Literature DB >> 21202357

3,6-Dichloro-N-(4,6-dichloro-pyrimidin-2-yl)picolinamide.

Shan-Shan Zhang, Yue Zhuang, Xian-Hong Yin, Kai Zhao, Cui-Wu Lin.   

Abstract

In the title compound, C(10)H(4)Cl(4)N(4)O, the pyridine and pyrimidine rings are nearly perpendicular to each other, the dihedral angle between them being 86.60 (10)°. In the crystal structure, the N and O atoms in the amide group are involved in inter-molecular hydrogen bonds, forming a one-dimensional chain along the c axis.

Entities:  

Year:  2008        PMID: 21202357      PMCID: PMC2961186          DOI: 10.1107/S1600536808010325

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Liu et al. (2005 ▶); Śladowska et al. (1999 ▶).

Experimental

Crystal data

C10H4Cl4N4O M = 337.97 Monoclinic, a = 10.9313 (13) Å b = 13.3682 (14) Å c = 9.3846 (10) Å β = 112.576 (1)° V = 1266.3 (2) Å3 Z = 4 Mo Kα radiation μ = 0.93 mm−1 T = 293 (2) K 0.48 × 0.43 × 0.40 mm

Data collection

Bruker SMART 1000 diffractometer Absorption correction: multi-scan (; Sheldrick, 1996 ▶) T min = 0.648, T max = 0.690 15165 measured reflections 2494 independent reflections 2132 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.096 S = 1.02 2494 reflections 172 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808010325/is2279sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808010325/is2279Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H4Cl4N4OF000 = 672
Mr = 337.97Dx = 1.773 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5203 reflections
a = 10.9313 (13) Åθ = 2.5–27.9º
b = 13.3682 (14) ŵ = 0.93 mm1
c = 9.3846 (10) ÅT = 293 (2) K
β = 112.576 (1)ºBlock, colorless
V = 1266.3 (2) Å30.48 × 0.43 × 0.40 mm
Z = 4
Bruker SMART 1000 diffractometer2494 independent reflections
Radiation source: fine-focus sealed tube2132 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.032
T = 293(2) Kθmax = 26.0º
φ and ω scansθmin = 2.0º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.648, Tmax = 0.690k = −14→16
15165 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.096  w = 1/[σ2(Fo2) + (0.054P)2 + 0.512P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
2494 reflectionsΔρmax = 0.34 e Å3
172 parametersΔρmin = −0.30 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.35795 (6)0.27703 (5)−0.13818 (7)0.05603 (19)
Cl20.62475 (7)0.54097 (5)0.43365 (8)0.0654 (2)
Cl31.09988 (5)0.21157 (5)−0.02538 (7)0.05207 (18)
Cl41.02903 (6)−0.06103 (4)0.35461 (7)0.05590 (19)
N10.74081 (16)0.23149 (13)0.16663 (19)0.0373 (4)
H10.72570.22610.24970.045*
N20.62326 (16)0.40893 (13)0.23044 (19)0.0391 (4)
N30.87749 (16)0.09425 (12)0.24523 (19)0.0365 (4)
N40.90814 (16)0.21391 (12)0.07244 (19)0.0345 (4)
O10.65761 (15)0.30109 (12)−0.07433 (17)0.0477 (4)
C10.65957 (19)0.29263 (15)0.0547 (2)0.0343 (4)
C20.56552 (19)0.35255 (15)0.1045 (2)0.0337 (4)
C30.4300 (2)0.35264 (16)0.0218 (2)0.0377 (4)
C40.3507 (2)0.41321 (17)0.0706 (3)0.0454 (5)
H40.25920.41370.01780.054*
C50.4096 (2)0.47242 (16)0.1984 (3)0.0453 (5)
H50.35960.51480.23350.054*
C60.5450 (2)0.46693 (16)0.2728 (2)0.0409 (5)
C70.84622 (18)0.17692 (14)0.1588 (2)0.0326 (4)
C81.01267 (19)0.16221 (16)0.0782 (2)0.0356 (4)
C91.0576 (2)0.07605 (16)0.1624 (2)0.0410 (5)
H91.13170.04120.16400.049*
C100.9829 (2)0.04607 (15)0.2440 (2)0.0372 (4)
U11U22U33U12U13U23
Cl10.0484 (3)0.0739 (4)0.0436 (3)−0.0043 (3)0.0151 (3)−0.0118 (3)
Cl20.0771 (4)0.0715 (4)0.0639 (4)−0.0244 (3)0.0452 (4)−0.0292 (3)
Cl30.0420 (3)0.0729 (4)0.0502 (3)0.0091 (2)0.0275 (3)0.0117 (3)
Cl40.0705 (4)0.0384 (3)0.0589 (4)0.0150 (3)0.0248 (3)0.0111 (2)
N10.0406 (9)0.0437 (10)0.0356 (9)0.0093 (7)0.0234 (8)0.0071 (7)
N20.0414 (9)0.0450 (10)0.0380 (9)−0.0001 (8)0.0231 (8)−0.0001 (8)
N30.0422 (9)0.0331 (9)0.0357 (9)0.0000 (7)0.0166 (7)0.0004 (7)
N40.0349 (8)0.0366 (9)0.0352 (9)0.0011 (7)0.0170 (7)−0.0012 (7)
O10.0500 (9)0.0659 (10)0.0353 (8)0.0160 (7)0.0253 (7)0.0077 (7)
C10.0358 (10)0.0388 (11)0.0343 (10)0.0023 (8)0.0200 (8)0.0010 (8)
C20.0375 (10)0.0354 (10)0.0331 (10)0.0065 (8)0.0189 (8)0.0065 (8)
C30.0408 (10)0.0422 (11)0.0321 (10)0.0047 (9)0.0162 (9)0.0052 (8)
C40.0371 (11)0.0534 (13)0.0467 (12)0.0141 (9)0.0173 (9)0.0106 (10)
C50.0550 (13)0.0412 (12)0.0508 (13)0.0137 (10)0.0327 (11)0.0063 (10)
C60.0515 (12)0.0377 (11)0.0434 (11)−0.0025 (9)0.0292 (10)0.0000 (9)
C70.0335 (9)0.0336 (10)0.0319 (9)0.0006 (8)0.0139 (8)−0.0026 (8)
C80.0329 (9)0.0437 (11)0.0310 (9)−0.0007 (8)0.0132 (8)−0.0039 (8)
C90.0372 (11)0.0425 (12)0.0431 (11)0.0085 (9)0.0153 (9)−0.0033 (9)
C100.0421 (11)0.0321 (10)0.0331 (10)0.0042 (8)0.0098 (9)−0.0023 (8)
Cl1—C31.729 (2)N4—C71.335 (2)
Cl2—C61.734 (2)O1—C11.208 (2)
Cl3—C81.732 (2)C1—C21.512 (3)
Cl4—C101.726 (2)C2—C31.383 (3)
N1—C11.358 (3)C3—C41.387 (3)
N1—C71.389 (2)C4—C51.373 (3)
N1—H10.8600C4—H40.9300
N2—C61.323 (3)C5—C61.375 (3)
N2—C21.338 (3)C5—H50.9300
N3—C101.324 (3)C8—C91.376 (3)
N3—C71.335 (3)C9—C101.376 (3)
N4—C81.319 (3)C9—H90.9300
C1—N1—C7125.77 (15)C4—C5—C6117.70 (19)
C1—N1—H1117.1C4—C5—H5121.1
C7—N1—H1117.1C6—C5—H5121.1
C6—N2—C2117.08 (17)N2—C6—C5124.9 (2)
C10—N3—C7114.73 (16)N2—C6—Cl2115.41 (16)
C8—N4—C7114.49 (17)C5—C6—Cl2119.64 (16)
O1—C1—N1125.91 (17)N4—C7—N3127.17 (17)
O1—C1—C2120.51 (18)N4—C7—N1117.50 (17)
N1—C1—C2113.57 (15)N3—C7—N1115.27 (16)
N2—C2—C3122.36 (17)N4—C8—C9125.06 (18)
N2—C2—C1115.17 (17)N4—C8—Cl3115.62 (15)
C3—C2—C1122.40 (18)C9—C8—Cl3119.29 (15)
C2—C3—C4119.07 (19)C10—C9—C8113.97 (18)
C2—C3—Cl1121.29 (15)C10—C9—H9123.0
C4—C3—Cl1119.62 (17)C8—C9—H9123.0
C5—C4—C3118.8 (2)N3—C10—C9124.56 (19)
C5—C4—H4120.6N3—C10—Cl4116.92 (16)
C3—C4—H4120.6C9—C10—Cl4118.52 (16)
C7—N1—C1—O18.1 (3)C4—C5—C6—N20.1 (3)
C7—N1—C1—C2−172.25 (18)C4—C5—C6—Cl2179.38 (17)
C6—N2—C2—C3−1.0 (3)C8—N4—C7—N3−1.4 (3)
C6—N2—C2—C1176.22 (17)C8—N4—C7—N1175.62 (17)
O1—C1—C2—N2−124.1 (2)C10—N3—C7—N40.9 (3)
N1—C1—C2—N256.2 (2)C10—N3—C7—N1−176.17 (17)
O1—C1—C2—C353.0 (3)C1—N1—C7—N429.0 (3)
N1—C1—C2—C3−126.6 (2)C1—N1—C7—N3−153.63 (19)
N2—C2—C3—C40.0 (3)C7—N4—C8—C90.9 (3)
C1—C2—C3—C4−176.93 (18)C7—N4—C8—Cl3−177.03 (14)
N2—C2—C3—Cl1−178.64 (15)N4—C8—C9—C10−0.1 (3)
C1—C2—C3—Cl14.4 (3)Cl3—C8—C9—C10177.81 (15)
C2—C3—C4—C51.0 (3)C7—N3—C10—C90.1 (3)
Cl1—C3—C4—C5179.68 (17)C7—N3—C10—Cl4179.59 (14)
C3—C4—C5—C6−1.0 (3)C8—C9—C10—N3−0.5 (3)
C2—N2—C6—C50.9 (3)C8—C9—C10—Cl4−179.95 (15)
C2—N2—C6—Cl2−178.40 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.092.937 (2)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.862.092.937 (2)170

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Investigations on the synthesis and pharmacological properties of amides of 7-methyl-3-phenyl-1-[2-hydroxy-3-(4-phenyl-1-piperazinyl)propyl]-2,4- dioxo-1,2,3,4-tetrahydropyrido[2,3-d]-pyrimidine-5-carboxylic acid.

Authors:  H Sladowska; M Sieklucka-Dziuba; G Rajtar; M Sadowski; Z Kleinrok
Journal:  Farmaco       Date:  1999 Nov-Dec
  2 in total

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