Literature DB >> 21202288

(Z)-1,3,4a-Trimethyl-5,5-diphenyl-6-oxa-1,3-diaza-bicyclo-[4.2.0]octane-2,4-dione.

Zhi-Cai Lin1, Jing-Bo Shi, Wen-Jian Tang, Jun Li.   

Abstract

The title compound, C(20)H(20)N(2)O(3), is a head-to-tail oxetane, one of the regioisomers obtained by the the Paternó-Büchi reaction of 1,3-dimethyl-thymine with benzophenone. The oxetane ring is folded, the dihedral angle between the C-O-C and C-C-C planes being 14.4 (2)°. The dihedral angle between the two phenyl rings is 64.3 (2)°. The pyrimidine ring adopts a boat conformation. The crystal structure involves weak C-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21202288      PMCID: PMC2961230          DOI: 10.1107/S1600536808006557

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Hei et al. (2005 ▶); Prakash et al. (1997 ▶).

Experimental

Crystal data

C20H20N2O3 M = 336.38 Monoclinic, a = 8.1341 (7) Å b = 9.1004 (13) Å c = 23.485 (2) Å β = 97.334 (2)° V = 1724.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 (2) K 0.45 × 0.41 × 0.18 mm

Data collection

Bruker SMART diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.962, T max = 0.984 8774 measured reflections 3039 independent reflections 1818 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.117 S = 1.01 3039 reflections 226 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808006557/wn2239sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808006557/wn2239Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H20N2O3F000 = 712
Mr = 336.38Dx = 1.296 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
a = 8.1341 (7) ÅCell parameters from 1952 reflections
b = 9.1004 (13) Åθ = 2.4–22.1º
c = 23.485 (2) ŵ = 0.09 mm1
β = 97.334 (2)ºT = 298 (2) K
V = 1724.2 (3) Å3Block, colorless
Z = 40.45 × 0.41 × 0.18 mm
Bruker SMART diffractometer3039 independent reflections
Radiation source: fine-focus sealed tube1818 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.036
T = 298(2) Kθmax = 25.0º
φ and ω scansθmin = 1.8º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.962, Tmax = 0.984k = −10→10
8774 measured reflectionsl = −24→27
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.117  w = 1/[σ2(Fo2) + (0.038P)2 + 0.7238P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
3039 reflectionsΔρmax = 0.20 e Å3
226 parametersΔρmin = −0.18 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
xyzUiso*/Ueq
N11.2692 (2)0.5663 (2)0.21196 (8)0.0491 (5)
N21.2831 (2)0.6885 (2)0.12510 (8)0.0492 (5)
O10.97763 (19)0.60800 (17)0.19685 (6)0.0469 (4)
O21.4490 (2)0.7527 (2)0.20642 (8)0.0750 (6)
O31.1732 (2)0.5833 (2)0.04218 (7)0.0625 (5)
C10.9036 (3)0.5849 (2)0.13794 (8)0.0379 (5)
C21.0673 (3)0.4991 (2)0.12589 (9)0.0380 (5)
C31.1126 (3)0.5076 (3)0.19078 (9)0.0427 (6)
H31.09490.41270.20880.051*
C41.3391 (3)0.6743 (3)0.18356 (11)0.0503 (6)
C51.1782 (3)0.5906 (3)0.09400 (10)0.0440 (6)
C60.7544 (3)0.4834 (2)0.13563 (9)0.0398 (6)
C70.7166 (3)0.4145 (3)0.18451 (11)0.0555 (7)
H70.77810.43580.21970.067*
C80.5890 (4)0.3147 (3)0.18183 (13)0.0654 (8)
H80.56460.26950.21530.079*
C90.4977 (3)0.2812 (3)0.13056 (13)0.0617 (8)
H90.41280.21240.12890.074*
C100.5325 (3)0.3502 (3)0.08148 (12)0.0580 (7)
H100.47010.32890.04650.070*
C110.6592 (3)0.4506 (3)0.08398 (10)0.0481 (6)
H110.68150.49710.05060.058*
C120.8626 (3)0.7299 (2)0.10882 (9)0.0385 (6)
C130.8285 (3)0.8494 (3)0.14167 (11)0.0505 (6)
H130.83360.83920.18130.061*
C140.7872 (4)0.9835 (3)0.11655 (14)0.0673 (8)
H140.76451.06290.13920.081*
C150.7794 (4)0.9999 (3)0.05856 (14)0.0727 (9)
H150.75231.09060.04170.087*
C160.8116 (4)0.8830 (3)0.02531 (12)0.0666 (8)
H160.80610.8942−0.01420.080*
C170.8520 (3)0.7485 (3)0.05001 (10)0.0504 (6)
H170.87240.66930.02690.060*
C181.0451 (3)0.3473 (3)0.09951 (10)0.0503 (6)
H18A0.98860.35520.06120.075*
H18B0.98090.28770.12220.075*
H18C1.15170.30290.09850.075*
C191.3263 (4)0.5493 (3)0.27297 (11)0.0783 (9)
H19A1.44320.56830.27990.117*
H19B1.30460.45080.28470.117*
H19C1.26860.61750.29450.117*
C201.3705 (4)0.7944 (3)0.09317 (13)0.0803 (10)
H20A1.45390.74450.07510.121*
H20B1.42180.86760.11900.121*
H20C1.29310.84080.06440.121*
U11U22U33U12U13U23
N10.0490 (13)0.0549 (13)0.0392 (12)0.0034 (11)−0.0110 (9)−0.0031 (10)
N20.0448 (12)0.0524 (13)0.0499 (13)−0.0048 (10)0.0035 (10)−0.0005 (10)
O10.0509 (10)0.0554 (11)0.0329 (9)0.0088 (8)−0.0009 (7)−0.0072 (7)
O20.0666 (13)0.0819 (14)0.0730 (13)−0.0225 (12)−0.0044 (11)−0.0256 (11)
O30.0560 (12)0.0921 (14)0.0402 (11)−0.0015 (10)0.0092 (8)−0.0015 (9)
C10.0403 (14)0.0433 (14)0.0290 (12)0.0050 (11)0.0004 (10)−0.0041 (10)
C20.0387 (13)0.0403 (13)0.0336 (12)0.0042 (11)−0.0008 (10)−0.0043 (10)
C30.0467 (15)0.0395 (14)0.0402 (14)0.0043 (12)−0.0011 (11)−0.0030 (11)
C40.0450 (15)0.0526 (17)0.0519 (16)0.0041 (13)0.0012 (13)−0.0122 (13)
C50.0377 (14)0.0522 (16)0.0414 (15)0.0069 (12)0.0024 (11)−0.0021 (12)
C60.0379 (13)0.0414 (14)0.0405 (14)0.0063 (11)0.0067 (11)0.0006 (11)
C70.0573 (17)0.0665 (18)0.0442 (15)−0.0029 (15)0.0119 (12)0.0020 (13)
C80.0656 (19)0.070 (2)0.065 (2)−0.0033 (16)0.0253 (16)0.0127 (15)
C90.0438 (16)0.0573 (18)0.085 (2)−0.0021 (14)0.0134 (15)0.0074 (16)
C100.0402 (15)0.0623 (18)0.0680 (19)−0.0026 (14)−0.0062 (13)0.0037 (15)
C110.0447 (15)0.0519 (16)0.0467 (15)−0.0002 (13)0.0015 (12)0.0076 (12)
C120.0324 (13)0.0391 (14)0.0434 (14)0.0010 (10)0.0027 (10)−0.0035 (11)
C130.0477 (15)0.0505 (16)0.0512 (15)0.0059 (13)−0.0016 (12)−0.0098 (13)
C140.073 (2)0.0418 (16)0.083 (2)0.0119 (14)−0.0031 (16)−0.0150 (15)
C150.087 (2)0.0434 (17)0.083 (2)0.0064 (15)−0.0078 (18)0.0103 (16)
C160.089 (2)0.0519 (18)0.0564 (17)0.0058 (16)−0.0001 (15)0.0085 (14)
C170.0587 (17)0.0438 (15)0.0483 (16)0.0068 (13)0.0059 (12)0.0010 (12)
C180.0462 (15)0.0501 (15)0.0524 (15)0.0065 (12)−0.0026 (12)−0.0129 (12)
C190.082 (2)0.095 (2)0.0493 (17)−0.0024 (19)−0.0221 (15)0.0001 (16)
C200.078 (2)0.082 (2)0.082 (2)−0.0240 (18)0.0150 (18)0.0105 (17)
N1—C41.353 (3)C9—H90.9300
N1—C31.412 (3)C10—C111.373 (3)
N1—C191.457 (3)C10—H100.9300
N2—C51.377 (3)C11—H110.9300
N2—C41.396 (3)C12—C131.381 (3)
N2—C201.460 (3)C12—C171.383 (3)
O1—C31.450 (3)C13—C141.379 (4)
O1—C11.452 (2)C13—H130.9300
O2—C41.214 (3)C14—C151.364 (4)
O3—C51.214 (3)C14—H140.9300
C1—C121.504 (3)C15—C161.365 (4)
C1—C61.521 (3)C15—H150.9300
C1—C21.600 (3)C16—C171.376 (3)
C2—C51.497 (3)C16—H160.9300
C2—C181.515 (3)C17—H170.9300
C2—C31.523 (3)C18—H18A0.9600
C3—H30.9800C18—H18B0.9600
C6—C71.376 (3)C18—H18C0.9600
C6—C111.386 (3)C19—H19A0.9600
C7—C81.375 (4)C19—H19B0.9600
C7—H70.9300C19—H19C0.9600
C8—C91.366 (4)C20—H20A0.9600
C8—H80.9300C20—H20B0.9600
C9—C101.373 (4)C20—H20C0.9600
C4—N1—C3121.2 (2)C11—C10—C9120.2 (3)
C4—N1—C19117.4 (2)C11—C10—H10119.9
C3—N1—C19117.8 (2)C9—C10—H10119.9
C5—N2—C4124.3 (2)C10—C11—C6120.9 (2)
C5—N2—C20117.6 (2)C10—C11—H11119.6
C4—N2—C20116.6 (2)C6—C11—H11119.6
C3—O1—C192.41 (14)C13—C12—C17118.0 (2)
O1—C1—C12110.28 (17)C13—C12—C1119.0 (2)
O1—C1—C6110.74 (17)C17—C12—C1122.9 (2)
C12—C1—C6112.78 (18)C14—C13—C12120.9 (2)
O1—C1—C289.20 (14)C14—C13—H13119.6
C12—C1—C2119.28 (18)C12—C13—H13119.6
C6—C1—C2112.08 (17)C15—C14—C13120.1 (3)
C5—C2—C18110.54 (19)C15—C14—H14119.9
C5—C2—C3112.83 (19)C13—C14—H14119.9
C18—C2—C3117.16 (19)C14—C15—C16119.9 (3)
C5—C2—C1112.63 (18)C14—C15—H15120.1
C18—C2—C1117.30 (18)C16—C15—H15120.1
C3—C2—C184.20 (15)C15—C16—C17120.3 (3)
N1—C3—O1112.77 (18)C15—C16—H16119.8
N1—C3—C2117.63 (19)C17—C16—H16119.8
O1—C3—C292.34 (15)C16—C17—C12120.7 (2)
N1—C3—H3110.9C16—C17—H17119.6
O1—C3—H3110.9C12—C17—H17119.6
C2—C3—H3110.9C2—C18—H18A109.5
O2—C4—N1122.7 (2)C2—C18—H18B109.5
O2—C4—N2120.6 (3)H18A—C18—H18B109.5
N1—C4—N2116.6 (2)C2—C18—H18C109.5
O3—C5—N2120.4 (2)H18A—C18—H18C109.5
O3—C5—C2121.7 (2)H18B—C18—H18C109.5
N2—C5—C2117.8 (2)N1—C19—H19A109.5
C7—C6—C11118.2 (2)N1—C19—H19B109.5
C7—C6—C1120.6 (2)H19A—C19—H19B109.5
C11—C6—C1121.07 (19)N1—C19—H19C109.5
C8—C7—C6120.7 (2)H19A—C19—H19C109.5
C8—C7—H7119.7H19B—C19—H19C109.5
C6—C7—H7119.7N2—C20—H20A109.5
C9—C8—C7120.7 (3)N2—C20—H20B109.5
C9—C8—H8119.7H20A—C20—H20B109.5
C7—C8—H8119.7N2—C20—H20C109.5
C8—C9—C10119.4 (3)H20A—C20—H20C109.5
C8—C9—H9120.3H20B—C20—H20C109.5
C10—C9—H9120.3
C3—O1—C1—C12−131.48 (18)C20—N2—C5—C2−170.0 (2)
C3—O1—C1—C6102.98 (19)C18—C2—C5—O337.6 (3)
C3—O1—C1—C2−10.39 (16)C3—C2—C5—O3170.9 (2)
O1—C1—C2—C5−102.41 (19)C1—C2—C5—O3−95.8 (3)
C12—C1—C2—C510.5 (3)C18—C2—C5—N2−144.8 (2)
C6—C1—C2—C5145.47 (19)C3—C2—C5—N2−11.4 (3)
O1—C1—C2—C18127.57 (19)C1—C2—C5—N281.9 (2)
C12—C1—C2—C18−119.5 (2)O1—C1—C6—C7−6.9 (3)
C6—C1—C2—C1815.5 (3)C12—C1—C6—C7−131.1 (2)
O1—C1—C2—C39.93 (15)C2—C1—C6—C791.0 (2)
C12—C1—C2—C3122.9 (2)O1—C1—C6—C11177.12 (19)
C6—C1—C2—C3−102.19 (18)C12—C1—C6—C1153.0 (3)
C4—N1—C3—O1−72.4 (3)C2—C1—C6—C11−85.0 (2)
C19—N1—C3—O185.8 (3)C11—C6—C7—C80.7 (4)
C4—N1—C3—C233.3 (3)C1—C6—C7—C8−175.3 (2)
C19—N1—C3—C2−168.6 (2)C6—C7—C8—C90.3 (4)
C1—O1—C3—N1132.30 (19)C7—C8—C9—C10−1.1 (4)
C1—O1—C3—C210.93 (17)C8—C9—C10—C110.7 (4)
C5—C2—C3—N1−15.1 (3)C9—C10—C11—C60.4 (4)
C18—C2—C3—N1115.0 (2)C7—C6—C11—C10−1.1 (3)
C1—C2—C3—N1−127.2 (2)C1—C6—C11—C10174.9 (2)
C5—C2—C3—O1102.19 (19)O1—C1—C12—C13−27.7 (3)
C18—C2—C3—O1−127.7 (2)C6—C1—C12—C1396.7 (2)
C1—C2—C3—O1−9.95 (15)C2—C1—C12—C13−128.7 (2)
C3—N1—C4—O2160.5 (2)O1—C1—C12—C17154.5 (2)
C19—N1—C4—O22.3 (4)C6—C1—C12—C17−81.1 (3)
C3—N1—C4—N2−22.0 (3)C2—C1—C12—C1753.5 (3)
C19—N1—C4—N2179.8 (2)C17—C12—C13—C14−0.8 (4)
C5—N2—C4—O2169.6 (2)C1—C12—C13—C14−178.7 (2)
C20—N2—C4—O23.8 (3)C12—C13—C14—C150.0 (4)
C5—N2—C4—N1−7.9 (3)C13—C14—C15—C160.5 (5)
C20—N2—C4—N1−173.7 (2)C14—C15—C16—C17−0.1 (5)
C4—N2—C5—O3−157.9 (2)C15—C16—C17—C12−0.7 (4)
C20—N2—C5—O37.7 (3)C13—C12—C17—C161.2 (4)
C4—N2—C5—C224.4 (3)C1—C12—C17—C16179.0 (2)
D—H···AD—HH···AD···AD—H···A
C3—H3···O2i0.982.533.431 (3)153
C7—H7···O10.932.372.745 (3)104
C8—H8···O1ii0.932.593.513 (3)171
C13—H13···O10.932.412.752 (3)101
C17—H17···O30.932.553.040 (3)113
C20—H20B···O20.962.292.682 (4)104
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O2i0.982.533.431 (3)153
C7—H7⋯O10.932.372.745 (3)104
C8—H8⋯O1ii0.932.593.513 (3)171
C13—H13⋯O10.932.412.752 (3)101
C17—H17⋯O30.932.553.040 (3)113
C20—H20B⋯O20.962.292.682 (4)104

Symmetry codes: (i) ; (ii) .

  2 in total

1.  Origin of a large temperature dependence of regioselectivity observed for [2 + 2] photocycloaddition (Paternò-Büchi reaction) of 1,3-dimethylthymine with benzophenone and its derivatives: conformational property of the intermediary triplet 1,4-diradicals.

Authors:  Xiao-Ming Hei; Qin-Hua Song; Xi-Bo Li; Wen-Jian Tang; Hong-Bo Wang; Qing-Xiang Guo
Journal:  J Org Chem       Date:  2005-04-01       Impact factor: 4.354

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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