| Literature DB >> 21202357 |
Shan-Shan Zhang, Yue Zhuang, Xian-Hong Yin, Kai Zhao, Cui-Wu Lin.
Abstract
In the title compound, C(10)H(4)Cl(4)N(4)O, the pyridine and pyrimidine rings are nearly perpendicular to each other, the dihedral angle between them being 86.60 (10)°. In the crystal structure, the N and O atoms in the amide group are involved in inter-molecular hydrogen bonds, forming a one-dimensional chain along the c axis.Entities:
Year: 2008 PMID: 21202357 PMCID: PMC2961186 DOI: 10.1107/S1600536808010325
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H4Cl4N4O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5203 reflections |
| θ = 2.5–27.9º | |
| µ = 0.93 mm−1 | |
| β = 112.576 (1)º | Block, colorless |
| 0.48 × 0.43 × 0.40 mm | |
| Bruker SMART 1000 diffractometer | 2494 independent reflections |
| Radiation source: fine-focus sealed tube | 2132 reflections with |
| Monochromator: graphite | |
| θmax = 26.0º | |
| φ and ω scans | θmin = 2.0º |
| Absorption correction: multi-scan( | |
| 15165 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 2494 reflections | Δρmax = 0.34 e Å−3 |
| 172 parameters | Δρmin = −0.30 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.35795 (6) | 0.27703 (5) | −0.13818 (7) | 0.05603 (19) | |
| Cl2 | 0.62475 (7) | 0.54097 (5) | 0.43365 (8) | 0.0654 (2) | |
| Cl3 | 1.09988 (5) | 0.21157 (5) | −0.02538 (7) | 0.05207 (18) | |
| Cl4 | 1.02903 (6) | −0.06103 (4) | 0.35461 (7) | 0.05590 (19) | |
| N1 | 0.74081 (16) | 0.23149 (13) | 0.16663 (19) | 0.0373 (4) | |
| H1 | 0.7257 | 0.2261 | 0.2497 | 0.045* | |
| N2 | 0.62326 (16) | 0.40893 (13) | 0.23044 (19) | 0.0391 (4) | |
| N3 | 0.87749 (16) | 0.09425 (12) | 0.24523 (19) | 0.0365 (4) | |
| N4 | 0.90814 (16) | 0.21391 (12) | 0.07244 (19) | 0.0345 (4) | |
| O1 | 0.65761 (15) | 0.30109 (12) | −0.07433 (17) | 0.0477 (4) | |
| C1 | 0.65957 (19) | 0.29263 (15) | 0.0547 (2) | 0.0343 (4) | |
| C2 | 0.56552 (19) | 0.35255 (15) | 0.1045 (2) | 0.0337 (4) | |
| C3 | 0.4300 (2) | 0.35264 (16) | 0.0218 (2) | 0.0377 (4) | |
| C4 | 0.3507 (2) | 0.41321 (17) | 0.0706 (3) | 0.0454 (5) | |
| H4 | 0.2592 | 0.4137 | 0.0178 | 0.054* | |
| C5 | 0.4096 (2) | 0.47242 (16) | 0.1984 (3) | 0.0453 (5) | |
| H5 | 0.3596 | 0.5148 | 0.2335 | 0.054* | |
| C6 | 0.5450 (2) | 0.46693 (16) | 0.2728 (2) | 0.0409 (5) | |
| C7 | 0.84622 (18) | 0.17692 (14) | 0.1588 (2) | 0.0326 (4) | |
| C8 | 1.01267 (19) | 0.16221 (16) | 0.0782 (2) | 0.0356 (4) | |
| C9 | 1.0576 (2) | 0.07605 (16) | 0.1624 (2) | 0.0410 (5) | |
| H9 | 1.1317 | 0.0412 | 0.1640 | 0.049* | |
| C10 | 0.9829 (2) | 0.04607 (15) | 0.2440 (2) | 0.0372 (4) |
| Cl1 | 0.0484 (3) | 0.0739 (4) | 0.0436 (3) | −0.0043 (3) | 0.0151 (3) | −0.0118 (3) |
| Cl2 | 0.0771 (4) | 0.0715 (4) | 0.0639 (4) | −0.0244 (3) | 0.0452 (4) | −0.0292 (3) |
| Cl3 | 0.0420 (3) | 0.0729 (4) | 0.0502 (3) | 0.0091 (2) | 0.0275 (3) | 0.0117 (3) |
| Cl4 | 0.0705 (4) | 0.0384 (3) | 0.0589 (4) | 0.0150 (3) | 0.0248 (3) | 0.0111 (2) |
| N1 | 0.0406 (9) | 0.0437 (10) | 0.0356 (9) | 0.0093 (7) | 0.0234 (8) | 0.0071 (7) |
| N2 | 0.0414 (9) | 0.0450 (10) | 0.0380 (9) | −0.0001 (8) | 0.0231 (8) | −0.0001 (8) |
| N3 | 0.0422 (9) | 0.0331 (9) | 0.0357 (9) | 0.0000 (7) | 0.0166 (7) | 0.0004 (7) |
| N4 | 0.0349 (8) | 0.0366 (9) | 0.0352 (9) | 0.0011 (7) | 0.0170 (7) | −0.0012 (7) |
| O1 | 0.0500 (9) | 0.0659 (10) | 0.0353 (8) | 0.0160 (7) | 0.0253 (7) | 0.0077 (7) |
| C1 | 0.0358 (10) | 0.0388 (11) | 0.0343 (10) | 0.0023 (8) | 0.0200 (8) | 0.0010 (8) |
| C2 | 0.0375 (10) | 0.0354 (10) | 0.0331 (10) | 0.0065 (8) | 0.0189 (8) | 0.0065 (8) |
| C3 | 0.0408 (10) | 0.0422 (11) | 0.0321 (10) | 0.0047 (9) | 0.0162 (9) | 0.0052 (8) |
| C4 | 0.0371 (11) | 0.0534 (13) | 0.0467 (12) | 0.0141 (9) | 0.0173 (9) | 0.0106 (10) |
| C5 | 0.0550 (13) | 0.0412 (12) | 0.0508 (13) | 0.0137 (10) | 0.0327 (11) | 0.0063 (10) |
| C6 | 0.0515 (12) | 0.0377 (11) | 0.0434 (11) | −0.0025 (9) | 0.0292 (10) | 0.0000 (9) |
| C7 | 0.0335 (9) | 0.0336 (10) | 0.0319 (9) | 0.0006 (8) | 0.0139 (8) | −0.0026 (8) |
| C8 | 0.0329 (9) | 0.0437 (11) | 0.0310 (9) | −0.0007 (8) | 0.0132 (8) | −0.0039 (8) |
| C9 | 0.0372 (11) | 0.0425 (12) | 0.0431 (11) | 0.0085 (9) | 0.0153 (9) | −0.0033 (9) |
| C10 | 0.0421 (11) | 0.0321 (10) | 0.0331 (10) | 0.0042 (8) | 0.0098 (9) | −0.0023 (8) |
| Cl1—C3 | 1.729 (2) | N4—C7 | 1.335 (2) |
| Cl2—C6 | 1.734 (2) | O1—C1 | 1.208 (2) |
| Cl3—C8 | 1.732 (2) | C1—C2 | 1.512 (3) |
| Cl4—C10 | 1.726 (2) | C2—C3 | 1.383 (3) |
| N1—C1 | 1.358 (3) | C3—C4 | 1.387 (3) |
| N1—C7 | 1.389 (2) | C4—C5 | 1.373 (3) |
| N1—H1 | 0.8600 | C4—H4 | 0.9300 |
| N2—C6 | 1.323 (3) | C5—C6 | 1.375 (3) |
| N2—C2 | 1.338 (3) | C5—H5 | 0.9300 |
| N3—C10 | 1.324 (3) | C8—C9 | 1.376 (3) |
| N3—C7 | 1.335 (3) | C9—C10 | 1.376 (3) |
| N4—C8 | 1.319 (3) | C9—H9 | 0.9300 |
| C1—N1—C7 | 125.77 (15) | C4—C5—C6 | 117.70 (19) |
| C1—N1—H1 | 117.1 | C4—C5—H5 | 121.1 |
| C7—N1—H1 | 117.1 | C6—C5—H5 | 121.1 |
| C6—N2—C2 | 117.08 (17) | N2—C6—C5 | 124.9 (2) |
| C10—N3—C7 | 114.73 (16) | N2—C6—Cl2 | 115.41 (16) |
| C8—N4—C7 | 114.49 (17) | C5—C6—Cl2 | 119.64 (16) |
| O1—C1—N1 | 125.91 (17) | N4—C7—N3 | 127.17 (17) |
| O1—C1—C2 | 120.51 (18) | N4—C7—N1 | 117.50 (17) |
| N1—C1—C2 | 113.57 (15) | N3—C7—N1 | 115.27 (16) |
| N2—C2—C3 | 122.36 (17) | N4—C8—C9 | 125.06 (18) |
| N2—C2—C1 | 115.17 (17) | N4—C8—Cl3 | 115.62 (15) |
| C3—C2—C1 | 122.40 (18) | C9—C8—Cl3 | 119.29 (15) |
| C2—C3—C4 | 119.07 (19) | C10—C9—C8 | 113.97 (18) |
| C2—C3—Cl1 | 121.29 (15) | C10—C9—H9 | 123.0 |
| C4—C3—Cl1 | 119.62 (17) | C8—C9—H9 | 123.0 |
| C5—C4—C3 | 118.8 (2) | N3—C10—C9 | 124.56 (19) |
| C5—C4—H4 | 120.6 | N3—C10—Cl4 | 116.92 (16) |
| C3—C4—H4 | 120.6 | C9—C10—Cl4 | 118.52 (16) |
| C7—N1—C1—O1 | 8.1 (3) | C4—C5—C6—N2 | 0.1 (3) |
| C7—N1—C1—C2 | −172.25 (18) | C4—C5—C6—Cl2 | 179.38 (17) |
| C6—N2—C2—C3 | −1.0 (3) | C8—N4—C7—N3 | −1.4 (3) |
| C6—N2—C2—C1 | 176.22 (17) | C8—N4—C7—N1 | 175.62 (17) |
| O1—C1—C2—N2 | −124.1 (2) | C10—N3—C7—N4 | 0.9 (3) |
| N1—C1—C2—N2 | 56.2 (2) | C10—N3—C7—N1 | −176.17 (17) |
| O1—C1—C2—C3 | 53.0 (3) | C1—N1—C7—N4 | 29.0 (3) |
| N1—C1—C2—C3 | −126.6 (2) | C1—N1—C7—N3 | −153.63 (19) |
| N2—C2—C3—C4 | 0.0 (3) | C7—N4—C8—C9 | 0.9 (3) |
| C1—C2—C3—C4 | −176.93 (18) | C7—N4—C8—Cl3 | −177.03 (14) |
| N2—C2—C3—Cl1 | −178.64 (15) | N4—C8—C9—C10 | −0.1 (3) |
| C1—C2—C3—Cl1 | 4.4 (3) | Cl3—C8—C9—C10 | 177.81 (15) |
| C2—C3—C4—C5 | 1.0 (3) | C7—N3—C10—C9 | 0.1 (3) |
| Cl1—C3—C4—C5 | 179.68 (17) | C7—N3—C10—Cl4 | 179.59 (14) |
| C3—C4—C5—C6 | −1.0 (3) | C8—C9—C10—N3 | −0.5 (3) |
| C2—N2—C6—C5 | 0.9 (3) | C8—C9—C10—Cl4 | −179.95 (15) |
| C2—N2—C6—Cl2 | −178.40 (14) |
| H··· | ||||
| N1—H1···O1i | 0.86 | 2.09 | 2.937 (2) | 170 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1i | 0.86 | 2.09 | 2.937 (2) | 170 |
Symmetry code: (i) .