119.9 (2)O3—C18—C4110.2 (3)
O4—C8—C14114.8 (2)C4—C19—H19A109.5
C7—C8—C9118.7 (2)C4—C19—H19B109.5
O4—C8—C9115.74 (19)H19A—C19—H19B109.5
C14—C8—C9116.1 (2)C4—C19—H19C109.5
C8—C9—C11110.2 (2)H19A—C19—H19C109.5
C8—C9—C10109.59 (19)H19B—C19—H19C109.5
C11—C9—C10116.4 (2)C10—C20—H20A109.5
C8—C9—H9106.7C10—C20—H20B109.5
C11—C9—H9106.7H20A—C20—H20B109.5
C10—C9—H9106.7C10—C20—H20C109.5
C1—C10—C20109.82 (19)H20A—C20—H20C109.5
C1—C10—C5106.3 (2)H20B—C20—H20C109.5
C10—C1—C2—C3−30.0 (4)C2—C1—C10—C20−60.7 (3)
C1—C2—C3—O1174.5 (3)C2—C1—C10—C562.5 (3)
C1—C2—C3—C4−6.6 (4)C2—C1—C10—C9176.9 (2)
O1—C3—C4—C18−57.0 (4)C6—C5—C10—C1−179.6 (2)
C2—C3—C4—C18124.1 (3)C4—C5—C10—C1−62.4 (3)
O1—C3—C4—C5−173.1 (3)C6—C5—C10—C20−58.8 (3)
C2—C3—C4—C58.0 (4)C4—C5—C10—C2058.5 (3)
O1—C3—C4—C1960.7 (4)C6—C5—C10—C962.1 (3)
C2—C3—C4—C19−118.2 (3)C4—C5—C10—C9179.3 (2)
C18—C4—C5—C628.8 (2)C8—C9—C10—C1−179.5 (2)
C3—C4—C5—C6150.2 (2)C11—C9—C10—C154.6 (3)
C19—C4—C5—C6−86.7 (3)C8—C9—C10—C2058.3 (2)
C18—C4—C5—C10−94.2 (3)C11—C9—C10—C20−67.5 (3)
C3—C4—C5—C1027.2 (3)C8—C9—C10—C5−64.7 (2)
C19—C4—C5—C10150.3 (3)C11—C9—C10—C5169.5 (2)
C18—O3—C6—C7145.2 (2)C8—C9—C11—C1247.6 (3)
C18—O3—C6—C520.1 (3)C10—C9—C11—C12173.2 (2)
C4—C5—C6—O3−30.2 (2)C9—C11—C12—C13−67.5 (3)
C10—C5—C6—O393.4 (2)C11—C12—C13—C15142.6 (3)
C4—C5—C6—C7−150.5 (2)C11—C12—C13—C17−94.1 (3)
C10—C5—C6—C7−26.9 (3)C11—C12—C13—C1424.2 (3)
C8—O4—C7—C6112.7 (2)C7—C8—C14—C13153.1 (2)
O3—C6—C7—O4166.57 (18)O4—C8—C14—C1386.4 (3)
C5—C6—C7—O4−75.4 (3)C9—C8—C14—C13−52.9 (3)
O3—C6—C7—C8−124.6 (2)C15—C13—C14—C8−84.6 (3)
C5—C6—C7—C8−6.5 (3)C12—C13—C14—C833.6 (3)
C6—C7—C8—O4−101.9 (3)C17—C13—C14—C8152.5 (3)
O4—C7—C8—C14−102.5 (3)C12—C13—C15—C16115.8 (5)
C6—C7—C8—C14155.6 (2)C17—C13—C15—C16−5.0 (6)
O4—C7—C8—C9104.2 (2)C14—C13—C15—C16−125.0 (5)
C6—C7—C8—C92.3 (3)C6—O3—C18—O2176.6 (3)
C7—O4—C8—C14111.2 (2)C6—O3—C18—C4−1.0 (3)
C7—O4—C8—C9−109.3 (2)C5—C4—C18—O2164.5 (3)
C7—C8—C9—C11163.7 (2)C3—C4—C18—O241.0 (4)
O4—C8—C9—C11−129.6 (2)C19—C4—C18—O2−76.3 (4)
C14—C8—C9—C119.4 (3)C5—C4—C18—O3−18.1 (3)
C7—C8—C9—C1034.3 (3)C3—C4—C18—O3−141.6 (2)
O4—C8—C9—C10101.1 (2)C19—C4—C18—O3101.0 (3)
C14—C8—C9—C10−119.9 (2)
D—H···AD—HH···AD···AD—H···A
C2—H2B···O2i0.972.583.356 (5)137
C7—H7···O4ii0.982.583.164 (4)118
C11—H11A···O1iii0.972.553.420 (5)149
C14—H14B···O1iv0.972.523.486 (5)178
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2B⋯O2i0.972.583.356 (5)137
C7—H7⋯O4ii0.982.583.164 (4)118
C11—H11A⋯O1iii0.972.553.420 (5)149
C14—H14B⋯O1iv0.972.523.486 (5)178

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  Total synthesis of (+/-)-momilactone A.

Authors:  Julie Germain; Pierre Deslongchamps
Journal:  J Org Chem       Date:  2002-07-26       Impact factor: 4.354

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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