| Literature DB >> 21202288 |
Zhi-Cai Lin1, Jing-Bo Shi, Wen-Jian Tang, Jun Li.
Abstract
The title compound, C(20)H(20)N(2)O(3), is a head-to-tail oxetane, one of the regioisomers obtained by the the Paternó-Büchi reaction of 1,3-dimethyl-thymine with benzophenone. The oxetane ring is folded, the dihedral angle between the C-O-C and C-C-C planes being 14.4 (2)°. The dihedral angle between the two phenyl rings is 64.3 (2)°. The pyrimidine ring adopts a boat conformation. The crystal structure involves weak C-H⋯O hydrogen bonds.Entities:
Year: 2008 PMID: 21202288 PMCID: PMC2961230 DOI: 10.1107/S1600536808006557
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H20N2O3 | |
| Monoclinic, | Mo |
| Cell parameters from 1952 reflections | |
| θ = 2.4–22.1º | |
| µ = 0.09 mm−1 | |
| β = 97.334 (2)º | |
| Block, colorless | |
| 0.45 × 0.41 × 0.18 mm |
| Bruker SMART diffractometer | 3039 independent reflections |
| Radiation source: fine-focus sealed tube | 1818 reflections with |
| Monochromator: graphite | |
| θmax = 25.0º | |
| φ and ω scans | θmin = 1.8º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 8774 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 3039 reflections | Δρmax = 0.20 e Å−3 |
| 226 parameters | Δρmin = −0.18 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| N1 | 1.2692 (2) | 0.5663 (2) | 0.21196 (8) | 0.0491 (5) | |
| N2 | 1.2831 (2) | 0.6885 (2) | 0.12510 (8) | 0.0492 (5) | |
| O1 | 0.97763 (19) | 0.60800 (17) | 0.19685 (6) | 0.0469 (4) | |
| O2 | 1.4490 (2) | 0.7527 (2) | 0.20642 (8) | 0.0750 (6) | |
| O3 | 1.1732 (2) | 0.5833 (2) | 0.04218 (7) | 0.0625 (5) | |
| C1 | 0.9036 (3) | 0.5849 (2) | 0.13794 (8) | 0.0379 (5) | |
| C2 | 1.0673 (3) | 0.4991 (2) | 0.12589 (9) | 0.0380 (5) | |
| C3 | 1.1126 (3) | 0.5076 (3) | 0.19078 (9) | 0.0427 (6) | |
| H3 | 1.0949 | 0.4127 | 0.2088 | 0.051* | |
| C4 | 1.3391 (3) | 0.6743 (3) | 0.18356 (11) | 0.0503 (6) | |
| C5 | 1.1782 (3) | 0.5906 (3) | 0.09400 (10) | 0.0440 (6) | |
| C6 | 0.7544 (3) | 0.4834 (2) | 0.13563 (9) | 0.0398 (6) | |
| C7 | 0.7166 (3) | 0.4145 (3) | 0.18451 (11) | 0.0555 (7) | |
| H7 | 0.7781 | 0.4358 | 0.2197 | 0.067* | |
| C8 | 0.5890 (4) | 0.3147 (3) | 0.18183 (13) | 0.0654 (8) | |
| H8 | 0.5646 | 0.2695 | 0.2153 | 0.079* | |
| C9 | 0.4977 (3) | 0.2812 (3) | 0.13056 (13) | 0.0617 (8) | |
| H9 | 0.4128 | 0.2124 | 0.1289 | 0.074* | |
| C10 | 0.5325 (3) | 0.3502 (3) | 0.08148 (12) | 0.0580 (7) | |
| H10 | 0.4701 | 0.3289 | 0.0465 | 0.070* | |
| C11 | 0.6592 (3) | 0.4506 (3) | 0.08398 (10) | 0.0481 (6) | |
| H11 | 0.6815 | 0.4971 | 0.0506 | 0.058* | |
| C12 | 0.8626 (3) | 0.7299 (2) | 0.10882 (9) | 0.0385 (6) | |
| C13 | 0.8285 (3) | 0.8494 (3) | 0.14167 (11) | 0.0505 (6) | |
| H13 | 0.8336 | 0.8392 | 0.1813 | 0.061* | |
| C14 | 0.7872 (4) | 0.9835 (3) | 0.11655 (14) | 0.0673 (8) | |
| H14 | 0.7645 | 1.0629 | 0.1392 | 0.081* | |
| C15 | 0.7794 (4) | 0.9999 (3) | 0.05856 (14) | 0.0727 (9) | |
| H15 | 0.7523 | 1.0906 | 0.0417 | 0.087* | |
| C16 | 0.8116 (4) | 0.8830 (3) | 0.02531 (12) | 0.0666 (8) | |
| H16 | 0.8061 | 0.8942 | −0.0142 | 0.080* | |
| C17 | 0.8520 (3) | 0.7485 (3) | 0.05001 (10) | 0.0504 (6) | |
| H17 | 0.8724 | 0.6693 | 0.0269 | 0.060* | |
| C18 | 1.0451 (3) | 0.3473 (3) | 0.09951 (10) | 0.0503 (6) | |
| H18A | 0.9886 | 0.3552 | 0.0612 | 0.075* | |
| H18B | 0.9809 | 0.2877 | 0.1222 | 0.075* | |
| H18C | 1.1517 | 0.3029 | 0.0985 | 0.075* | |
| C19 | 1.3263 (4) | 0.5493 (3) | 0.27297 (11) | 0.0783 (9) | |
| H19A | 1.4432 | 0.5683 | 0.2799 | 0.117* | |
| H19B | 1.3046 | 0.4508 | 0.2847 | 0.117* | |
| H19C | 1.2686 | 0.6175 | 0.2945 | 0.117* | |
| C20 | 1.3705 (4) | 0.7944 (3) | 0.09317 (13) | 0.0803 (10) | |
| H20A | 1.4539 | 0.7445 | 0.0751 | 0.121* | |
| H20B | 1.4218 | 0.8676 | 0.1190 | 0.121* | |
| H20C | 1.2931 | 0.8408 | 0.0644 | 0.121* |
| N1 | 0.0490 (13) | 0.0549 (13) | 0.0392 (12) | 0.0034 (11) | −0.0110 (9) | −0.0031 (10) |
| N2 | 0.0448 (12) | 0.0524 (13) | 0.0499 (13) | −0.0048 (10) | 0.0035 (10) | −0.0005 (10) |
| O1 | 0.0509 (10) | 0.0554 (11) | 0.0329 (9) | 0.0088 (8) | −0.0009 (7) | −0.0072 (7) |
| O2 | 0.0666 (13) | 0.0819 (14) | 0.0730 (13) | −0.0225 (12) | −0.0044 (11) | −0.0256 (11) |
| O3 | 0.0560 (12) | 0.0921 (14) | 0.0402 (11) | −0.0015 (10) | 0.0092 (8) | −0.0015 (9) |
| C1 | 0.0403 (14) | 0.0433 (14) | 0.0290 (12) | 0.0050 (11) | 0.0004 (10) | −0.0041 (10) |
| C2 | 0.0387 (13) | 0.0403 (13) | 0.0336 (12) | 0.0042 (11) | −0.0008 (10) | −0.0043 (10) |
| C3 | 0.0467 (15) | 0.0395 (14) | 0.0402 (14) | 0.0043 (12) | −0.0011 (11) | −0.0030 (11) |
| C4 | 0.0450 (15) | 0.0526 (17) | 0.0519 (16) | 0.0041 (13) | 0.0012 (13) | −0.0122 (13) |
| C5 | 0.0377 (14) | 0.0522 (16) | 0.0414 (15) | 0.0069 (12) | 0.0024 (11) | −0.0021 (12) |
| C6 | 0.0379 (13) | 0.0414 (14) | 0.0405 (14) | 0.0063 (11) | 0.0067 (11) | 0.0006 (11) |
| C7 | 0.0573 (17) | 0.0665 (18) | 0.0442 (15) | −0.0029 (15) | 0.0119 (12) | 0.0020 (13) |
| C8 | 0.0656 (19) | 0.070 (2) | 0.065 (2) | −0.0033 (16) | 0.0253 (16) | 0.0127 (15) |
| C9 | 0.0438 (16) | 0.0573 (18) | 0.085 (2) | −0.0021 (14) | 0.0134 (15) | 0.0074 (16) |
| C10 | 0.0402 (15) | 0.0623 (18) | 0.0680 (19) | −0.0026 (14) | −0.0062 (13) | 0.0037 (15) |
| C11 | 0.0447 (15) | 0.0519 (16) | 0.0467 (15) | −0.0002 (13) | 0.0015 (12) | 0.0076 (12) |
| C12 | 0.0324 (13) | 0.0391 (14) | 0.0434 (14) | 0.0010 (10) | 0.0027 (10) | −0.0035 (11) |
| C13 | 0.0477 (15) | 0.0505 (16) | 0.0512 (15) | 0.0059 (13) | −0.0016 (12) | −0.0098 (13) |
| C14 | 0.073 (2) | 0.0418 (16) | 0.083 (2) | 0.0119 (14) | −0.0031 (16) | −0.0150 (15) |
| C15 | 0.087 (2) | 0.0434 (17) | 0.083 (2) | 0.0064 (15) | −0.0078 (18) | 0.0103 (16) |
| C16 | 0.089 (2) | 0.0519 (18) | 0.0564 (17) | 0.0058 (16) | −0.0001 (15) | 0.0085 (14) |
| C17 | 0.0587 (17) | 0.0438 (15) | 0.0483 (16) | 0.0068 (13) | 0.0059 (12) | 0.0010 (12) |
| C18 | 0.0462 (15) | 0.0501 (15) | 0.0524 (15) | 0.0065 (12) | −0.0026 (12) | −0.0129 (12) |
| C19 | 0.082 (2) | 0.095 (2) | 0.0493 (17) | −0.0024 (19) | −0.0221 (15) | 0.0001 (16) |
| C20 | 0.078 (2) | 0.082 (2) | 0.082 (2) | −0.0240 (18) | 0.0150 (18) | 0.0105 (17) |
| N1—C4 | 1.353 (3) | C9—H9 | 0.9300 |
| N1—C3 | 1.412 (3) | C10—C11 | 1.373 (3) |
| N1—C19 | 1.457 (3) | C10—H10 | 0.9300 |
| N2—C5 | 1.377 (3) | C11—H11 | 0.9300 |
| N2—C4 | 1.396 (3) | C12—C13 | 1.381 (3) |
| N2—C20 | 1.460 (3) | C12—C17 | 1.383 (3) |
| O1—C3 | 1.450 (3) | C13—C14 | 1.379 (4) |
| O1—C1 | 1.452 (2) | C13—H13 | 0.9300 |
| O2—C4 | 1.214 (3) | C14—C15 | 1.364 (4) |
| O3—C5 | 1.214 (3) | C14—H14 | 0.9300 |
| C1—C12 | 1.504 (3) | C15—C16 | 1.365 (4) |
| C1—C6 | 1.521 (3) | C15—H15 | 0.9300 |
| C1—C2 | 1.600 (3) | C16—C17 | 1.376 (3) |
| C2—C5 | 1.497 (3) | C16—H16 | 0.9300 |
| C2—C18 | 1.515 (3) | C17—H17 | 0.9300 |
| C2—C3 | 1.523 (3) | C18—H18A | 0.9600 |
| C3—H3 | 0.9800 | C18—H18B | 0.9600 |
| C6—C7 | 1.376 (3) | C18—H18C | 0.9600 |
| C6—C11 | 1.386 (3) | C19—H19A | 0.9600 |
| C7—C8 | 1.375 (4) | C19—H19B | 0.9600 |
| C7—H7 | 0.9300 | C19—H19C | 0.9600 |
| C8—C9 | 1.366 (4) | C20—H20A | 0.9600 |
| C8—H8 | 0.9300 | C20—H20B | 0.9600 |
| C9—C10 | 1.373 (4) | C20—H20C | 0.9600 |
| C4—N1—C3 | 121.2 (2) | C11—C10—C9 | 120.2 (3) |
| C4—N1—C19 | 117.4 (2) | C11—C10—H10 | 119.9 |
| C3—N1—C19 | 117.8 (2) | C9—C10—H10 | 119.9 |
| C5—N2—C4 | 124.3 (2) | C10—C11—C6 | 120.9 (2) |
| C5—N2—C20 | 117.6 (2) | C10—C11—H11 | 119.6 |
| C4—N2—C20 | 116.6 (2) | C6—C11—H11 | 119.6 |
| C3—O1—C1 | 92.41 (14) | C13—C12—C17 | 118.0 (2) |
| O1—C1—C12 | 110.28 (17) | C13—C12—C1 | 119.0 (2) |
| O1—C1—C6 | 110.74 (17) | C17—C12—C1 | 122.9 (2) |
| C12—C1—C6 | 112.78 (18) | C14—C13—C12 | 120.9 (2) |
| O1—C1—C2 | 89.20 (14) | C14—C13—H13 | 119.6 |
| C12—C1—C2 | 119.28 (18) | C12—C13—H13 | 119.6 |
| C6—C1—C2 | 112.08 (17) | C15—C14—C13 | 120.1 (3) |
| C5—C2—C18 | 110.54 (19) | C15—C14—H14 | 119.9 |
| C5—C2—C3 | 112.83 (19) | C13—C14—H14 | 119.9 |
| C18—C2—C3 | 117.16 (19) | C14—C15—C16 | 119.9 (3) |
| C5—C2—C1 | 112.63 (18) | C14—C15—H15 | 120.1 |
| C18—C2—C1 | 117.30 (18) | C16—C15—H15 | 120.1 |
| C3—C2—C1 | 84.20 (15) | C15—C16—C17 | 120.3 (3) |
| N1—C3—O1 | 112.77 (18) | C15—C16—H16 | 119.8 |
| N1—C3—C2 | 117.63 (19) | C17—C16—H16 | 119.8 |
| O1—C3—C2 | 92.34 (15) | C16—C17—C12 | 120.7 (2) |
| N1—C3—H3 | 110.9 | C16—C17—H17 | 119.6 |
| O1—C3—H3 | 110.9 | C12—C17—H17 | 119.6 |
| C2—C3—H3 | 110.9 | C2—C18—H18A | 109.5 |
| O2—C4—N1 | 122.7 (2) | C2—C18—H18B | 109.5 |
| O2—C4—N2 | 120.6 (3) | H18A—C18—H18B | 109.5 |
| N1—C4—N2 | 116.6 (2) | C2—C18—H18C | 109.5 |
| O3—C5—N2 | 120.4 (2) | H18A—C18—H18C | 109.5 |
| O3—C5—C2 | 121.7 (2) | H18B—C18—H18C | 109.5 |
| N2—C5—C2 | 117.8 (2) | N1—C19—H19A | 109.5 |
| C7—C6—C11 | 118.2 (2) | N1—C19—H19B | 109.5 |
| C7—C6—C1 | 120.6 (2) | H19A—C19—H19B | 109.5 |
| C11—C6—C1 | 121.07 (19) | N1—C19—H19C | 109.5 |
| C8—C7—C6 | 120.7 (2) | H19A—C19—H19C | 109.5 |
| C8—C7—H7 | 119.7 | H19B—C19—H19C | 109.5 |
| C6—C7—H7 | 119.7 | N2—C20—H20A | 109.5 |
| C9—C8—C7 | 120.7 (3) | N2—C20—H20B | 109.5 |
| C9—C8—H8 | 119.7 | H20A—C20—H20B | 109.5 |
| C7—C8—H8 | 119.7 | N2—C20—H20C | 109.5 |
| C8—C9—C10 | 119.4 (3) | H20A—C20—H20C | 109.5 |
| C8—C9—H9 | 120.3 | H20B—C20—H20C | 109.5 |
| C10—C9—H9 | 120.3 | ||
| C3—O1—C1—C12 | −131.48 (18) | C20—N2—C5—C2 | −170.0 (2) |
| C3—O1—C1—C6 | 102.98 (19) | C18—C2—C5—O3 | 37.6 (3) |
| C3—O1—C1—C2 | −10.39 (16) | C3—C2—C5—O3 | 170.9 (2) |
| O1—C1—C2—C5 | −102.41 (19) | C1—C2—C5—O3 | −95.8 (3) |
| C12—C1—C2—C5 | 10.5 (3) | C18—C2—C5—N2 | −144.8 (2) |
| C6—C1—C2—C5 | 145.47 (19) | C3—C2—C5—N2 | −11.4 (3) |
| O1—C1—C2—C18 | 127.57 (19) | C1—C2—C5—N2 | 81.9 (2) |
| C12—C1—C2—C18 | −119.5 (2) | O1—C1—C6—C7 | −6.9 (3) |
| C6—C1—C2—C18 | 15.5 (3) | C12—C1—C6—C7 | −131.1 (2) |
| O1—C1—C2—C3 | 9.93 (15) | C2—C1—C6—C7 | 91.0 (2) |
| C12—C1—C2—C3 | 122.9 (2) | O1—C1—C6—C11 | 177.12 (19) |
| C6—C1—C2—C3 | −102.19 (18) | C12—C1—C6—C11 | 53.0 (3) |
| C4—N1—C3—O1 | −72.4 (3) | C2—C1—C6—C11 | −85.0 (2) |
| C19—N1—C3—O1 | 85.8 (3) | C11—C6—C7—C8 | 0.7 (4) |
| C4—N1—C3—C2 | 33.3 (3) | C1—C6—C7—C8 | −175.3 (2) |
| C19—N1—C3—C2 | −168.6 (2) | C6—C7—C8—C9 | 0.3 (4) |
| C1—O1—C3—N1 | 132.30 (19) | C7—C8—C9—C10 | −1.1 (4) |
| C1—O1—C3—C2 | 10.93 (17) | C8—C9—C10—C11 | 0.7 (4) |
| C5—C2—C3—N1 | −15.1 (3) | C9—C10—C11—C6 | 0.4 (4) |
| C18—C2—C3—N1 | 115.0 (2) | C7—C6—C11—C10 | −1.1 (3) |
| C1—C2—C3—N1 | −127.2 (2) | C1—C6—C11—C10 | 174.9 (2) |
| C5—C2—C3—O1 | 102.19 (19) | O1—C1—C12—C13 | −27.7 (3) |
| C18—C2—C3—O1 | −127.7 (2) | C6—C1—C12—C13 | 96.7 (2) |
| C1—C2—C3—O1 | −9.95 (15) | C2—C1—C12—C13 | −128.7 (2) |
| C3—N1—C4—O2 | 160.5 (2) | O1—C1—C12—C17 | 154.5 (2) |
| C19—N1—C4—O2 | 2.3 (4) | C6—C1—C12—C17 | −81.1 (3) |
| C3—N1—C4—N2 | −22.0 (3) | C2—C1—C12—C17 | 53.5 (3) |
| C19—N1—C4—N2 | 179.8 (2) | C17—C12—C13—C14 | −0.8 (4) |
| C5—N2—C4—O2 | 169.6 (2) | C1—C12—C13—C14 | −178.7 (2) |
| C20—N2—C4—O2 | 3.8 (3) | C12—C13—C14—C15 | 0.0 (4) |
| C5—N2—C4—N1 | −7.9 (3) | C13—C14—C15—C16 | 0.5 (5) |
| C20—N2—C4—N1 | −173.7 (2) | C14—C15—C16—C17 | −0.1 (5) |
| C4—N2—C5—O3 | −157.9 (2) | C15—C16—C17—C12 | −0.7 (4) |
| C20—N2—C5—O3 | 7.7 (3) | C13—C12—C17—C16 | 1.2 (4) |
| C4—N2—C5—C2 | 24.4 (3) | C1—C12—C17—C16 | 179.0 (2) |
| H··· | ||||
| C3—H3···O2i | 0.98 | 2.53 | 3.431 (3) | 153 |
| C7—H7···O1 | 0.93 | 2.37 | 2.745 (3) | 104 |
| C8—H8···O1ii | 0.93 | 2.59 | 3.513 (3) | 171 |
| C13—H13···O1 | 0.93 | 2.41 | 2.752 (3) | 101 |
| C17—H17···O3 | 0.93 | 2.55 | 3.040 (3) | 113 |
| C20—H20B···O2 | 0.96 | 2.29 | 2.682 (4) | 104 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C3—H3⋯O2i | 0.98 | 2.53 | 3.431 (3) | 153 |
| C7—H7⋯O1 | 0.93 | 2.37 | 2.745 (3) | 104 |
| C8—H8⋯O1ii | 0.93 | 2.59 | 3.513 (3) | 171 |
| C13—H13⋯O1 | 0.93 | 2.41 | 2.752 (3) | 101 |
| C17—H17⋯O3 | 0.93 | 2.55 | 3.040 (3) | 113 |
| C20—H20 | 0.96 | 2.29 | 2.682 (4) | 104 |
Symmetry codes: (i) ; (ii) .