| Literature DB >> 21202232 |
Shafqat Nadeem, M Khawar Rauf, Masahiro Ebihara, Syed Ahmed Tirmizi, Saeed Ahmad.
Abstract
The title compound, [Pd(CH(4)N(2)S)(4)](SCN)(2), consists of complex [Pd(TU)(4)](2+) [TU = thio-urea, SC(NH(2))(2)] cations and thio-cyanate counter-anions. The Pd(II) cation is situated on an inversion centre and exhibits an almost square-planar coordination by the S atoms of the TU ligands. The complex cations are connected through the thio-cyanate ions via N-H⋯N [2.922 (3)-3.056 (3) Å] and N-H⋯S [3.369 (2)-3.645 (2) Å] hydrogen bonds.Entities:
Year: 2008 PMID: 21202232 PMCID: PMC2961283 DOI: 10.1107/S160053680801088X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Pd(CH4N2S)4](SCN)2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3103 reflections |
| θ = 3.4–27.5º | |
| µ = 1.69 mm−1 | |
| β = 91.12 (5)º | Prism, orange |
| 0.30 × 0.25 × 0.22 mm | |
| Rigaku/MSC Mercury CCD diffractometer | 2117 independent reflections |
| Radiation source: fine-focus sealed tube | 2040 reflections with |
| Monochromator: graphite | |
| θmax = 27.5º | |
| ω scans | θmin = 3.9º |
| Absorption correction: integration(NUMABS; Higashi, 1999) | |
| 7301 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.001 | |
| 2117 reflections | Δρmax = 0.66 e Å−3 |
| 106 parameters | Δρmin = −0.48 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Pd1 | 0.0000 | 0.5000 | 0.5000 | 0.00900 (6) | |
| S1 | −0.19061 (6) | 0.37251 (3) | 0.56476 (5) | 0.01265 (10) | |
| C1 | −0.1354 (2) | 0.26304 (14) | 0.4664 (2) | 0.0140 (4) | |
| N1 | −0.0189 (2) | 0.26297 (13) | 0.36425 (19) | 0.0197 (4) | |
| H1A | 0.0068 | 0.2054 | 0.3175 | 0.024* | |
| H1B | 0.0332 | 0.3205 | 0.3429 | 0.024* | |
| N2 | −0.2134 (2) | 0.17612 (13) | 0.49809 (19) | 0.0199 (4) | |
| H2A | −0.1874 | 0.1187 | 0.4511 | 0.024* | |
| H2B | −0.2911 | 0.1759 | 0.5661 | 0.024* | |
| S2 | 0.13159 (6) | 0.47003 (4) | 0.73312 (5) | 0.01300 (10) | |
| C2 | 0.3204 (2) | 0.41505 (14) | 0.7012 (2) | 0.0141 (4) | |
| N3 | 0.3774 (2) | 0.39827 (14) | 0.56415 (18) | 0.0201 (4) | |
| H3A | 0.4743 | 0.3693 | 0.5534 | 0.024* | |
| H3B | 0.3184 | 0.4160 | 0.4835 | 0.024* | |
| N4 | 0.4105 (2) | 0.38793 (14) | 0.82155 (19) | 0.0219 (4) | |
| H4A | 0.5073 | 0.3591 | 0.8096 | 0.026* | |
| H4B | 0.3736 | 0.3988 | 0.9134 | 0.026* | |
| S3 | 0.22933 (7) | 0.42269 (4) | 0.17265 (6) | 0.02044 (12) | |
| C3 | 0.4076 (3) | 0.36611 (15) | 0.2055 (2) | 0.0186 (4) | |
| N5 | 0.5334 (2) | 0.32525 (15) | 0.2287 (2) | 0.0260 (4) |
| Pd1 | 0.00878 (10) | 0.00771 (9) | 0.01049 (9) | 0.00000 (7) | −0.00061 (7) | 0.00047 (7) |
| S1 | 0.0121 (2) | 0.0103 (2) | 0.0156 (2) | −0.00127 (17) | 0.00147 (17) | −0.00054 (16) |
| C1 | 0.0152 (10) | 0.0128 (9) | 0.0137 (9) | −0.0004 (7) | −0.0027 (7) | 0.0001 (7) |
| N1 | 0.0228 (10) | 0.0129 (8) | 0.0238 (9) | −0.0030 (7) | 0.0077 (7) | −0.0057 (6) |
| N2 | 0.0248 (10) | 0.0115 (8) | 0.0236 (9) | −0.0039 (7) | 0.0073 (7) | −0.0027 (7) |
| S2 | 0.0111 (2) | 0.0163 (2) | 0.0115 (2) | 0.00134 (17) | −0.00052 (16) | 0.00123 (16) |
| C2 | 0.0126 (9) | 0.0124 (9) | 0.0172 (9) | −0.0010 (7) | −0.0007 (7) | 0.0011 (7) |
| N3 | 0.0166 (9) | 0.0275 (9) | 0.0162 (8) | 0.0096 (7) | 0.0005 (7) | 0.0019 (7) |
| N4 | 0.0170 (9) | 0.0309 (10) | 0.0176 (8) | 0.0108 (8) | −0.0040 (7) | 0.0005 (7) |
| S3 | 0.0193 (3) | 0.0202 (2) | 0.0220 (2) | 0.0026 (2) | 0.0054 (2) | 0.00404 (19) |
| C3 | 0.0235 (12) | 0.0183 (10) | 0.0144 (9) | −0.0049 (8) | 0.0061 (8) | −0.0029 (7) |
| N5 | 0.0232 (11) | 0.0256 (9) | 0.0292 (10) | 0.0018 (8) | 0.0031 (8) | −0.0007 (8) |
| Pd1—S2 | 2.3302 (11) | N2—H2B | 0.8800 |
| Pd1—S2i | 2.3302 (11) | S2—C2 | 1.721 (2) |
| Pd1—S1 | 2.3448 (8) | C2—N3 | 1.320 (3) |
| Pd1—S1i | 2.3448 (8) | C2—N4 | 1.325 (3) |
| S1—C1 | 1.727 (2) | N3—H3A | 0.8800 |
| C1—N1 | 1.320 (3) | N3—H3B | 0.8800 |
| C1—N2 | 1.326 (3) | N4—H4A | 0.8800 |
| N1—H1A | 0.8800 | N4—H4B | 0.8800 |
| N1—H1B | 0.8800 | S3—C3 | 1.646 (2) |
| N2—H2A | 0.8800 | C3—N5 | 1.167 (3) |
| S2—Pd1—S2i | 180.0 | C1—N2—H2B | 120.0 |
| S2—Pd1—S1 | 87.86 (3) | H2A—N2—H2B | 120.0 |
| S2i—Pd1—S1 | 92.14 (3) | C2—S2—Pd1 | 108.72 (7) |
| S2—Pd1—S1i | 92.14 (3) | N3—C2—N4 | 119.29 (18) |
| S2i—Pd1—S1i | 87.86 (3) | N3—C2—S2 | 123.27 (15) |
| S1—Pd1—S1i | 180.0 | N4—C2—S2 | 117.44 (15) |
| C1—S1—Pd1 | 106.11 (7) | C2—N3—H3A | 120.0 |
| N1—C1—N2 | 119.74 (17) | C2—N3—H3B | 120.0 |
| N1—C1—S1 | 122.68 (15) | H3A—N3—H3B | 120.0 |
| N2—C1—S1 | 117.57 (15) | C2—N4—H4A | 120.0 |
| C1—N1—H1A | 120.0 | C2—N4—H4B | 120.0 |
| C1—N1—H1B | 120.0 | H4A—N4—H4B | 120.0 |
| H1A—N1—H1B | 120.0 | N5—C3—S3 | 179.5 (2) |
| C1—N2—H2A | 120.0 | ||
| S2—Pd1—S1—C1 | −101.78 (7) | S1—Pd1—S2—C2 | 112.12 (7) |
| S2i—Pd1—S1—C1 | 78.22 (7) | S1i—Pd1—S2—C2 | −67.88 (7) |
| Pd1—S1—C1—N1 | −6.95 (19) | Pd1—S2—C2—N3 | 2.44 (18) |
| Pd1—S1—C1—N2 | 172.15 (14) | Pd1—S2—C2—N4 | −176.95 (14) |
| H··· | ||||
| N1—H1B···S3 | 0.88 | 2.58 | 3.369 (2) | 150 |
| N1—H1A···S2ii | 0.88 | 2.60 | 3.466 (2) | 166 |
| N2—H2A···S3iii | 0.88 | 2.78 | 3.615 (2) | 158 |
| N2—H2B···N5iv | 0.88 | 2.04 | 2.922 (3) | 178 |
| N3—H3B···S3 | 0.88 | 2.82 | 3.645 (2) | 157 |
| N3—H3A···S1v | 0.88 | 2.73 | 3.531 (2) | 153 |
| N4—H4B···S3vi | 0.88 | 2.61 | 3.482 (2) | 173 |
| N4—H4A···N5vii | 0.88 | 2.50 | 3.056 (3) | 121 |
| Pd1—S2 | 2.3302 (11) |
| Pd1—S1 | 2.3448 (8) |
| S2—Pd1—S2i | 180 |
| S2—Pd1—S1 | 87.86 (3) |
| S2i—Pd1—S1 | 92.14 (3) |
Symmetry code: (i) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.88 | 2.58 | 3.369 (2) | 150 |
| N1—H1 | 0.88 | 2.60 | 3.466 (2) | 166 |
| N2—H2 | 0.88 | 2.78 | 3.615 (2) | 158 |
| N2—H2 | 0.88 | 2.04 | 2.922 (3) | 178 |
| N3—H3 | 0.88 | 2.82 | 3.645 (2) | 157 |
| N3—H3 | 0.88 | 2.73 | 3.531 (2) | 153 |
| N4—H4 | 0.88 | 2.61 | 3.482 (2) | 173 |
| N4—H4 | 0.88 | 2.50 | 3.056 (3) | 121 |
Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .