Literature DB >> 21202164

Three-dimensional hydrogen-bonded supra-molecular assembly in tetrakis-(1,3,5-triaza-7-phosphaadamantane)copper(I) chloride hexa-hydrate.

Alexander M Kirillov, Piotr Smoleński, M Fátima C Guedes da Silva, Maximilian N Kopylovich, Armando J L Pombeiro.   

Abstract

The structure of the title compound, [Cu(PTA)(4)]Cl·6H(2)O (n class="Chemical">PTA is 1,3,5-triaza-7-phosphaadamantane, C(6)H(12)N(3)P), is composed of discrete monomeric [Cu(PTA)(4)](+) cations, chloride anions and uncoordinated water mol-ecules. The Cu(I) atom exhibits tetra-hedral coordination geometry, involving four symmetry-equivalent P-bound PTA ligands. The structure is extended to a regular three-dimensional supra-molecular framework via numerous equivalent O-H⋯N hydrogen bonds between all solvent water mol-ecules (six per cation) and all PTA N atoms, thus simultaneously bridging each [Cu(PTA)(4)](+) cation with 12 neighbouring units in multiple directions. The study also shows that PTA can be a convenient ligand in crystal engineering for the construction of supra-molecular architectures.

Entities:  

Year:  2008        PMID: 21202164      PMCID: PMC2961253          DOI: 10.1107/S1600536808008179

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Kirillov et al. (2007 ▶, 2008 ▶); Karabach et al. (2006 ▶); Di Nicola et al. (2007 ▶). For a comprehensive review of PTA chemistry, see: Phillips et al. (2004 ▶). For n class="Chemical">PTA-derived polymeric networks, see: Lidrissi et al. (2005 ▶); Frost et al. (2006 ▶); Mohr et al. (2006 ▶). For related compounds, see: Forward et al. (1996 ▶); Darensbourg et al. (1997 ▶, 1999 ▶).

Experimental

Crystal data

[Cu(C6n class="Species">H12N3P)4]Cl·6H2O M = 835.71 Cubic, a = 19.795 (4) Å V = 7757 (3) Å3 Z = 8 Mo Kα radiation μ = 0.85 mm−1 T = 150 (2) K 0.20 × 0.17 × 0.12 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.848, T max = 0.905 3022 measured reflections 447 independent reflections 361 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.092 S = 1.08 447 reflections 28 parameters H-atom parameters constrained Δρmax = 0.75 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), PLATON (Spek, 2003 ▶) and Mern class="Chemical">cury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I. DOI: 10.1107/S1600536808008179/dn2329sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808008179/dn2329Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C6H12N3P)4]Cl·6H2OZ = 8
Mr = 835.71F000 = 3536
Cubic, Fd3mDx = 1.431 Mg m3
Hall symbol: -F 4vw 2vw 3Mo Kα radiation λ = 0.71069 Å
a = 19.795 (4) ÅCell parameters from 743 reflections
b = 19.795 (4) Åθ = 2.9–27.0º
c = 19.795 (4) ŵ = 0.85 mm1
α = 90ºT = 150 (2) K
β = 90ºPrism, colourless
γ = 90º0.20 × 0.17 × 0.12 mm
V = 7757 (3) Å3
Bruker APEXII CCD area-detector diffractometer447 independent reflections
Radiation source: fine-focus sealed tube361 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.049
T = 150(2) Kθmax = 27.0º
φ and ω scansθmin = 2.9º
Absorption correction: multi-scan(SADABS; Sheldrick, 2003)h = −24→23
Tmin = 0.848, Tmax = 0.905k = −16→11
3022 measured reflectionsl = −6→25
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.092  w = 1/[σ2(Fo2) + (0.0463P)2 + 19.2954P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
447 reflectionsΔρmax = 0.75 e Å3
28 parametersΔρmin = −0.32 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.25075 (10)0.15137 (15)0.25075 (10)0.0199 (6)
H1A0.22580.12280.28180.024*0.50
H1B0.28180.12280.22580.024*0.50
C20.33080 (15)0.24509 (11)0.24509 (11)0.0239 (7)
H2A0.36070.27260.27260.029*
H2B0.35870.21660.21660.029*
N10.29002 (8)0.20160 (12)0.29002 (8)0.0212 (6)
Cu10.12500.12500.12500.0134 (3)
P10.19090 (4)0.19090 (4)0.19090 (4)0.0156 (3)
Cl10.37500.37500.37500.0165 (5)
O100.37500.12300 (14)0.37500.0240 (7)
H100.35210.14800.35210.036*
U11U22U33U12U13U23
C10.0193 (8)0.0212 (14)0.0193 (8)−0.0005 (7)−0.0053 (11)−0.0005 (7)
C20.0193 (15)0.0262 (10)0.0262 (10)−0.0036 (8)−0.0036 (8)−0.0027 (12)
N10.0218 (8)0.0202 (13)0.0218 (8)−0.0019 (7)−0.0056 (10)−0.0019 (7)
Cu10.0134 (3)0.0134 (3)0.0134 (3)0.0000.0000.000
P10.0156 (3)0.0156 (3)0.0156 (3)−0.0009 (3)−0.0009 (3)−0.0009 (3)
Cl10.0165 (5)0.0165 (5)0.0165 (5)0.0000.0000.000
O100.0255 (10)0.0210 (16)0.0255 (10)0.000−0.0083 (12)0.000
C1—N11.482 (3)C2—H2A0.9700
C1—P11.849 (3)C2—H2B0.9700
C1—H1A0.9700Cu1—P12.2596 (13)
C1—H1B0.9700P1—C1i1.849 (3)
C2—N1i1.478 (2)O10—H100.8104
C2—N11.478 (2)
N1—C1—P1112.8 (2)P1—Cu1—P1iv109.5
N1—C1—H1A109.0P1iii—Cu1—P1iv109.5
P1—C1—H1B109.0P1—Cu1—P1v109.5
H1A—C1—H1B107.8P1iii—Cu1—P1v109.5
N1i—C2—N1113.7 (3)P1iv—Cu1—P1v109.5
N1—C2—H2A108.8C1ii—P1—C1i97.57 (12)
N1—C2—H2B108.8C1ii—P1—C197.57 (12)
H2A—C2—H2B107.7C1i—P1—C197.57 (12)
C2ii—N1—C2108.5 (3)C1ii—P1—Cu1119.70 (9)
C2ii—N1—C1111.21 (16)C1i—P1—Cu1119.70 (9)
C2—N1—C1111.21 (16)C1—P1—Cu1119.70 (9)
P1—Cu1—P1iii109.5
D—H···AD—HH···AD···AD—H···A
O10—H10···N10.812.042.843 (3)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O10—H10⋯N10.812.042.843 (3)174
  6 in total

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Authors:  Brian J Frost; Carolyn M Bautista; Rongcai Huang; Jason Shearer
Journal:  Inorg Chem       Date:  2006-05-01       Impact factor: 5.165

2.  Stable, water-soluble Pta-based Ru-Ag organometallic polymers.

Authors:  Chaker Lidrissi; Antonio Romerosa; Mustapha Saoud; Manuel Serrano-Ruiz; Luca Gonsalvi; Maurizio Peruzzini
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3.  Syntheses and Structural Characterization of Tetrahedral Four-Coordinate Gold(I) Complexes of 1,3,5-Triaza-7-phosphaadamantane. An Example of a Hydrogen-Bond-Directed Supramolecular Assembly.

Authors:  Jennifer M. Forward; Zerihun Assefa; Richard J. Staples; John P. Fackler
Journal:  Inorg Chem       Date:  1996-01-03       Impact factor: 5.165

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Supramolecular assemblies of trinuclear triangular copper(II) secondary building units through hydrogen bonds. Generation of different metal-organic frameworks, valuable catalysts for peroxidative oxidation of alkanes.

Authors:  Corrado Di Nicola; Yauhen Yu Karabach; Alexander M Kirillov; Magda Monari; Luciano Pandolfo; Claudio Pettinari; Armando J L Pombeiro
Journal:  Inorg Chem       Date:  2007-01-08       Impact factor: 5.165

6.  Self-assembled copper(II) coordination polymers derived from aminopolyalcohols and benzenepolycarboxylates: structural and magnetic properties.

Authors:  Alexander M Kirillov; Yauhen Y Karabach; Matti Haukka; M Fatima C Guedes da Silva; Joaquin Sanchiz; Maximilian N Kopylovich; Armando J L Pombeiro
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  6 in total

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