Literature DB >> 21202304

(E)-3-(4-Hydr-oxy-3-methoxy-benzyl-idene)-4-(4-hydroxy-phen-yl)pyrrolidin-2-one.

Yi-Feng Zhou, Xiao-Bing Wang, Jin Qi, Bo-Yang Yu.   

Abstract

The title compound, C(18)H(17)NO(4), was isolated from an ethanol extract of Ophiopogon japonicus. The dihedral angle between the 4-hydroxy-3-methoxyphenyl ring and the pyrrolidine ring is 17.4 (1)°. The 4-hydroxyphenyl ring makes a dihedral angle of 69.74 (6)° with the least-squares plane through the 4-hydroxy-3-methoxyphenyl ring and the pyrrolidine ring. The conformation of the pyrrolidine fragment is similar to a T-form. The crystal structure is stabilized by inter-molecular N-H⋯O and O-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21202304      PMCID: PMC2961252          DOI: 10.1107/S1600536808008581

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the chemical components and pharmacological properties of the plant Ophiopogon japonicus, see: Anh et al. (2003 ▶); Kou et al. (2005 ▶) & Yu (2007 ▶). For related literature, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C18H17NO4 M = 311.33 Monoclinic, a = 6.388 (1) Å b = 14.520 (2) Å c = 16.880 (2) Å β = 96.514 (2)° V = 1555.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 (2) K 0.47 × 0.42 × 0.35 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (; Sheldrick, 1999 ▶) T min = 0.954, T max = 0.969 9225 measured reflections 3387 independent reflections 1756 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.137 S = 1.02 3387 reflections 209 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT; data reduction: SAINT (Bruker, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808008581/lx2053sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808008581/lx2053Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H17NO4F000 = 656
Mr = 311.33Dx = 1.329 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1858 reflections
a = 6.388 (1) Åθ = 2.4–23.1º
b = 14.520 (2) ŵ = 0.09 mm1
c = 16.880 (2) ÅT = 298 (2) K
β = 96.514 (2)ºBlock, colourless
V = 1555.6 (4) Å30.47 × 0.42 × 0.35 mm
Z = 4
Bruker SMART CCD area-detector diffractometer3387 independent reflections
Radiation source: fine-focus sealed tube1756 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.041
Detector resolution: 10.0 pixels mm-1θmax = 27.0º
T = 298(2) Kθmin = 1.9º
φ and ω scansh = −8→7
Absorption correction: multi-scan(SADABS; Sheldrick, 1999)k = −13→18
Tmin = 0.954, Tmax = 0.969l = −20→21
9225 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.137  w = 1/[σ2(Fo2) + (0.0524P)2 + 0.295P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.000
3387 reflectionsΔρmax = 0.22 e Å3
209 parametersΔρmin = −0.20 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N0.1955 (3)0.50621 (13)0.43227 (10)0.0407 (5)
H10.16940.53040.47660.049*
O1−0.1146 (2)0.42888 (11)0.40852 (9)0.0482 (4)
O20.3756 (3)0.78432 (11)0.09921 (11)0.0678 (6)
H20.26210.81120.09210.102*
O30.5094 (3)0.35253 (12)0.04340 (10)0.0600 (5)
O40.2796 (3)0.20997 (13)−0.01836 (11)0.0762 (6)
H40.39570.2277−0.02830.114*
C10.0580 (4)0.45390 (14)0.38830 (13)0.0372 (5)
C20.1463 (3)0.43166 (15)0.31329 (12)0.0358 (5)
C30.3493 (3)0.48408 (15)0.31322 (12)0.0382 (5)
H30.46100.44080.30310.046*
C40.3928 (4)0.5193 (2)0.39970 (13)0.0536 (7)
H4A0.50450.48400.42940.064*
H4B0.43250.58380.40080.064*
C50.3457 (3)0.56253 (15)0.25340 (12)0.0365 (5)
C60.1668 (4)0.59272 (15)0.20783 (14)0.0433 (6)
H60.03950.56310.21210.052*
C70.1720 (4)0.66655 (16)0.15552 (14)0.0472 (6)
H70.04950.68580.12500.057*
C80.3594 (4)0.71071 (16)0.14939 (14)0.0476 (6)
C90.5397 (4)0.68061 (18)0.19335 (17)0.0562 (7)
H90.66710.70980.18840.067*
C100.5334 (4)0.60767 (17)0.24462 (15)0.0523 (7)
H100.65720.58800.27410.063*
C110.0515 (4)0.37125 (15)0.26114 (13)0.0401 (6)
H11−0.07710.34930.27410.048*
C120.1159 (4)0.33400 (15)0.18741 (13)0.0396 (6)
C130.2897 (4)0.36572 (15)0.15170 (13)0.0419 (6)
H130.36900.41450.17470.050*
C140.3449 (4)0.32596 (16)0.08338 (13)0.0431 (6)
C150.2293 (4)0.25225 (17)0.04909 (14)0.0507 (7)
C160.0567 (4)0.22166 (18)0.08261 (15)0.0619 (8)
H16−0.02290.17320.05910.074*
C17−0.0002 (4)0.26206 (17)0.15097 (14)0.0536 (7)
H17−0.11820.24070.17290.064*
C180.6343 (4)0.4276 (2)0.07462 (17)0.0672 (8)
H18A0.54820.48180.07490.101*
H18B0.74570.43820.04200.101*
H18C0.69370.41370.12810.101*
U11U22U33U12U13U23
N0.0424 (11)0.0505 (12)0.0299 (10)0.0051 (9)0.0069 (8)−0.0053 (9)
O10.0476 (10)0.0547 (11)0.0451 (10)−0.0041 (8)0.0177 (8)−0.0079 (8)
O20.0807 (14)0.0491 (11)0.0812 (14)0.0105 (10)0.0418 (11)0.0189 (10)
O30.0623 (11)0.0676 (12)0.0549 (11)−0.0166 (10)0.0276 (9)−0.0155 (9)
O40.0992 (15)0.0755 (13)0.0612 (12)−0.0284 (11)0.0411 (11)−0.0326 (10)
C10.0417 (13)0.0371 (13)0.0333 (12)0.0044 (11)0.0064 (10)−0.0001 (10)
C20.0380 (12)0.0397 (13)0.0300 (12)0.0038 (10)0.0053 (10)0.0047 (10)
C30.0396 (13)0.0456 (14)0.0298 (12)0.0048 (11)0.0053 (10)−0.0016 (10)
C40.0417 (14)0.085 (2)0.0340 (14)−0.0061 (13)0.0032 (11)−0.0047 (13)
C50.0387 (13)0.0396 (13)0.0319 (12)−0.0006 (10)0.0071 (10)−0.0053 (10)
C60.0380 (13)0.0444 (14)0.0483 (15)−0.0005 (11)0.0087 (11)0.0033 (11)
C70.0463 (15)0.0490 (15)0.0466 (15)0.0082 (12)0.0070 (12)0.0062 (12)
C80.0598 (17)0.0367 (14)0.0506 (15)0.0017 (12)0.0251 (13)0.0006 (11)
C90.0492 (16)0.0550 (17)0.0660 (18)−0.0134 (13)0.0137 (14)0.0001 (14)
C100.0410 (15)0.0613 (17)0.0540 (16)−0.0058 (13)0.0026 (12)0.0039 (13)
C110.0427 (14)0.0413 (13)0.0373 (13)−0.0026 (11)0.0090 (11)0.0029 (10)
C120.0480 (14)0.0402 (13)0.0314 (12)−0.0016 (11)0.0077 (10)−0.0009 (10)
C130.0490 (14)0.0412 (13)0.0361 (13)−0.0059 (11)0.0073 (11)−0.0052 (10)
C140.0497 (14)0.0435 (14)0.0376 (13)−0.0030 (11)0.0117 (11)−0.0006 (11)
C150.0682 (18)0.0477 (15)0.0384 (14)−0.0065 (13)0.0164 (13)−0.0084 (11)
C160.079 (2)0.0590 (18)0.0512 (16)−0.0282 (15)0.0212 (14)−0.0149 (13)
C170.0654 (18)0.0560 (16)0.0424 (15)−0.0190 (13)0.0198 (13)−0.0089 (12)
C180.0575 (18)0.079 (2)0.0671 (19)−0.0173 (16)0.0167 (15)−0.0032 (16)
N—C11.323 (3)C6—H60.9300
N—C41.444 (3)C7—C81.372 (3)
N—H10.8600C7—H70.9300
O1—C11.245 (2)C8—C91.369 (3)
O2—C81.375 (3)C9—C101.371 (3)
O2—H20.8200C9—H90.9300
O3—C141.367 (3)C10—H100.9300
O3—C181.417 (3)C11—C121.458 (3)
O4—C151.364 (3)C11—H110.9300
O4—H40.8200C12—C171.384 (3)
C1—C21.479 (3)C12—C131.400 (3)
C2—C111.338 (3)C13—C141.371 (3)
C2—C31.504 (3)C13—H130.9300
C3—C51.521 (3)C14—C151.389 (3)
C3—C41.542 (3)C15—C161.369 (3)
C3—H30.9800C16—C171.379 (3)
C4—H4A0.9700C16—H160.9300
C4—H4B0.9700C17—H170.9300
C5—C61.375 (3)C18—H18A0.9600
C5—C101.389 (3)C18—H18B0.9600
C6—C71.392 (3)C18—H18C0.9600
C1—N—C4114.5 (2)C7—C8—O2122.5 (2)
C1—N—H1122.8C8—C9—C10120.4 (2)
C4—N—H1122.8C8—C9—H9119.8
C8—O2—H2109.5C10—C9—H9119.8
C14—O3—C18117.7 (2)C9—C10—C5121.3 (2)
C15—O4—H4109.5C9—C10—H10119.4
O1—C1—N124.4 (2)C5—C10—H10119.4
O1—C1—C2127.4 (2)C2—C11—C12130.9 (2)
N—C1—C2108.20 (19)C2—C11—H11114.6
C11—C2—C1121.2 (2)C12—C11—H11114.6
C11—C2—C3131.1 (2)C17—C12—C13117.9 (2)
C1—C2—C3107.6 (2)C17—C12—C11118.1 (2)
C2—C3—C5115.6 (2)C13—C12—C11124.0 (2)
C2—C3—C4103.3 (2)C14—C13—C12121.0 (2)
C5—C3—C4111.6 (2)C14—C13—H13119.5
C2—C3—H3108.7C12—C13—H13119.5
C5—C3—H3108.7O3—C14—C13125.6 (2)
C4—C3—H3108.7O3—C14—C15114.4 (2)
N—C4—C3104.2 (2)C13—C14—C15120.0 (2)
N—C4—H4A110.9O4—C15—C16118.4 (2)
C3—C4—H4A110.9O4—C15—C14122.0 (2)
N—C4—H4B110.9C16—C15—C14119.5 (2)
C3—C4—H4B110.9C15—C16—C17120.6 (2)
H4A—C4—H4B108.9C15—C16—H16119.7
C6—C5—C10117.5 (2)C17—C16—H16119.7
C6—C5—C3124.0 (2)C16—C17—C12120.9 (2)
C10—C5—C3118.4 (2)C16—C17—H17119.5
C5—C6—C7121.5 (2)C12—C17—H17119.5
C5—C6—H6119.2O3—C18—H18A109.5
C7—C6—H6119.2O3—C18—H18B109.5
C8—C7—C6119.4 (2)H18A—C18—H18B109.5
C8—C7—H7120.3O3—C18—H18C109.5
C6—C7—H7120.3H18A—C18—H18C109.5
C9—C8—C7119.8 (2)H18B—C18—H18C109.5
C9—C8—O2117.7 (2)
C4—N—C1—O1174.6 (2)O2—C8—C9—C10179.8 (2)
C4—N—C1—C2−5.3 (3)C8—C9—C10—C50.0 (4)
O1—C1—C2—C11−7.4 (4)C6—C5—C10—C91.0 (3)
N—C1—C2—C11172.5 (2)C3—C5—C10—C9−178.1 (2)
O1—C1—C2—C3175.2 (2)C1—C2—C11—C12−175.0 (2)
N—C1—C2—C3−4.9 (2)C3—C2—C11—C121.8 (4)
C11—C2—C3—C572.8 (3)C2—C11—C12—C17170.9 (2)
C1—C2—C3—C5−110.1 (2)C2—C11—C12—C13−8.2 (4)
C11—C2—C3—C4−165.1 (2)C17—C12—C13—C14−0.9 (4)
C1—C2—C3—C412.0 (2)C11—C12—C13—C14178.3 (2)
C1—N—C4—C312.9 (3)C18—O3—C14—C13−0.1 (4)
C2—C3—C4—N−14.5 (2)C18—O3—C14—C15179.8 (2)
C5—C3—C4—N110.3 (2)C12—C13—C14—O3179.0 (2)
C2—C3—C5—C67.3 (3)C12—C13—C14—C15−0.8 (4)
C4—C3—C5—C6−110.3 (2)O3—C14—C15—O40.8 (4)
C2—C3—C5—C10−173.59 (19)C13—C14—C15—O4−179.3 (2)
C4—C3—C5—C1068.8 (2)O3—C14—C15—C16−177.9 (2)
C10—C5—C6—C7−0.9 (3)C13—C14—C15—C162.0 (4)
C3—C5—C6—C7178.2 (2)O4—C15—C16—C17179.8 (2)
C5—C6—C7—C8−0.3 (3)C14—C15—C16—C17−1.5 (4)
C6—C7—C8—C91.4 (4)C15—C16—C17—C12−0.3 (4)
C6—C7—C8—O2−179.7 (2)C13—C12—C17—C161.4 (4)
C7—C8—C9—C10−1.2 (4)C11—C12—C17—C16−177.8 (2)
D—H···AD—HH···AD···AD—H···A
N—H1···O1i0.862.092.948 (2)172
O2—H2···O1ii0.821.952.675 (2)147
O4—H4···O2iii0.822.002.721 (2)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N—H1⋯O1i0.862.092.948 (2)172
O2—H2⋯O1ii0.821.952.675 (2)147
O4—H4⋯O2iii0.822.002.721 (2)147

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Inhibitory effects of ethanol extract from Radix Ophiopogon japonicus on venous thrombosis linked with its endothelium-protective and anti-adhesive activities.

Authors:  Junping Kou; Boyang Yu; Qiang Xu
Journal:  Vascul Pharmacol       Date:  2005-09       Impact factor: 5.773

3.  Homoisoflavonoids from Ophiopogon japonicus Ker-Gawler.

Authors:  Nguyen Thi Hoang Anh; Tran Van Sung; Andrea Porzel; Katrin Franke; Ludger A Wessjohann
Journal:  Phytochemistry       Date:  2003-04       Impact factor: 4.072

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.