| Literature DB >> 21202304 |
Yi-Feng Zhou, Xiao-Bing Wang, Jin Qi, Bo-Yang Yu.
Abstract
The title compound, C(18)H(17)NO(4), was isolated from an ethanol extract of Ophiopogon japonicus. The dihedral angle between the 4-hydroxy-3-methoxyphenyl ring and the pyrrolidine ring is 17.4 (1)°. The 4-hydroxyphenyl ring makes a dihedral angle of 69.74 (6)° with the least-squares plane through the 4-hydroxy-3-methoxyphenyl ring and the pyrrolidine ring. The conformation of the pyrrolidine fragment is similar to a T-form. The crystal structure is stabilized by inter-molecular N-H⋯O and O-H⋯O hydrogen bonds.Entities:
Year: 2008 PMID: 21202304 PMCID: PMC2961252 DOI: 10.1107/S1600536808008581
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H17NO4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1858 reflections |
| θ = 2.4–23.1º | |
| µ = 0.09 mm−1 | |
| β = 96.514 (2)º | Block, colourless |
| 0.47 × 0.42 × 0.35 mm | |
| Bruker SMART CCD area-detector diffractometer | 3387 independent reflections |
| Radiation source: fine-focus sealed tube | 1756 reflections with |
| Monochromator: graphite | |
| Detector resolution: 10.0 pixels mm-1 | θmax = 27.0º |
| θmin = 1.9º | |
| φ and ω scans | |
| Absorption correction: multi-scan( | |
| 9225 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.000 | |
| 3387 reflections | Δρmax = 0.22 e Å−3 |
| 209 parameters | Δρmin = −0.20 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| N | 0.1955 (3) | 0.50621 (13) | 0.43227 (10) | 0.0407 (5) | |
| H1 | 0.1694 | 0.5304 | 0.4766 | 0.049* | |
| O1 | −0.1146 (2) | 0.42888 (11) | 0.40852 (9) | 0.0482 (4) | |
| O2 | 0.3756 (3) | 0.78432 (11) | 0.09921 (11) | 0.0678 (6) | |
| H2 | 0.2621 | 0.8112 | 0.0921 | 0.102* | |
| O3 | 0.5094 (3) | 0.35253 (12) | 0.04340 (10) | 0.0600 (5) | |
| O4 | 0.2796 (3) | 0.20997 (13) | −0.01836 (11) | 0.0762 (6) | |
| H4 | 0.3957 | 0.2277 | −0.0283 | 0.114* | |
| C1 | 0.0580 (4) | 0.45390 (14) | 0.38830 (13) | 0.0372 (5) | |
| C2 | 0.1463 (3) | 0.43166 (15) | 0.31329 (12) | 0.0358 (5) | |
| C3 | 0.3493 (3) | 0.48408 (15) | 0.31322 (12) | 0.0382 (5) | |
| H3 | 0.4610 | 0.4408 | 0.3031 | 0.046* | |
| C4 | 0.3928 (4) | 0.5193 (2) | 0.39970 (13) | 0.0536 (7) | |
| H4A | 0.5045 | 0.4840 | 0.4294 | 0.064* | |
| H4B | 0.4325 | 0.5838 | 0.4008 | 0.064* | |
| C5 | 0.3457 (3) | 0.56253 (15) | 0.25340 (12) | 0.0365 (5) | |
| C6 | 0.1668 (4) | 0.59272 (15) | 0.20783 (14) | 0.0433 (6) | |
| H6 | 0.0395 | 0.5631 | 0.2121 | 0.052* | |
| C7 | 0.1720 (4) | 0.66655 (16) | 0.15552 (14) | 0.0472 (6) | |
| H7 | 0.0495 | 0.6858 | 0.1250 | 0.057* | |
| C8 | 0.3594 (4) | 0.71071 (16) | 0.14939 (14) | 0.0476 (6) | |
| C9 | 0.5397 (4) | 0.68061 (18) | 0.19335 (17) | 0.0562 (7) | |
| H9 | 0.6671 | 0.7098 | 0.1884 | 0.067* | |
| C10 | 0.5334 (4) | 0.60767 (17) | 0.24462 (15) | 0.0523 (7) | |
| H10 | 0.6572 | 0.5880 | 0.2741 | 0.063* | |
| C11 | 0.0515 (4) | 0.37125 (15) | 0.26114 (13) | 0.0401 (6) | |
| H11 | −0.0771 | 0.3493 | 0.2741 | 0.048* | |
| C12 | 0.1159 (4) | 0.33400 (15) | 0.18741 (13) | 0.0396 (6) | |
| C13 | 0.2897 (4) | 0.36572 (15) | 0.15170 (13) | 0.0419 (6) | |
| H13 | 0.3690 | 0.4145 | 0.1747 | 0.050* | |
| C14 | 0.3449 (4) | 0.32596 (16) | 0.08338 (13) | 0.0431 (6) | |
| C15 | 0.2293 (4) | 0.25225 (17) | 0.04909 (14) | 0.0507 (7) | |
| C16 | 0.0567 (4) | 0.22166 (18) | 0.08261 (15) | 0.0619 (8) | |
| H16 | −0.0229 | 0.1732 | 0.0591 | 0.074* | |
| C17 | −0.0002 (4) | 0.26206 (17) | 0.15097 (14) | 0.0536 (7) | |
| H17 | −0.1182 | 0.2407 | 0.1729 | 0.064* | |
| C18 | 0.6343 (4) | 0.4276 (2) | 0.07462 (17) | 0.0672 (8) | |
| H18A | 0.5482 | 0.4818 | 0.0749 | 0.101* | |
| H18B | 0.7457 | 0.4382 | 0.0420 | 0.101* | |
| H18C | 0.6937 | 0.4137 | 0.1281 | 0.101* |
| N | 0.0424 (11) | 0.0505 (12) | 0.0299 (10) | 0.0051 (9) | 0.0069 (8) | −0.0053 (9) |
| O1 | 0.0476 (10) | 0.0547 (11) | 0.0451 (10) | −0.0041 (8) | 0.0177 (8) | −0.0079 (8) |
| O2 | 0.0807 (14) | 0.0491 (11) | 0.0812 (14) | 0.0105 (10) | 0.0418 (11) | 0.0189 (10) |
| O3 | 0.0623 (11) | 0.0676 (12) | 0.0549 (11) | −0.0166 (10) | 0.0276 (9) | −0.0155 (9) |
| O4 | 0.0992 (15) | 0.0755 (13) | 0.0612 (12) | −0.0284 (11) | 0.0411 (11) | −0.0326 (10) |
| C1 | 0.0417 (13) | 0.0371 (13) | 0.0333 (12) | 0.0044 (11) | 0.0064 (10) | −0.0001 (10) |
| C2 | 0.0380 (12) | 0.0397 (13) | 0.0300 (12) | 0.0038 (10) | 0.0053 (10) | 0.0047 (10) |
| C3 | 0.0396 (13) | 0.0456 (14) | 0.0298 (12) | 0.0048 (11) | 0.0053 (10) | −0.0016 (10) |
| C4 | 0.0417 (14) | 0.085 (2) | 0.0340 (14) | −0.0061 (13) | 0.0032 (11) | −0.0047 (13) |
| C5 | 0.0387 (13) | 0.0396 (13) | 0.0319 (12) | −0.0006 (10) | 0.0071 (10) | −0.0053 (10) |
| C6 | 0.0380 (13) | 0.0444 (14) | 0.0483 (15) | −0.0005 (11) | 0.0087 (11) | 0.0033 (11) |
| C7 | 0.0463 (15) | 0.0490 (15) | 0.0466 (15) | 0.0082 (12) | 0.0070 (12) | 0.0062 (12) |
| C8 | 0.0598 (17) | 0.0367 (14) | 0.0506 (15) | 0.0017 (12) | 0.0251 (13) | 0.0006 (11) |
| C9 | 0.0492 (16) | 0.0550 (17) | 0.0660 (18) | −0.0134 (13) | 0.0137 (14) | 0.0001 (14) |
| C10 | 0.0410 (15) | 0.0613 (17) | 0.0540 (16) | −0.0058 (13) | 0.0026 (12) | 0.0039 (13) |
| C11 | 0.0427 (14) | 0.0413 (13) | 0.0373 (13) | −0.0026 (11) | 0.0090 (11) | 0.0029 (10) |
| C12 | 0.0480 (14) | 0.0402 (13) | 0.0314 (12) | −0.0016 (11) | 0.0077 (10) | −0.0009 (10) |
| C13 | 0.0490 (14) | 0.0412 (13) | 0.0361 (13) | −0.0059 (11) | 0.0073 (11) | −0.0052 (10) |
| C14 | 0.0497 (14) | 0.0435 (14) | 0.0376 (13) | −0.0030 (11) | 0.0117 (11) | −0.0006 (11) |
| C15 | 0.0682 (18) | 0.0477 (15) | 0.0384 (14) | −0.0065 (13) | 0.0164 (13) | −0.0084 (11) |
| C16 | 0.079 (2) | 0.0590 (18) | 0.0512 (16) | −0.0282 (15) | 0.0212 (14) | −0.0149 (13) |
| C17 | 0.0654 (18) | 0.0560 (16) | 0.0424 (15) | −0.0190 (13) | 0.0198 (13) | −0.0089 (12) |
| C18 | 0.0575 (18) | 0.079 (2) | 0.0671 (19) | −0.0173 (16) | 0.0167 (15) | −0.0032 (16) |
| N—C1 | 1.323 (3) | C6—H6 | 0.9300 |
| N—C4 | 1.444 (3) | C7—C8 | 1.372 (3) |
| N—H1 | 0.8600 | C7—H7 | 0.9300 |
| O1—C1 | 1.245 (2) | C8—C9 | 1.369 (3) |
| O2—C8 | 1.375 (3) | C9—C10 | 1.371 (3) |
| O2—H2 | 0.8200 | C9—H9 | 0.9300 |
| O3—C14 | 1.367 (3) | C10—H10 | 0.9300 |
| O3—C18 | 1.417 (3) | C11—C12 | 1.458 (3) |
| O4—C15 | 1.364 (3) | C11—H11 | 0.9300 |
| O4—H4 | 0.8200 | C12—C17 | 1.384 (3) |
| C1—C2 | 1.479 (3) | C12—C13 | 1.400 (3) |
| C2—C11 | 1.338 (3) | C13—C14 | 1.371 (3) |
| C2—C3 | 1.504 (3) | C13—H13 | 0.9300 |
| C3—C5 | 1.521 (3) | C14—C15 | 1.389 (3) |
| C3—C4 | 1.542 (3) | C15—C16 | 1.369 (3) |
| C3—H3 | 0.9800 | C16—C17 | 1.379 (3) |
| C4—H4A | 0.9700 | C16—H16 | 0.9300 |
| C4—H4B | 0.9700 | C17—H17 | 0.9300 |
| C5—C6 | 1.375 (3) | C18—H18A | 0.9600 |
| C5—C10 | 1.389 (3) | C18—H18B | 0.9600 |
| C6—C7 | 1.392 (3) | C18—H18C | 0.9600 |
| C1—N—C4 | 114.5 (2) | C7—C8—O2 | 122.5 (2) |
| C1—N—H1 | 122.8 | C8—C9—C10 | 120.4 (2) |
| C4—N—H1 | 122.8 | C8—C9—H9 | 119.8 |
| C8—O2—H2 | 109.5 | C10—C9—H9 | 119.8 |
| C14—O3—C18 | 117.7 (2) | C9—C10—C5 | 121.3 (2) |
| C15—O4—H4 | 109.5 | C9—C10—H10 | 119.4 |
| O1—C1—N | 124.4 (2) | C5—C10—H10 | 119.4 |
| O1—C1—C2 | 127.4 (2) | C2—C11—C12 | 130.9 (2) |
| N—C1—C2 | 108.20 (19) | C2—C11—H11 | 114.6 |
| C11—C2—C1 | 121.2 (2) | C12—C11—H11 | 114.6 |
| C11—C2—C3 | 131.1 (2) | C17—C12—C13 | 117.9 (2) |
| C1—C2—C3 | 107.6 (2) | C17—C12—C11 | 118.1 (2) |
| C2—C3—C5 | 115.6 (2) | C13—C12—C11 | 124.0 (2) |
| C2—C3—C4 | 103.3 (2) | C14—C13—C12 | 121.0 (2) |
| C5—C3—C4 | 111.6 (2) | C14—C13—H13 | 119.5 |
| C2—C3—H3 | 108.7 | C12—C13—H13 | 119.5 |
| C5—C3—H3 | 108.7 | O3—C14—C13 | 125.6 (2) |
| C4—C3—H3 | 108.7 | O3—C14—C15 | 114.4 (2) |
| N—C4—C3 | 104.2 (2) | C13—C14—C15 | 120.0 (2) |
| N—C4—H4A | 110.9 | O4—C15—C16 | 118.4 (2) |
| C3—C4—H4A | 110.9 | O4—C15—C14 | 122.0 (2) |
| N—C4—H4B | 110.9 | C16—C15—C14 | 119.5 (2) |
| C3—C4—H4B | 110.9 | C15—C16—C17 | 120.6 (2) |
| H4A—C4—H4B | 108.9 | C15—C16—H16 | 119.7 |
| C6—C5—C10 | 117.5 (2) | C17—C16—H16 | 119.7 |
| C6—C5—C3 | 124.0 (2) | C16—C17—C12 | 120.9 (2) |
| C10—C5—C3 | 118.4 (2) | C16—C17—H17 | 119.5 |
| C5—C6—C7 | 121.5 (2) | C12—C17—H17 | 119.5 |
| C5—C6—H6 | 119.2 | O3—C18—H18A | 109.5 |
| C7—C6—H6 | 119.2 | O3—C18—H18B | 109.5 |
| C8—C7—C6 | 119.4 (2) | H18A—C18—H18B | 109.5 |
| C8—C7—H7 | 120.3 | O3—C18—H18C | 109.5 |
| C6—C7—H7 | 120.3 | H18A—C18—H18C | 109.5 |
| C9—C8—C7 | 119.8 (2) | H18B—C18—H18C | 109.5 |
| C9—C8—O2 | 117.7 (2) | ||
| C4—N—C1—O1 | 174.6 (2) | O2—C8—C9—C10 | 179.8 (2) |
| C4—N—C1—C2 | −5.3 (3) | C8—C9—C10—C5 | 0.0 (4) |
| O1—C1—C2—C11 | −7.4 (4) | C6—C5—C10—C9 | 1.0 (3) |
| N—C1—C2—C11 | 172.5 (2) | C3—C5—C10—C9 | −178.1 (2) |
| O1—C1—C2—C3 | 175.2 (2) | C1—C2—C11—C12 | −175.0 (2) |
| N—C1—C2—C3 | −4.9 (2) | C3—C2—C11—C12 | 1.8 (4) |
| C11—C2—C3—C5 | 72.8 (3) | C2—C11—C12—C17 | 170.9 (2) |
| C1—C2—C3—C5 | −110.1 (2) | C2—C11—C12—C13 | −8.2 (4) |
| C11—C2—C3—C4 | −165.1 (2) | C17—C12—C13—C14 | −0.9 (4) |
| C1—C2—C3—C4 | 12.0 (2) | C11—C12—C13—C14 | 178.3 (2) |
| C1—N—C4—C3 | 12.9 (3) | C18—O3—C14—C13 | −0.1 (4) |
| C2—C3—C4—N | −14.5 (2) | C18—O3—C14—C15 | 179.8 (2) |
| C5—C3—C4—N | 110.3 (2) | C12—C13—C14—O3 | 179.0 (2) |
| C2—C3—C5—C6 | 7.3 (3) | C12—C13—C14—C15 | −0.8 (4) |
| C4—C3—C5—C6 | −110.3 (2) | O3—C14—C15—O4 | 0.8 (4) |
| C2—C3—C5—C10 | −173.59 (19) | C13—C14—C15—O4 | −179.3 (2) |
| C4—C3—C5—C10 | 68.8 (2) | O3—C14—C15—C16 | −177.9 (2) |
| C10—C5—C6—C7 | −0.9 (3) | C13—C14—C15—C16 | 2.0 (4) |
| C3—C5—C6—C7 | 178.2 (2) | O4—C15—C16—C17 | 179.8 (2) |
| C5—C6—C7—C8 | −0.3 (3) | C14—C15—C16—C17 | −1.5 (4) |
| C6—C7—C8—C9 | 1.4 (4) | C15—C16—C17—C12 | −0.3 (4) |
| C6—C7—C8—O2 | −179.7 (2) | C13—C12—C17—C16 | 1.4 (4) |
| C7—C8—C9—C10 | −1.2 (4) | C11—C12—C17—C16 | −177.8 (2) |
| H··· | ||||
| N—H1···O1i | 0.86 | 2.09 | 2.948 (2) | 172 |
| O2—H2···O1ii | 0.82 | 1.95 | 2.675 (2) | 147 |
| O4—H4···O2iii | 0.82 | 2.00 | 2.721 (2) | 147 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N—H1⋯O1i | 0.86 | 2.09 | 2.948 (2) | 172 |
| O2—H2⋯O1ii | 0.82 | 1.95 | 2.675 (2) | 147 |
| O4—H4⋯O2iii | 0.82 | 2.00 | 2.721 (2) | 147 |
Symmetry codes: (i) ; (ii) ; (iii) .