Literature DB >> 21202232

Tetrakis(thiourea-κS)palladium(II) dithio-cyanate.

Shafqat Nadeem, M Khawar Rauf, Masahiro Ebihara, Syed Ahmed Tirmizi, Saeed Ahmad.   

Abstract

The title compound, [Pd(CH(4)N(2)S)(4)](SCN)(2), consists of complex [Pd(TU)(4)](2+) [TU = thio-urea, SC(NH(2))(2)] cations and thio-cyanate counter-anions. The Pd(II) cation is situated on an inversion centre and exhibits an almost square-planar coordination by the S atoms of the TU ligands. The complex cations are connected through the thio-cyanate ions via N-H⋯N [2.922 (3)-3.056 (3) Å] and N-H⋯S [3.369 (2)-3.645 (2) Å] hydrogen bonds.

Entities:  

Year:  2008        PMID: 21202232      PMCID: PMC2961283          DOI: 10.1107/S160053680801088X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the coordination chemistry of thio­nes and thio­nates, and for biomolecules possessing thio­amido binding sites, see: Akrivos (2001 ▶); Raper (1996 ▶); Cusumano et al. (2005 ▶). For other structures listed in the Cambridge Structural Database (Allen, 2002 ▶) that contain transition metals and thio­urea ligands, see: Bott et al. (1998 ▶); Dupa & Krebs (1973 ▶); Gale et al. (2006 ▶); Hunt et al. (1979 ▶); Taylor et al. (1974 ▶).

Experimental

Crystal data

[Pd(CH4N2S)4](SCN)2 M = 527.05 Monoclinic, a = 8.136 (3) Å b = 12.966 (5) Å c = 8.810 (3) Å β = 91.12 (5)° V = 929.3 (6) Å3 Z = 2 Mo Kα radiation μ = 1.69 mm−1 T = 123 (2) K 0.30 × 0.25 × 0.22 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer Absorption correction: integration (NUMABS; Higashi, 1999 ▶) T min = 0.632, T max = 0.708 7301 measured reflections 2117 independent reflections 2040 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.043 S = 1.35 2117 reflections 106 parameters H-atom parameters constrained Δρmax = 0.66 e Å−3 Δρmin = −0.48 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2001 ▶); cell refinement: CrystalClear; data reduction: TEXSAN (Molecular Structure Corporation & Rigaku, 2004 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97 and TEXSAN. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680801088X/wm2176sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680801088X/wm2176Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Pd(CH4N2S)4](SCN)2F000 = 528
Mr = 527.05Dx = 1.884 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71070 Å
Hall symbol: -P 2ybcCell parameters from 3103 reflections
a = 8.136 (3) Åθ = 3.4–27.5º
b = 12.966 (5) ŵ = 1.69 mm1
c = 8.810 (3) ÅT = 123 (2) K
β = 91.12 (5)ºPrism, orange
V = 929.3 (6) Å30.30 × 0.25 × 0.22 mm
Z = 2
Rigaku/MSC Mercury CCD diffractometer2117 independent reflections
Radiation source: fine-focus sealed tube2040 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.025
T = 123(2) Kθmax = 27.5º
ω scansθmin = 3.9º
Absorption correction: integration(NUMABS; Higashi, 1999)h = −8→10
Tmin = 0.632, Tmax = 0.708k = −16→13
7301 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.022H-atom parameters constrained
wR(F2) = 0.043  w = 1/[σ2(Fo2) + 0.6382P] where P = (Fo2 + 2Fc2)/3
S = 1.35(Δ/σ)max = 0.001
2117 reflectionsΔρmax = 0.66 e Å3
106 parametersΔρmin = −0.48 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.00000.50000.50000.00900 (6)
S1−0.19061 (6)0.37251 (3)0.56476 (5)0.01265 (10)
C1−0.1354 (2)0.26304 (14)0.4664 (2)0.0140 (4)
N1−0.0189 (2)0.26297 (13)0.36425 (19)0.0197 (4)
H1A0.00680.20540.31750.024*
H1B0.03320.32050.34290.024*
N2−0.2134 (2)0.17612 (13)0.49809 (19)0.0199 (4)
H2A−0.18740.11870.45110.024*
H2B−0.29110.17590.56610.024*
S20.13159 (6)0.47003 (4)0.73312 (5)0.01300 (10)
C20.3204 (2)0.41505 (14)0.7012 (2)0.0141 (4)
N30.3774 (2)0.39827 (14)0.56415 (18)0.0201 (4)
H3A0.47430.36930.55340.024*
H3B0.31840.41600.48350.024*
N40.4105 (2)0.38793 (14)0.82155 (19)0.0219 (4)
H4A0.50730.35910.80960.026*
H4B0.37360.39880.91340.026*
S30.22933 (7)0.42269 (4)0.17265 (6)0.02044 (12)
C30.4076 (3)0.36611 (15)0.2055 (2)0.0186 (4)
N50.5334 (2)0.32525 (15)0.2287 (2)0.0260 (4)
U11U22U33U12U13U23
Pd10.00878 (10)0.00771 (9)0.01049 (9)0.00000 (7)−0.00061 (7)0.00047 (7)
S10.0121 (2)0.0103 (2)0.0156 (2)−0.00127 (17)0.00147 (17)−0.00054 (16)
C10.0152 (10)0.0128 (9)0.0137 (9)−0.0004 (7)−0.0027 (7)0.0001 (7)
N10.0228 (10)0.0129 (8)0.0238 (9)−0.0030 (7)0.0077 (7)−0.0057 (6)
N20.0248 (10)0.0115 (8)0.0236 (9)−0.0039 (7)0.0073 (7)−0.0027 (7)
S20.0111 (2)0.0163 (2)0.0115 (2)0.00134 (17)−0.00052 (16)0.00123 (16)
C20.0126 (9)0.0124 (9)0.0172 (9)−0.0010 (7)−0.0007 (7)0.0011 (7)
N30.0166 (9)0.0275 (9)0.0162 (8)0.0096 (7)0.0005 (7)0.0019 (7)
N40.0170 (9)0.0309 (10)0.0176 (8)0.0108 (8)−0.0040 (7)0.0005 (7)
S30.0193 (3)0.0202 (2)0.0220 (2)0.0026 (2)0.0054 (2)0.00404 (19)
C30.0235 (12)0.0183 (10)0.0144 (9)−0.0049 (8)0.0061 (8)−0.0029 (7)
N50.0232 (11)0.0256 (9)0.0292 (10)0.0018 (8)0.0031 (8)−0.0007 (8)
Pd1—S22.3302 (11)N2—H2B0.8800
Pd1—S2i2.3302 (11)S2—C21.721 (2)
Pd1—S12.3448 (8)C2—N31.320 (3)
Pd1—S1i2.3448 (8)C2—N41.325 (3)
S1—C11.727 (2)N3—H3A0.8800
C1—N11.320 (3)N3—H3B0.8800
C1—N21.326 (3)N4—H4A0.8800
N1—H1A0.8800N4—H4B0.8800
N1—H1B0.8800S3—C31.646 (2)
N2—H2A0.8800C3—N51.167 (3)
S2—Pd1—S2i180.0C1—N2—H2B120.0
S2—Pd1—S187.86 (3)H2A—N2—H2B120.0
S2i—Pd1—S192.14 (3)C2—S2—Pd1108.72 (7)
S2—Pd1—S1i92.14 (3)N3—C2—N4119.29 (18)
S2i—Pd1—S1i87.86 (3)N3—C2—S2123.27 (15)
S1—Pd1—S1i180.0N4—C2—S2117.44 (15)
C1—S1—Pd1106.11 (7)C2—N3—H3A120.0
N1—C1—N2119.74 (17)C2—N3—H3B120.0
N1—C1—S1122.68 (15)H3A—N3—H3B120.0
N2—C1—S1117.57 (15)C2—N4—H4A120.0
C1—N1—H1A120.0C2—N4—H4B120.0
C1—N1—H1B120.0H4A—N4—H4B120.0
H1A—N1—H1B120.0N5—C3—S3179.5 (2)
C1—N2—H2A120.0
S2—Pd1—S1—C1−101.78 (7)S1—Pd1—S2—C2112.12 (7)
S2i—Pd1—S1—C178.22 (7)S1i—Pd1—S2—C2−67.88 (7)
Pd1—S1—C1—N1−6.95 (19)Pd1—S2—C2—N32.44 (18)
Pd1—S1—C1—N2172.15 (14)Pd1—S2—C2—N4−176.95 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1B···S30.882.583.369 (2)150
N1—H1A···S2ii0.882.603.466 (2)166
N2—H2A···S3iii0.882.783.615 (2)158
N2—H2B···N5iv0.882.042.922 (3)178
N3—H3B···S30.882.823.645 (2)157
N3—H3A···S1v0.882.733.531 (2)153
N4—H4B···S3vi0.882.613.482 (2)173
N4—H4A···N5vii0.882.503.056 (3)121
Pd1—S22.3302 (11)
Pd1—S12.3448 (8)
S2—Pd1—S2i180
S2—Pd1—S187.86 (3)
S2i—Pd1—S192.14 (3)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯S30.882.583.369 (2)150
N1—H1A⋯S2ii0.882.603.466 (2)166
N2—H2A⋯S3iii0.882.783.615 (2)158
N2—H2B⋯N5iv0.882.042.922 (3)178
N3—H3B⋯S30.882.823.645 (2)157
N3—H3A⋯S1v0.882.733.531 (2)153
N4—H4B⋯S3vi0.882.613.482 (2)173
N4—H4A⋯N5vii0.882.503.056 (3)121

Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

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