Literature DB >> 21202217

Tetra-aqua-bis(pyridine-3-sulfonato-κN)nickel(II).

Bing-Yu Zhang1, Jing-Jing Nie, Duan-Jun Xu.   

Abstract

In the mol-ecule of the title compound, [Ni(C(5)H(4)NO(3)S)(2)(H(2)O)(4)], the Ni(II) cation is located on an inversion center and is coordinated by four water mol-ecules and two pyridine-3-sulfonate anions with an NiN(2)O(4) distorted octa-hedral geometry. The face-to-face separation of 3.561 (5) Å between parallel pyridine rings indicates the existence of weak π-π stacking between the pyridine rings. The structure also contains inter-molecular O-H⋯O hydrogen bonding and weak C-H⋯O hydrogen bonding.

Entities:  

Year:  2008        PMID: 21202217      PMCID: PMC2961246          DOI: 10.1107/S1600536808010076

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Deisenhofer & Michel (1989 ▶); Su & Xu (2004 ▶); Liu et al. (2004 ▶); Li et al. (2005 ▶). For a related structure, see: Walsh & Hathaway (1980 ▶). For related literature, see: Cotton & Wilkinson (1972 ▶).

Experimental

Crystal data

[Ni(C5H4NO3S)2(H2O)4] M = 447.08 Monoclinic, a = 7.5399 (8) Å b = 12.6939 (15) Å c = 8.7810 (8) Å β = 97.419 (12)° V = 833.40 (15) Å3 Z = 2 Mo Kα radiation μ = 1.47 mm−1 T = 295 (2) K 0.32 × 0.22 × 0.20 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.660, T max = 0.745 8877 measured reflections 1524 independent reflections 1449 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.065 S = 1.06 1524 reflections 115 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.37 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808010076/om2227sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808010076/om2227Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C5H4NO3S)2(H2O)4]F000 = 460
Mr = 447.08Dx = 1.782 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5256 reflections
a = 7.5399 (8) Åθ = 2.8–24.0º
b = 12.6939 (15) ŵ = 1.47 mm1
c = 8.7810 (8) ÅT = 295 (2) K
β = 97.419 (12)ºPrism, blue
V = 833.40 (15) Å30.32 × 0.22 × 0.20 mm
Z = 2
Rigaku R-AXIS RAPID IP diffractometer1524 independent reflections
Radiation source: fine-focus sealed tube1449 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.019
Detector resolution: 10.0 pixels mm-1θmax = 25.4º
T = 295(2) Kθmin = 2.8º
ω scansh = −9→9
Absorption correction: multi-scan(ABSCOR; Higashi, 1995)k = −15→15
Tmin = 0.660, Tmax = 0.745l = −9→10
8877 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.024H-atom parameters constrained
wR(F2) = 0.065  w = 1/[σ2(Fo2) + (0.0323P)2 + 0.5265P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
1524 reflectionsΔρmax = 0.29 e Å3
115 parametersΔρmin = −0.37 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni0.50000.50000.50000.02883 (13)
S0.45204 (7)0.75905 (4)−0.03581 (6)0.03407 (15)
N10.5850 (2)0.54221 (13)0.28948 (18)0.0307 (3)
O10.76142 (19)0.48676 (11)0.60868 (18)0.0388 (3)
H1B0.83260.53970.59000.058*
H1A0.81820.43330.59980.058*
O20.50231 (19)0.34035 (11)0.45010 (17)0.0411 (3)
H2A0.50760.31560.36150.062*
H2B0.41940.30210.48150.062*
O30.5370 (3)0.76975 (16)−0.1732 (2)0.0687 (6)
O40.4828 (2)0.85025 (12)0.0624 (2)0.0554 (5)
O50.2658 (2)0.73019 (12)−0.06337 (19)0.0481 (4)
C10.7217 (3)0.49242 (15)0.2368 (3)0.0370 (5)
H10.77680.43720.29430.044*
C20.7839 (3)0.51907 (18)0.1020 (3)0.0452 (5)
H20.87830.48190.06930.054*
C30.7053 (3)0.60162 (17)0.0150 (3)0.0405 (5)
H30.74610.6218−0.07620.049*
C40.5641 (2)0.65298 (14)0.0684 (2)0.0298 (4)
C50.5074 (3)0.62143 (15)0.2044 (2)0.0320 (4)
H50.41160.65650.23840.038*
U11U22U33U12U13U23
Ni0.0309 (2)0.0273 (2)0.0284 (2)0.00105 (13)0.00426 (14)0.00418 (13)
S0.0419 (3)0.0278 (3)0.0317 (3)0.0027 (2)0.0018 (2)0.00399 (19)
N10.0329 (8)0.0290 (8)0.0302 (8)0.0016 (7)0.0037 (6)0.0034 (7)
O10.0336 (7)0.0355 (8)0.0467 (9)0.0018 (6)0.0031 (6)0.0056 (6)
O20.0512 (9)0.0328 (8)0.0409 (8)−0.0017 (6)0.0122 (7)−0.0002 (6)
O30.0861 (14)0.0758 (13)0.0491 (11)0.0261 (11)0.0269 (10)0.0305 (9)
O40.0591 (10)0.0297 (8)0.0707 (11)0.0048 (7)−0.0174 (8)−0.0095 (8)
O50.0441 (9)0.0358 (8)0.0600 (10)0.0039 (7)−0.0103 (7)−0.0022 (7)
C10.0360 (11)0.0328 (11)0.0417 (12)0.0064 (8)0.0034 (9)0.0061 (8)
C20.0417 (12)0.0431 (12)0.0542 (14)0.0126 (10)0.0188 (10)0.0065 (10)
C30.0455 (12)0.0393 (11)0.0395 (12)0.0036 (9)0.0154 (9)0.0055 (9)
C40.0337 (9)0.0255 (9)0.0295 (10)−0.0002 (7)0.0016 (8)0.0005 (7)
C50.0333 (9)0.0314 (10)0.0313 (10)0.0041 (8)0.0047 (8)0.0004 (8)
Ni—O1i2.0828 (14)O1—H1B0.8886
Ni—O12.0828 (14)O1—H1A0.8115
Ni—O2i2.0739 (14)O2—H2A0.8450
Ni—O22.0739 (14)O2—H2B0.8642
Ni—N1i2.1026 (16)C1—C21.370 (3)
Ni—N12.1026 (16)C1—H10.9300
S—O51.4412 (16)C2—C31.384 (3)
S—O31.4438 (18)C2—H20.9300
S—O41.4445 (16)C3—C41.381 (3)
S—C41.7788 (19)C3—H30.9300
N1—C11.341 (3)C4—C51.379 (3)
N1—C51.341 (2)C5—H50.9300
O2i—Ni—O2180.0C5—N1—Ni121.36 (13)
O2i—Ni—O1i89.12 (6)Ni—O1—H1B114.4
O2—Ni—O1i90.88 (6)Ni—O1—H1A120.2
O2i—Ni—O190.88 (6)H1B—O1—H1A106.0
O2—Ni—O189.12 (6)Ni—O2—H2A124.1
O1i—Ni—O1180.0Ni—O2—H2B117.1
O2i—Ni—N1i92.95 (6)H2A—O2—H2B101.9
O2—Ni—N1i87.05 (6)N1—C1—C2123.07 (19)
O1i—Ni—N1i92.61 (6)N1—C1—H1118.5
O1—Ni—N1i87.39 (6)C2—C1—H1118.5
O2i—Ni—N187.05 (6)C1—C2—C3119.6 (2)
O2—Ni—N192.95 (6)C1—C2—H2120.2
O1i—Ni—N187.39 (6)C3—C2—H2120.2
O1—Ni—N192.61 (6)C4—C3—C2117.6 (2)
N1i—Ni—N1180.0C4—C3—H3121.2
O5—S—O3114.30 (12)C2—C3—H3121.2
O5—S—O4112.45 (10)C5—C4—C3119.71 (18)
O3—S—O4111.67 (12)C5—C4—S119.06 (14)
O5—S—C4106.36 (9)C3—C4—S121.23 (15)
O3—S—C4105.58 (10)N1—C5—C4122.60 (18)
O4—S—C4105.69 (9)N1—C5—H5118.7
C1—N1—C5117.40 (17)C4—C5—H5118.7
C1—N1—Ni121.22 (13)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O3ii0.812.393.162 (3)158
O1—H1A···O4ii0.812.443.119 (2)142
O1—H1B···O4iii0.891.832.722 (2)177
O2—H2A···O3iv0.841.972.787 (2)163
O2—H2B···O5v0.861.892.748 (2)174
C1—H1···O4ii0.932.343.212 (3)155
Table 1

Selected bond lengths (Å)

Ni—O12.0828 (14)
Ni—O22.0739 (14)
Ni—N12.1026 (16)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O3i0.812.393.162 (3)158
O1—H1A⋯O4i0.812.443.119 (2)142
O1—H1B⋯O4ii0.891.832.722 (2)177
O2—H2A⋯O3iii0.841.972.787 (2)163
O2—H2B⋯O5iv0.861.892.748 (2)174
C1—H1⋯O4i0.932.343.212 (3)155

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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