Literature DB >> 21202205

{2-[(3,5-Dichloro-2-oxidobenzyl-idene)amino-κN,O]-3-methyl-penta-noato-κO}(N,N'-dimethyl-formamide-κO)copper(II).

Jin Hong Xia, Zheng Liu, Yuan Wang, Xiao Zhen Feng.   

Abstract

In the title compound, [Cu(C(13)H(13)Cl(2)NO(3))(C(3)H(7)NO)], the Cu(II) atom is coordinated in a slightly distorted square-planar geometry by two O atoms and one N atom from the tridentate chiral ligand 2-[(3,5-dichloro-2-oxidobenzyl-idene)amino]-3-methyl-penta-noate and by one O atom from dimethyl-formamide. In the crystal structure, the Cu atom forms contacts with Cl and O atoms of two units (Cu⋯Cl and Cu⋯O = 3.401 and 2.947 Å, respectively), thereby forming an approximately octa-hedral arrangement. A three-dimensional network is constructed through Cl⋯Cu, O⋯Cu, Cl⋯Cl contacts and C-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21202205      PMCID: PMC2961092          DOI: 10.1107/S160053680800932X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For Schiff base complexes containing amino acids, see: Garcia-Raso et al. (1996 ▶); Dawes et al. (1982 ▶); Laurent et al. (1982 ▶); Zhang et al. (2006 ▶). For related literature, see: Cohen et al. (1964 ▶); Garcia-Orozco et al. (2002 ▶); Hu & Englert (2006 ▶); Royles & Sherrington (2000 ▶); Subramanian et al. (2000 ▶); Zaman et al. (2004 ▶); Zordan et al. (2005 ▶).

Experimental

Crystal data

[Cu(C13H13Cl2NO3)(C3H7NO)] M = 438.78 Orthorhombic, a = 11.671 (2) Å b = 27.465 (3) Å c = 5.8890 (18) Å V = 1887.7 (7) Å3 Z = 4 Mo Kα radiation μ = 1.46 mm−1 T = 298 (2) K 0.43 × 0.15 × 0.13 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.572, T max = 0.833 9274 measured reflections 3260 independent reflections 2288 reflections with I > 2σ(I) R int = 0.086

Refinement

R[F 2 > 2σ(F 2)] = 0.095 wR(F 2) = 0.242 S = 1.05 3260 reflections 226 parameters H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −1.08 e Å−3 Absolute structure: Flack (1983 ▶), with 1915 Friedel pairs Flack parameter: 0.11 (6) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680800932X/gw2039sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680800932X/gw2039Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C13H13Cl2NO3)(C3H7NO)]Dx = 1.544 Mg m3
Mr = 438.78Mo Kα radiation λ = 0.71073 Å
Orthorhombic, P21212Cell parameters from 1991 reflections
a = 11.671 (2) Åθ = 2.3–20.3º
b = 27.465 (3) ŵ = 1.46 mm1
c = 5.8890 (18) ÅT = 298 (2) K
V = 1887.7 (7) Å3Block, blue
Z = 40.43 × 0.15 × 0.13 mm
F000 = 900
Bruker SMART CCD area-detector diffractometer3260 independent reflections
Radiation source: fine-focus sealed tube2288 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.087
T = 298(2) Kθmax = 25.0º
φ and ω scansθmin = 1.5º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −9→13
Tmin = 0.572, Tmax = 0.833k = −32→32
9274 measured reflectionsl = −6→6
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.095  w = 1/[σ2(Fo2) + (0.1179P)2 + 7.0901P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.242(Δ/σ)max = 0.001
S = 1.05Δρmax = 0.54 e Å3
3260 reflectionsΔρmin = −1.08 e Å3
226 parametersExtinction correction: none
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1310 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.11 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.13255 (12)0.88233 (5)0.7191 (3)0.0369 (4)
Cl10.0068 (3)0.79870 (13)0.0644 (6)0.0481 (9)
Cl20.2946 (3)0.65124 (12)0.2389 (8)0.0671 (12)
N10.2606 (8)0.8445 (3)0.8257 (17)0.033 (2)
N2−0.1115 (10)0.9551 (4)0.3728 (17)0.043 (3)
O10.1585 (7)0.9174 (3)0.9935 (17)0.046 (2)
O20.2565 (10)0.9193 (4)1.3185 (19)0.063 (3)
O30.0957 (7)0.8388 (3)0.4856 (18)0.044 (2)
O40.0063 (7)0.9243 (3)0.6463 (15)0.039 (2)
C10.2446 (12)0.9026 (5)1.125 (2)0.038 (3)
C20.3198 (12)0.8638 (4)1.029 (2)0.035 (3)
H20.32940.83771.14110.042*
C30.4373 (11)0.8833 (7)0.960 (3)0.059 (4)
H30.47620.85840.86870.071*
C40.5115 (15)0.8947 (7)1.168 (3)0.067 (5)
H4A0.58740.90391.11620.080*
H4B0.47890.92261.24570.080*
C50.5232 (16)0.8529 (7)1.338 (3)0.077 (5)
H5A0.46510.85591.45230.115*
H5B0.59740.85421.40760.115*
H5C0.51450.82241.26000.115*
C60.4285 (13)0.9300 (7)0.818 (3)0.077 (6)
H6A0.37010.92610.70440.116*
H6B0.50070.93630.74530.116*
H6C0.40920.95680.91500.116*
C70.2818 (10)0.7995 (4)0.755 (2)0.040 (3)
H70.33220.78130.84260.047*
C80.2357 (11)0.7757 (4)0.557 (2)0.034 (3)
C90.1437 (12)0.7977 (4)0.428 (2)0.041 (3)
C100.1061 (8)0.7732 (4)0.235 (2)0.031 (3)
C110.1625 (11)0.7281 (4)0.181 (2)0.043 (3)
H110.14180.71230.04740.051*
C120.2427 (10)0.7075 (5)0.310 (3)0.043 (3)
C130.2807 (11)0.7309 (5)0.495 (3)0.044 (3)
H130.33800.71700.58360.053*
C14−0.0233 (13)0.9290 (4)0.448 (3)0.048 (4)
H140.02030.91280.33930.058*
C15−0.1907 (13)0.9786 (5)0.540 (3)0.053 (4)
H15A−0.24020.95440.60470.080*
H15B−0.23611.00280.46360.080*
H15C−0.14670.99380.65790.080*
C16−0.1495 (16)0.9579 (7)0.135 (3)0.063 (5)
H16A−0.08820.94780.03660.094*
H16B−0.17090.99080.09950.094*
H16C−0.21430.93680.11290.094*
U11U22U33U12U13U23
Cu10.0356 (7)0.0313 (6)0.0437 (9)0.0098 (6)−0.0076 (7)−0.0074 (7)
Cl10.0389 (18)0.061 (2)0.044 (2)−0.0044 (16)−0.0118 (16)0.0061 (17)
Cl20.081 (3)0.0460 (18)0.074 (3)−0.0011 (17)0.018 (3)−0.019 (2)
N10.039 (5)0.030 (5)0.028 (6)0.009 (4)−0.013 (5)−0.012 (4)
N20.044 (7)0.055 (7)0.030 (6)0.032 (6)0.002 (5)0.011 (5)
O10.024 (5)0.049 (5)0.066 (7)0.017 (4)−0.021 (4)−0.005 (5)
O20.069 (7)0.066 (7)0.055 (7)0.012 (6)−0.009 (6)−0.021 (6)
O30.040 (5)0.024 (4)0.069 (7)0.009 (4)−0.012 (4)−0.010 (4)
O40.026 (4)0.060 (6)0.031 (5)0.004 (4)0.004 (4)−0.002 (4)
C10.032 (7)0.042 (7)0.041 (8)−0.008 (6)0.012 (6)−0.014 (6)
C20.051 (8)0.034 (6)0.020 (6)0.007 (5)0.006 (6)−0.004 (5)
C30.022 (7)0.086 (11)0.068 (10)0.020 (8)−0.006 (7)−0.017 (11)
C40.054 (9)0.091 (13)0.056 (10)−0.008 (9)−0.011 (8)−0.011 (9)
C50.063 (11)0.091 (13)0.076 (13)0.003 (10)−0.028 (10)−0.010 (10)
C60.031 (8)0.111 (14)0.091 (14)−0.005 (8)0.008 (9)−0.028 (13)
C70.040 (7)0.049 (7)0.031 (8)0.014 (5)0.001 (6)−0.007 (7)
C80.040 (7)0.032 (6)0.030 (7)0.002 (5)−0.004 (6)−0.002 (5)
C90.048 (8)0.034 (6)0.041 (8)0.008 (6)0.006 (7)0.001 (6)
C100.022 (6)0.043 (6)0.029 (7)0.001 (4)0.004 (5)0.012 (6)
C110.051 (8)0.031 (6)0.046 (9)−0.021 (6)−0.002 (7)−0.004 (6)
C120.030 (6)0.042 (7)0.058 (9)−0.006 (6)0.016 (7)−0.025 (7)
C130.026 (7)0.039 (7)0.067 (10)0.000 (5)0.005 (6)−0.006 (7)
C140.059 (9)0.029 (7)0.056 (10)0.015 (6)0.005 (8)0.013 (7)
C150.052 (9)0.055 (8)0.053 (10)0.012 (7)−0.008 (8)−0.006 (7)
C160.059 (11)0.081 (11)0.048 (10)0.004 (9)0.015 (8)−0.010 (8)
Cu1—O31.872 (9)C5—H5A0.9600
Cu1—O11.905 (9)C5—H5B0.9600
Cu1—O41.920 (9)C5—H5C0.9600
Cu1—N11.925 (10)C6—H6A0.9600
Cl1—C101.685 (11)C6—H6B0.9600
Cl2—C121.712 (12)C6—H6C0.9600
N1—C71.328 (14)C7—C81.442 (17)
N1—C21.482 (16)C7—H70.9300
N2—C141.329 (17)C8—C131.384 (16)
N2—C161.473 (19)C8—C91.444 (17)
N2—C151.497 (18)C9—C101.395 (17)
O1—C11.333 (17)C10—C111.438 (17)
O2—C11.233 (16)C11—C121.333 (19)
O3—C91.306 (14)C11—H110.9300
O4—C141.225 (17)C12—C131.341 (19)
C1—C21.493 (17)C13—H130.9300
C2—C31.53 (2)C14—H140.9300
C2—H20.9800C15—H15A0.9600
C3—C41.53 (2)C15—H15B0.9600
C3—C61.53 (3)C15—H15C0.9600
C3—H30.9800C16—H16A0.9600
C4—C51.53 (2)C16—H16B0.9600
C4—H4A0.9700C16—H16C0.9600
C4—H4B0.9700
O3—Cu1—O1169.2 (4)C3—C6—H6A109.5
O3—Cu1—O492.5 (4)C3—C6—H6B109.5
O1—Cu1—O490.5 (3)H6A—C6—H6B109.5
O3—Cu1—N194.2 (4)C3—C6—H6C109.5
O1—Cu1—N182.7 (4)H6A—C6—H6C109.5
O4—Cu1—N1173.1 (4)H6B—C6—H6C109.5
C7—N1—C2120.0 (10)N1—C7—C8127.5 (11)
C7—N1—Cu1122.9 (8)N1—C7—H7116.3
C2—N1—Cu1115.7 (7)C8—C7—H7116.3
C14—N2—C16125.3 (13)C13—C8—C7118.2 (11)
C14—N2—C15119.5 (12)C13—C8—C9121.1 (12)
C16—N2—C15114.6 (11)C7—C8—C9120.7 (10)
C1—O1—Cu1117.4 (7)O3—C9—C10119.5 (11)
C9—O3—Cu1130.0 (9)O3—C9—C8123.1 (11)
C14—O4—Cu1119.5 (8)C10—C9—C8117.4 (10)
O2—C1—O1120.6 (13)C9—C10—C11116.8 (10)
O2—C1—C2123.3 (14)C9—C10—Cl1120.2 (9)
O1—C1—C2116.1 (11)C11—C10—Cl1122.8 (10)
N1—C2—C1106.7 (11)C12—C11—C10124.2 (12)
N1—C2—C3109.0 (10)C12—C11—H11117.9
C1—C2—C3112.3 (11)C10—C11—H11117.9
N1—C2—H2109.6C11—C12—C13119.5 (12)
C1—C2—H2109.6C11—C12—Cl2119.4 (11)
C3—C2—H2109.6C13—C12—Cl2121.1 (12)
C2—C3—C4111.3 (13)C12—C13—C8120.8 (13)
C2—C3—C6112.3 (11)C12—C13—H13119.6
C4—C3—C6107.6 (15)C8—C13—H13119.6
C2—C3—H3108.5O4—C14—N2126.3 (14)
C4—C3—H3108.5O4—C14—H14116.9
C6—C3—H3108.5N2—C14—H14116.9
C5—C4—C3114.9 (15)N2—C15—H15A109.5
C5—C4—H4A108.5N2—C15—H15B109.5
C3—C4—H4A108.5H15A—C15—H15B109.5
C5—C4—H4B108.5N2—C15—H15C109.5
C3—C4—H4B108.5H15A—C15—H15C109.5
H4A—C4—H4B107.5H15B—C15—H15C109.5
C4—C5—H5A109.5N2—C16—H16A109.5
C4—C5—H5B109.5N2—C16—H16B109.5
H5A—C5—H5B109.5H16A—C16—H16B109.5
C4—C5—H5C109.5N2—C16—H16C109.5
H5A—C5—H5C109.5H16A—C16—H16C109.5
H5B—C5—H5C109.5H16B—C16—H16C109.5
O3—Cu1—N1—C7−10.6 (11)C6—C3—C4—C5176.2 (14)
O1—Cu1—N1—C7159.0 (11)C2—N1—C7—C8−177.5 (12)
O3—Cu1—N1—C2−177.3 (8)Cu1—N1—C7—C816.4 (19)
O1—Cu1—N1—C2−7.7 (8)N1—C7—C8—C13171.3 (12)
O3—Cu1—O1—C174 (2)N1—C7—C8—C9−10 (2)
O4—Cu1—O1—C1180.0 (9)Cu1—O3—C9—C10−175.0 (8)
N1—Cu1—O1—C10.4 (9)Cu1—O3—C9—C84.8 (19)
O1—Cu1—O3—C9−72 (2)C13—C8—C9—O3177.1 (12)
O4—Cu1—O3—C9−177.7 (11)C7—C8—C9—O3−2(2)
N1—Cu1—O3—C90.7 (12)C13—C8—C9—C10−3.1 (18)
O3—Cu1—O4—C14−34.2 (11)C7—C8—C9—C10178.0 (11)
O1—Cu1—O4—C14156.2 (11)O3—C9—C10—C11180.0 (11)
Cu1—O1—C1—O2−170.2 (10)C8—C9—C10—C110.1 (16)
Cu1—O1—C1—C27.0 (14)O3—C9—C10—Cl14.9 (16)
C7—N1—C2—C1−154.7 (12)C8—C9—C10—Cl1−175.0 (9)
Cu1—N1—C2—C112.4 (12)C9—C10—C11—C123.9 (18)
C7—N1—C2—C383.7 (14)Cl1—C10—C11—C12178.8 (10)
Cu1—N1—C2—C3−109.1 (11)C10—C11—C12—C13−5(2)
O2—C1—C2—N1164.9 (13)C10—C11—C12—Cl2174.6 (9)
O1—C1—C2—N1−12.2 (15)C11—C12—C13—C82(2)
O2—C1—C2—C3−75.7 (17)Cl2—C12—C13—C8−177.8 (10)
O1—C1—C2—C3107.2 (13)C7—C8—C13—C12−178.7 (12)
N1—C2—C3—C4−169.2 (13)C9—C8—C13—C122(2)
C1—C2—C3—C472.8 (17)Cu1—O4—C14—N2177.0 (11)
N1—C2—C3—C670.2 (15)C16—N2—C14—O4−176.1 (15)
C1—C2—C3—C6−47.9 (17)C15—N2—C14—O4−5(2)
C2—C3—C4—C552.8 (19)
D—H···AD—HH···AD···AD—H···A
C15—H15B···O2i0.962.313.19 (2)150
Cu1—O31.872 (9)
Cu1—O11.905 (9)
Cu1—O41.920 (9)
Cu1—N11.925 (10)
O3—Cu1—O1169.2 (4)
O3—Cu1—O492.5 (4)
O1—Cu1—O490.5 (3)
O3—Cu1—N194.2 (4)
O1—Cu1—N182.7 (4)
O4—Cu1—N1173.1 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15B⋯O2i0.962.313.19 (2)150

Symmetry code: (i) .

  4 in total

1.  Space filling versus symmetry: two consecutive crystal-to-crystal phase transitions in a 2D network.

Authors:  Chunhua Hu; Ulli Englert
Journal:  Angew Chem Int Ed Engl       Date:  2006-05-19       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Supramolecular chemistry of halogens: complementary features of inorganic (M-X) and organic (C-X') halogens applied to M-X...X'-C halogen bond formation.

Authors:  Fiorenzo Zordan; Lee Brammer; Paul Sherwood
Journal:  J Am Chem Soc       Date:  2005-04-27       Impact factor: 15.419

4.  Synthesis, X-ray structure, single-crystal EPR and 1H NMR studies of a distorted square planar Cu(salEen)2(ClO4)2 complex in a novel bilayered architecture: salEen = N,N-diethylethylenesalicylidenamine.

Authors:  P S Subramanian; E Suresh; D Srinivas
Journal:  Inorg Chem       Date:  2000-05-15       Impact factor: 5.165

  4 in total

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