Literature DB >> 21202161

Redetermination of the borax structure from laboratory X-ray data at 145 K.

Graeme J Gainsford1, Tim Kemmitt, Caleb Higham.   

Abstract

THE TITLE COMPOUND, SODIUM TETRABORATE DECAHYDRATE (MINERAL NAME: borax), Na(2)[B(4)O(5)(OH)(4)]·8H(2)O, has been studied previously using X-ray [Morimoto (1956). Miner. J.2, 1-18] and neutron [Levy & Lisensky (1978). Acta Cryst. B34, 3502-3510] diffraction data. The structure contains tetra-borate anions [B(4)O(5)(OH)(4)](2-) with twofold rotation symmetry, which form hydrogen-bonded chains, and [Na(H(2)O)(6)] octa-hedra that form zigzag chains [Na(H(2)O)(4/2)(H(2)O)(2/1)]. The O-H bond distances obtained from the present redetermination at 145 K are shorter than those in the neutron study by an average of 0.127 (19) Å.

Entities:  

Year:  2008        PMID: 21202161      PMCID: PMC2961317          DOI: 10.1107/S1600536808010441

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For previous studies of the borax structure, see: Morimoto (1956 ▶); Levy & Lisenky (1978 ▶). For other structures listed in the Cambridge Structural Database (Allen, 2002 ▶) that contain the [B4O5(OH)4]2− anion, see: Wang et al. (2004 ▶); Pan et al. (2007 ▶). For related structures, see: Yi et al. (2005 ▶). For comparative studies of hydrogen bonds obtained from X-ray and neutron data, see: Allen (1986 ▶); Smrčok et al. (2006 ▶).

Experimental

Crystal data

Na2[B4O5(OH)4]·8H2O M = 381.38 Monoclinic, a = 11.8843 (5) Å b = 10.6026 (4) Å c = 12.2111 (5) Å β = 106.790 (2)° V = 1473.06 (10) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 145 (2) K 0.65 × 0.36 × 0.26 mm

Data collection

Bruker–Nonius APEX2 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2006 ▶) T min = 0.813, T max = 0.94 8429 measured reflections 2275 independent reflections 2137 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.076 S = 1.08 2275 reflections 147 parameters All H-atom parameters refined Δρmax = 0.37 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808010441/wm2174sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808010441/wm2174Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Na2[B4O5(OH)4]·8H2OF000 = 792
Mr = 381.38Dx = 1.720 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 6688 reflections
a = 11.8843 (5) Åθ = 2.6–31.9º
b = 10.6026 (4) ŵ = 0.22 mm1
c = 12.2111 (5) ÅT = 145 (2) K
β = 106.790 (2)ºPrism, colourless
V = 1473.06 (10) Å30.65 × 0.36 × 0.26 mm
Z = 4
Bruker–Nonius APEX2 CCD area-detector diffractometer2275 independent reflections
Radiation source: fine-focus sealed tube2137 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.018
Detector resolution: 8.192 pixels mm-1θmax = 33.2º
T = 145(2) Kθmin = 2.6º
φ and ω scansh = −17→16
Absorption correction: multi-scan(SADABS; Bruker, 2006)k = −15→15
Tmin = 0.813, Tmax = 0.94l = −16→17
8429 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.025All H-atom parameters refined
wR(F2) = 0.076  w = 1/[σ2(Fo2) + (0.0482P)2 + 0.3901P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.001
2275 reflectionsΔρmax = 0.37 e Å3
147 parametersΔρmin = −0.22 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Na10.00000.00000.00000.01676 (10)
Na20.00000.84795 (4)0.25000.01796 (11)
B10.08552 (6)0.34499 (6)0.21553 (5)0.01044 (13)
B20.09847 (6)0.45643 (6)0.39269 (6)0.01154 (13)
O10.00000.26659 (6)0.25000.01094 (13)
O20.15546 (4)0.41927 (4)0.31574 (4)0.01276 (11)
O30.01964 (4)0.43573 (4)0.12445 (4)0.01339 (11)
O40.16140 (4)0.27014 (5)0.16772 (4)0.01570 (11)
O50.16369 (4)0.51522 (5)0.49130 (4)0.01815 (12)
O60.12357 (5)0.84607 (5)0.44846 (5)0.01851 (12)
O70.12296 (5)0.00117 (5)0.19548 (5)0.01799 (12)
O80.11919 (5)0.16556 (5)0.46252 (5)0.02067 (12)
O90.11746 (5)0.70654 (6)0.17227 (5)0.02187 (12)
H40.7717 (12)0.2622 (11)0.2876 (12)0.032 (3)*
H50.1187 (13)0.4667 (13)0.0305 (12)0.040 (3)*
H6A0.3089 (13)0.3828 (14)0.0413 (12)0.042 (4)*
H6B0.8662 (14)0.2018 (16)0.4941 (13)0.051 (4)*
H7A0.3098 (13)0.4817 (11)0.3051 (12)0.030 (3)*
H7B0.1304 (12)0.0776 (14)0.2014 (12)0.039 (3)*
H8A0.9099 (12)0.1906 (13)0.1075 (11)0.036 (3)*
H8B0.8131 (12)0.1365 (12)0.0352 (11)0.034 (3)*
H9A0.4018 (13)0.1300 (15)0.3385 (12)0.046 (4)*
H9B0.6140 (15)0.2331 (15)0.1058 (14)0.053 (4)*
U11U22U33U12U13U23
Na10.0165 (2)0.01812 (19)0.0158 (2)0.00057 (13)0.00485 (15)0.00047 (13)
Na20.0179 (2)0.0201 (2)0.0176 (2)0.0000.00773 (16)0.000
B10.0100 (3)0.0121 (3)0.0096 (3)0.0012 (2)0.0035 (2)−0.00028 (19)
B20.0108 (3)0.0133 (3)0.0111 (3)−0.0014 (2)0.0040 (2)−0.0014 (2)
O10.0117 (3)0.0104 (3)0.0111 (3)0.0000.0037 (2)0.000
O20.0103 (2)0.0168 (2)0.0122 (2)−0.00223 (15)0.00493 (16)−0.00376 (15)
O30.0103 (2)0.0180 (2)0.0130 (2)0.00309 (15)0.00519 (16)0.00559 (15)
O40.0119 (2)0.0209 (2)0.0142 (2)0.00489 (17)0.00365 (17)−0.00434 (16)
O50.0132 (2)0.0275 (3)0.0150 (2)−0.00595 (18)0.00593 (19)−0.00949 (18)
O60.0146 (2)0.0219 (2)0.0186 (2)−0.00109 (18)0.00414 (19)0.00229 (18)
O70.0151 (3)0.0160 (2)0.0232 (3)0.00012 (17)0.0061 (2)0.00003 (17)
O80.0185 (3)0.0242 (3)0.0184 (3)0.00116 (19)0.0039 (2)0.00608 (19)
O90.0217 (3)0.0196 (2)0.0229 (3)−0.00047 (19)0.0041 (2)−0.00352 (19)
Na1—O8i2.3815 (6)Na2—O6ii2.4441 (6)
Na1—O8ii2.3815 (6)Na2—O62.4441 (6)
Na1—O6iii2.3979 (5)B1—O41.4451 (8)
Na1—O6iv2.3979 (5)B1—O11.4657 (7)
Na1—O7v2.4121 (6)B1—O21.4902 (8)
Na1—O72.4121 (6)B1—O31.5075 (8)
Na2—O7vi2.4041 (6)B2—O21.3655 (8)
Na2—O7vii2.4041 (6)B2—O3ii1.3757 (8)
Na2—O92.4214 (6)B2—O51.3784 (8)
Na2—O9ii2.4214 (6)
O8i—Na1—O8ii180.00 (2)O9—Na2—O6ii81.696 (19)
O8i—Na1—O6iii90.45 (2)O9ii—Na2—O6ii97.72 (2)
O8ii—Na1—O6iii89.55 (2)O7vi—Na2—O688.29 (2)
O8i—Na1—O6iv89.55 (2)O7vii—Na2—O692.34 (2)
O8ii—Na1—O6iv90.45 (2)O9—Na2—O697.72 (2)
O6iii—Na1—O6iv180.00 (3)O9ii—Na2—O681.70 (2)
O8i—Na1—O7v91.717 (19)O6ii—Na2—O6179.07 (3)
O8ii—Na1—O7v88.283 (19)O4—B1—O1111.72 (5)
O6iii—Na1—O7v89.177 (19)O4—B1—O2110.91 (5)
O6iv—Na1—O7v90.823 (19)O1—B1—O2109.42 (4)
O8i—Na1—O788.283 (19)O4—B1—O3107.71 (5)
O8ii—Na1—O791.717 (19)O1—B1—O3108.56 (5)
O6iii—Na1—O790.823 (19)O2—B1—O3108.43 (5)
O6iv—Na1—O789.177 (19)O2—B2—O3ii122.44 (6)
O7v—Na1—O7180.000 (16)O2—B2—O5117.78 (6)
O7vi—Na2—O7vii94.98 (3)O3ii—B2—O5119.78 (6)
O7vi—Na2—O9172.90 (2)B1ii—O1—B1110.90 (6)
O7vii—Na2—O981.05 (2)B2—O2—B1116.59 (5)
O7vi—Na2—O9ii81.05 (2)B2ii—O3—B1120.25 (5)
O7vii—Na2—O9ii172.90 (2)Na1vi—O6—Na290.952 (19)
O9—Na2—O9ii103.49 (3)Na2viii—O7—Na191.581 (19)
O7vi—Na2—O6ii92.34 (2)Na2viii—O7—H7B134.8 (10)
O7vii—Na2—O6ii88.29 (2)Na1—O7—H7B96.4 (10)
O4—B1—O1—B1ii−172.74 (6)O7vi—Na2—O6—Na1vi−0.355 (19)
O2—B1—O1—B1ii64.05 (4)O7vii—Na2—O6—Na1vi94.56 (2)
O3—B1—O1—B1ii−54.12 (3)O9—Na2—O6—Na1vi175.84 (2)
O3ii—B2—O2—B1−4.91 (9)O9ii—Na2—O6—Na1vi−81.56 (2)
O5—B2—O2—B1174.23 (5)O6ii—Na2—O6—Na1vi−132.911 (15)
O4—B1—O2—B2−156.88 (5)O8i—Na1—O7—Na2viii−89.93 (2)
O1—B1—O2—B2−33.19 (7)O8ii—Na1—O7—Na2viii90.07 (2)
O3—B1—O2—B285.06 (6)O6iii—Na1—O7—Na2viii179.640 (19)
O4—B1—O3—B2ii136.95 (6)O6iv—Na1—O7—Na2viii−0.360 (19)
O1—B1—O3—B2ii15.82 (7)O7v—Na1—O7—Na2viii−122 (44)
O2—B1—O3—B2ii−102.97 (6)
D—H···AD—HH···AD···AD—H···A
O5—H5ix···O3ix0.836 (15)1.895 (15)2.7300 (7)176.3 (15)
O4x—H4···O9xi0.828 (14)2.049 (14)2.8658 (8)168.4 (12)
O6—H6Axii···O5xiii0.868 (16)1.978 (16)2.8323 (8)167.9 (14)
O6xiv—H6B···O4x0.846 (16)2.040 (15)2.8624 (8)163.9 (16)
O7xii—H7A···O20.827 (16)1.989 (16)2.8135 (8)174.1 (12)
O7—H7B···O40.816 (15)2.135 (15)2.9233 (8)162.3 (14)
O8x—H8A···O1xv0.866 (13)1.936 (13)2.7865 (6)167.0 (14)
O8x—H8B···O5xvi0.855 (15)2.341 (14)3.1320 (8)154.2 (12)
O9—H9Axii···O30.843 (16)2.253 (16)3.0894 (8)171.7 (15)
O9—H9Bxvii···O8iii0.849 (17)2.069 (16)2.9034 (8)167.4 (15)
Table 1

Selected bond lengths (Å)

Na1—O8i2.3815 (6)
Na1—O6ii2.3979 (5)
Na1—O72.4121 (6)
Na2—O7iii2.4041 (6)
Na2—O92.4214 (6)
Na2—O62.4441 (6)
B1—O41.4451 (8)
B1—O11.4657 (7)
B1—O21.4902 (8)
B1—O31.5075 (8)
B2—O21.3655 (8)
B2—O3i1.3757 (8)
B2—O51.3784 (8)

Symmetry codes: (i) ; (ii) ; (iii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5iv⋯O3iv0.836 (15)1.895 (15)2.7300 (7)176.3 (15)
O4v—H4⋯O9vi0.828 (14)2.049 (14)2.8658 (8)168.4 (12)
O6—H6Avii⋯O5viii0.868 (16)1.978 (16)2.8323 (8)167.9 (14)
O6ix—H6B⋯O4v0.846 (16)2.040 (15)2.8624 (8)163.9 (16)
O7vii—H7A⋯O20.827 (16)1.989 (16)2.8135 (8)174.1 (12)
O7—H7B⋯O40.816 (15)2.135 (15)2.9233 (8)162.3 (14)
O8v—H8A⋯O1x0.866 (13)1.936 (13)2.7865 (6)167.0 (14)
O8v—H8B⋯O5xi0.855 (15)2.341 (14)3.1320 (8)154.2 (12)
O9—H9Avii⋯O30.843 (16)2.253 (16)3.0894 (8)171.7 (15)
O9—H9Bxii⋯O8xiii0.849 (17)2.069 (16)2.9034 (8)167.4 (15)

Symmetry codes: (iv) ; (v) ; (vi) ; (vii) ; (viii) ; (ix) ; (x) ; (xi) ; (xii) ; (xiii) .

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