Literature DB >> 21202327

4-Anilino-1-benzyl-piperidine-4-carbo-nitrile.

Kiran K Allam1, Frank R Fronczek, M Graça H Vicente.   

Abstract

The title mol-ecule, C(19)H(21)N(3), an important precursor in the synthesis of porphyrin-fentanyl conjugates, has its piperidine ring in the chair conformation, with endocyclic torsion-angle magnitudes in the range 53.26 (8)-60.63 (9)°. The C N group is axial, while the CH(2)Ph and NHPh groups are equatorial. The NH group does not engage in strong hydrogen bonding, but forms an inter-molecular N-H⋯N inter-action.

Entities:  

Year:  2008        PMID: 21202327      PMCID: PMC2961292          DOI: 10.1107/S1600536808009136

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature, see: Barth et al. (2005 ▶); Deguchi et al. (2004 ▶); Henriksen et al. (2005 ▶); Terasaki et al. (2003 ▶); Vicente, (2001 ▶). For a related structure, see: Brine et al. (1994 ▶).

Experimental

Crystal data

C19H21N3 M = 291.39 Monoclinic, a = 9.7718 (13) Å b = 10.0415 (14) Å c = 15.9519 (15) Å β = 94.532 (9)° V = 1560.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 90 K 0.37 × 0.25 × 0.23 mm

Data collection

Nonius KappaCCD diffractometer with an Oxford Cryosystems Cryostream cooler Absorption correction: none 24180 measured reflections 6842 independent reflections 5189 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.124 S = 1.03 6842 reflections 203 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.49 e Å−3 Δρmin = −0.27 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808009136/om2222sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808009136/om2222Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H21N3F000 = 624
Mr = 291.39Dx = 1.240 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5228 reflections
a = 9.7718 (13) Åθ = 2.5–35.0º
b = 10.0415 (14) ŵ = 0.07 mm1
c = 15.9519 (15) ÅT = 90 K
β = 94.532 (9)ºFragment, colorless
V = 1560.4 (3) Å30.37 × 0.25 × 0.23 mm
Z = 4
Nonius KappaCCD diffractometer with an Oxford Cryosystems Cryostream cooler5189 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.025
Monochromator: graphiteθmax = 35.0º
T = 90 Kθmin = 2.5º
ω scans with κ offsetsh = −15→15
Absorption correction: nonek = −12→16
24180 measured reflectionsl = −25→25
6842 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.044  w = 1/[σ2(Fo2) + (0.0605P)2 + 0.3181P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.124(Δ/σ)max = 0.001
S = 1.04Δρmax = 0.49 e Å3
6842 reflectionsΔρmin = −0.27 e Å3
203 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0081 (18)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.43216 (7)0.37118 (8)0.73394 (4)0.01247 (13)
N20.68233 (8)0.66885 (8)0.63306 (4)0.01659 (14)
H2N0.6447 (13)0.7350 (14)0.6548 (8)0.020*
N30.86941 (8)0.40176 (9)0.70892 (5)0.01981 (15)
C10.53227 (8)0.44146 (9)0.79097 (4)0.01280 (14)
H1A0.61240.38300.80500.015*
H1B0.49030.46280.84380.015*
C20.57970 (8)0.56932 (9)0.75123 (5)0.01372 (14)
H2A0.64750.61440.79100.016*
H2B0.50020.62980.74030.016*
C30.64507 (8)0.54198 (8)0.66810 (5)0.01146 (13)
C40.54095 (8)0.45965 (9)0.61165 (5)0.01336 (14)
H4A0.46020.51580.59470.016*
H4B0.58370.43280.56000.016*
C50.49370 (8)0.33556 (9)0.65622 (5)0.01364 (15)
H5A0.42560.28690.61850.016*
H5B0.57310.27590.66950.016*
C60.38149 (8)0.25204 (9)0.77503 (5)0.01443 (14)
H6A0.46040.19820.79830.017*
H6B0.32730.19710.73290.017*
C70.29300 (8)0.28909 (9)0.84504 (5)0.01256 (14)
C80.17137 (8)0.35979 (9)0.82626 (5)0.01463 (15)
H80.14580.38520.76980.018*
C90.08730 (9)0.39339 (9)0.88947 (5)0.01645 (16)
H90.00470.44140.87600.020*
C100.12395 (9)0.35679 (10)0.97276 (5)0.01752 (16)
H100.06550.37771.01570.021*
C110.24640 (10)0.28969 (9)0.99214 (5)0.01758 (16)
H110.27300.26651.04880.021*
C120.33101 (9)0.25597 (9)0.92851 (5)0.01539 (15)
H120.41490.21020.94230.018*
C130.74564 (8)0.68867 (8)0.55887 (5)0.01178 (14)
C140.80105 (8)0.58537 (8)0.51281 (5)0.01315 (14)
H140.79350.49570.53080.016*
C150.86740 (8)0.61438 (9)0.44045 (5)0.01405 (14)
H150.90370.54370.40940.017*
C160.88109 (8)0.74472 (9)0.41323 (5)0.01466 (15)
H160.92730.76360.36440.018*
C170.82588 (8)0.84752 (9)0.45882 (5)0.01452 (15)
H170.83440.93710.44080.017*
C180.75859 (8)0.82007 (9)0.53034 (5)0.01298 (14)
H180.72080.89110.56040.016*
C190.77255 (8)0.46283 (9)0.68964 (5)0.01285 (14)
U11U22U33U12U13U23
N10.0132 (3)0.0145 (3)0.0100 (2)−0.0015 (2)0.0032 (2)−0.0008 (2)
N20.0258 (4)0.0095 (3)0.0161 (3)0.0039 (3)0.0115 (3)0.0025 (2)
N30.0166 (3)0.0209 (4)0.0217 (3)0.0027 (3)0.0001 (2)0.0017 (3)
C10.0158 (3)0.0133 (3)0.0096 (3)−0.0012 (3)0.0027 (2)0.0001 (3)
C20.0178 (3)0.0127 (3)0.0113 (3)0.0002 (3)0.0056 (2)−0.0002 (3)
C30.0131 (3)0.0106 (3)0.0111 (3)0.0017 (3)0.0034 (2)0.0015 (2)
C40.0125 (3)0.0182 (4)0.0095 (3)0.0011 (3)0.0016 (2)0.0012 (3)
C50.0137 (3)0.0168 (4)0.0106 (3)−0.0015 (3)0.0024 (2)−0.0024 (3)
C60.0155 (3)0.0131 (3)0.0152 (3)−0.0009 (3)0.0050 (2)−0.0007 (3)
C70.0133 (3)0.0121 (3)0.0126 (3)−0.0022 (3)0.0032 (2)−0.0003 (3)
C80.0135 (3)0.0170 (4)0.0134 (3)−0.0017 (3)0.0016 (2)−0.0013 (3)
C90.0132 (3)0.0178 (4)0.0187 (3)−0.0017 (3)0.0036 (3)−0.0033 (3)
C100.0200 (4)0.0168 (4)0.0167 (3)−0.0048 (3)0.0080 (3)−0.0025 (3)
C110.0250 (4)0.0146 (4)0.0136 (3)−0.0030 (3)0.0046 (3)0.0016 (3)
C120.0183 (3)0.0130 (4)0.0151 (3)−0.0003 (3)0.0024 (3)0.0021 (3)
C130.0125 (3)0.0117 (3)0.0114 (3)0.0011 (3)0.0027 (2)0.0014 (2)
C140.0157 (3)0.0109 (3)0.0134 (3)0.0010 (3)0.0042 (2)0.0012 (3)
C150.0148 (3)0.0150 (4)0.0128 (3)0.0007 (3)0.0038 (2)−0.0007 (3)
C160.0150 (3)0.0163 (4)0.0131 (3)0.0002 (3)0.0038 (2)0.0022 (3)
C170.0152 (3)0.0132 (4)0.0154 (3)0.0002 (3)0.0032 (2)0.0039 (3)
C180.0141 (3)0.0115 (3)0.0135 (3)0.0012 (3)0.0027 (2)0.0009 (3)
C190.0139 (3)0.0126 (3)0.0123 (3)−0.0011 (3)0.0023 (2)0.0003 (3)
N1—C11.4636 (10)C7—C121.3940 (11)
N1—C51.4644 (10)C7—C81.3964 (12)
N1—C61.4688 (11)C8—C91.3915 (11)
N2—C131.3924 (10)C8—H80.9500
N2—C31.4491 (11)C9—C101.3977 (12)
N2—H2N0.847 (14)C9—H90.9500
N3—C191.1492 (11)C10—C111.3867 (13)
C1—C21.5203 (12)C10—H100.9500
C1—H1A0.9900C11—C121.4004 (12)
C1—H1B0.9900C11—H110.9500
C2—C31.5414 (11)C12—H120.9500
C2—H2A0.9900C13—C141.4042 (11)
C2—H2B0.9900C13—C181.4047 (12)
C3—C191.4946 (11)C14—C151.3986 (11)
C3—C41.5443 (11)C14—H140.9500
C4—C51.5242 (12)C15—C161.3887 (12)
C4—H4A0.9900C15—H150.9500
C4—H4B0.9900C16—C171.3955 (12)
C5—H5A0.9900C16—H160.9500
C5—H5B0.9900C17—C181.3888 (11)
C6—C71.5119 (11)C17—H170.9500
C6—H6A0.9900C18—H180.9500
C6—H6B0.9900
C1—N1—C5110.18 (6)C7—C6—H6B109.4
C1—N1—C6110.34 (6)H6A—C6—H6B108.0
C5—N1—C6110.76 (7)C12—C7—C8118.96 (7)
C13—N2—C3126.55 (7)C12—C7—C6121.47 (7)
C13—N2—H2N118.2 (9)C8—C7—C6119.57 (7)
C3—N2—H2N113.6 (9)C9—C8—C7120.60 (7)
N1—C1—C2111.03 (6)C9—C8—H8119.7
N1—C1—H1A109.4C7—C8—H8119.7
C2—C1—H1A109.4C8—C9—C10120.23 (8)
N1—C1—H1B109.4C8—C9—H9119.9
C2—C1—H1B109.4C10—C9—H9119.9
H1A—C1—H1B108.0C11—C10—C9119.43 (8)
C1—C2—C3111.66 (7)C11—C10—H10120.3
C1—C2—H2A109.3C9—C10—H10120.3
C3—C2—H2A109.3C10—C11—C12120.29 (8)
C1—C2—H2B109.3C10—C11—H11119.9
C3—C2—H2B109.3C12—C11—H11119.9
H2A—C2—H2B108.0C7—C12—C11120.44 (8)
N2—C3—C19109.02 (7)C7—C12—H12119.8
N2—C3—C2108.01 (7)C11—C12—H12119.8
C19—C3—C2106.94 (6)N2—C13—C14123.69 (7)
N2—C3—C4114.82 (6)N2—C13—C18117.84 (7)
C19—C3—C4110.37 (7)C14—C13—C18118.43 (7)
C2—C3—C4107.35 (6)C15—C14—C13120.06 (8)
C5—C4—C3112.06 (6)C15—C14—H14120.0
C5—C4—H4A109.2C13—C14—H14120.0
C3—C4—H4A109.2C16—C15—C14121.12 (8)
C5—C4—H4B109.2C16—C15—H15119.4
C3—C4—H4B109.2C14—C15—H15119.4
H4A—C4—H4B107.9C15—C16—C17118.91 (7)
N1—C5—C4110.80 (7)C15—C16—H16120.5
N1—C5—H5A109.5C17—C16—H16120.5
C4—C5—H5A109.5C18—C17—C16120.59 (8)
N1—C5—H5B109.5C18—C17—H17119.7
C4—C5—H5B109.5C16—C17—H17119.7
H5A—C5—H5B108.1C17—C18—C13120.88 (8)
N1—C6—C7111.21 (7)C17—C18—H18119.6
N1—C6—H6A109.4C13—C18—H18119.6
C7—C6—H6A109.4N3—C19—C3177.73 (8)
N1—C6—H6B109.4
C5—N1—C1—C260.63 (9)C12—C7—C8—C9−1.83 (13)
C6—N1—C1—C2−176.75 (6)C6—C7—C8—C9179.10 (8)
N1—C1—C2—C3−58.68 (9)C7—C8—C9—C100.10 (13)
C13—N2—C3—C1963.33 (10)C8—C9—C10—C111.61 (14)
C13—N2—C3—C2179.19 (8)C9—C10—C11—C12−1.57 (14)
C13—N2—C3—C4−61.08 (11)C8—C7—C12—C111.86 (13)
C1—C2—C3—N2177.84 (6)C6—C7—C12—C11−179.09 (8)
C1—C2—C3—C19−64.94 (8)C10—C11—C12—C7−0.17 (14)
C1—C2—C3—C453.51 (8)C3—N2—C13—C14−9.65 (13)
N2—C3—C4—C5−173.35 (7)C3—N2—C13—C18172.56 (8)
C19—C3—C4—C562.96 (8)N2—C13—C14—C15−177.68 (8)
C2—C3—C4—C5−53.26 (8)C18—C13—C14—C150.09 (12)
C1—N1—C5—C4−59.98 (8)C13—C14—C15—C160.65 (12)
C6—N1—C5—C4177.65 (6)C14—C15—C16—C17−0.77 (12)
C3—C4—C5—N157.77 (8)C15—C16—C17—C180.15 (12)
C1—N1—C6—C769.20 (8)C16—C17—C18—C130.59 (12)
C5—N1—C6—C7−168.52 (6)N2—C13—C18—C17177.20 (7)
N1—C6—C7—C12−116.76 (9)C14—C13—C18—C17−0.70 (12)
N1—C6—C7—C862.28 (10)
D—H···AD—HH···AD···AD—H···A
N2—H2N···N3i0.847 (14)2.756 (13)3.5044 (12)148.2 (11)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯N3i0.847 (14)2.756 (13)3.5044 (12)148.2 (11)

Symmetry code: (i) .

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