Literature DB >> 21202149

2-(4,6-Dimethyl-pyrimidin-2-ylsulfan-yl)-N-phenyl-acetamide.

Li-Xin Gao1, Guang-Jun Fang, Jin-Guo Feng, Dong Liang, Wei Wang.   

Abstract

In the title compound, C(14)H(15)N(3)OS, the phenyl ring is almost perpendicular to the dimethyl-pyrimidine group, with a dihedral angle of 88.1 (3)°. The Csp(2)-S bond of 1.759 (3) Å is significantly shorter than the Csp(3)-S bond of 1.795 (3) Å due to the p-π conjugation.

Entities:  

Year:  2008        PMID: 21202149      PMCID: PMC2960928          DOI: 10.1107/S1600536808007940

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Koike et al. (1999 ▶); Liang et al. (2008 ▶); Wang et al. (2004 ▶, 2005 ▶).

Experimental

Crystal data

C14H15N3OS M = 273.35 Orthorhombic, a = 9.1691 (17) Å b = 15.485 (3) Å c = 20.798 (4) Å V = 2952.9 (9) Å3 Z = 8 Mo Kα radiation μ = 0.21 mm−1 T = 571 (2) K 0.28 × 0.24 × 0.14 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.942, T max = 0.971 14235 measured reflections 2606 independent reflections 1494 reflections with I > 2σ(I) R int = 0.073

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.116 S = 1.01 2606 reflections 175 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.16 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SMART; data reduction: SAINT (Bruker, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808007940/at2550sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808007940/at2550Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H15N3OSF000 = 1152
Mr = 273.35Dx = 1.230 Mg m3
Orthorhombic, PbcaMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2395 reflections
a = 9.1691 (17) Åθ = 2.8–22.1º
b = 15.485 (3) ŵ = 0.22 mm1
c = 20.798 (4) ÅT = 571 (2) K
V = 2952.9 (9) Å3Block, colourless
Z = 80.28 × 0.24 × 0.14 mm
Bruker SMART CCD area-detector diffractometer2606 independent reflections
Radiation source: fine-focus sealed tube1494 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.073
T = 571(2) Kθmax = 25.0º
φ and ω scansθmin = 2.0º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −8→10
Tmin = 0.942, Tmax = 0.971k = −18→18
14235 measured reflectionsl = −22→24
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.040  w = 1/[σ2(Fo2) + (0.044P)2 + 0.9487P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.116(Δ/σ)max = 0.001
S = 1.01Δρmax = 0.17 e Å3
2606 reflectionsΔρmin = −0.16 e Å3
175 parametersExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0155 (11)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.10446 (8)0.82693 (5)0.31856 (3)0.0566 (3)
O10.08455 (18)0.69624 (13)0.20969 (9)0.0658 (6)
N10.1800 (2)0.67674 (14)0.37036 (10)0.0540 (6)
C80.2078 (3)0.70685 (17)0.23078 (12)0.0498 (7)
C10.0880 (3)0.74194 (16)0.37418 (12)0.0480 (7)
N30.3186 (2)0.65184 (14)0.22060 (10)0.0539 (6)
H3A0.40150.66690.23640.065*
C70.2494 (3)0.78653 (16)0.26898 (13)0.0541 (7)
H7A0.27930.83160.23940.065*
H7B0.33240.77280.29610.065*
C90.3164 (3)0.57251 (18)0.18732 (13)0.0538 (7)
N2−0.0195 (3)0.75292 (15)0.41631 (11)0.0665 (7)
C20.1643 (3)0.61439 (19)0.41447 (15)0.0643 (8)
C140.4321 (4)0.51737 (19)0.19623 (14)0.0703 (9)
H140.50790.53320.22350.084*
C100.2056 (3)0.5472 (2)0.14672 (15)0.0779 (10)
H100.12660.58370.13960.093*
C30.0557 (4)0.6186 (2)0.45961 (14)0.0707 (9)
H30.04400.57480.48980.085*
C4−0.0353 (4)0.6890 (2)0.45926 (15)0.0774 (10)
C130.4371 (5)0.4388 (2)0.16514 (18)0.0922 (12)
H130.51670.40250.17120.111*
C120.3259 (6)0.4141 (2)0.12546 (18)0.0939 (12)
H120.32890.36080.10480.113*
C60.2714 (4)0.5413 (2)0.41157 (19)0.1032 (13)
H6A0.27490.51880.36860.155*
H6B0.24150.49650.44060.155*
H6C0.36630.56180.42360.155*
C110.2113 (5)0.4679 (3)0.11651 (17)0.0930 (12)
H110.13540.45120.08960.112*
C5−0.1579 (6)0.6993 (3)0.5073 (2)0.147 (2)
H5A−0.15250.75550.52660.221*
H5B−0.14910.65590.54000.221*
H5C−0.24980.69290.48570.221*
U11U22U33U12U13U23
S10.0512 (4)0.0549 (4)0.0636 (5)0.0038 (4)0.0011 (4)0.0005 (4)
O10.0307 (10)0.0895 (15)0.0773 (13)−0.0027 (10)−0.0043 (9)−0.0168 (11)
N10.0526 (14)0.0541 (13)0.0554 (14)0.0043 (12)−0.0011 (11)−0.0041 (12)
C80.0318 (15)0.0690 (17)0.0486 (16)−0.0061 (14)0.0067 (12)0.0041 (14)
C10.0472 (16)0.0529 (16)0.0438 (15)−0.0019 (14)−0.0039 (13)−0.0085 (12)
N30.0309 (12)0.0714 (16)0.0595 (14)−0.0028 (11)0.0009 (10)−0.0078 (12)
C70.0362 (14)0.0618 (16)0.0641 (18)−0.0076 (13)−0.0001 (13)0.0049 (14)
C90.0445 (16)0.0656 (18)0.0514 (17)−0.0071 (15)0.0112 (14)0.0026 (15)
N20.0706 (17)0.0670 (16)0.0620 (16)0.0121 (14)0.0178 (14)0.0002 (13)
C20.072 (2)0.0547 (18)0.066 (2)0.0035 (16)−0.0021 (18)−0.0043 (16)
C140.075 (2)0.069 (2)0.067 (2)−0.0001 (18)−0.0013 (17)0.0073 (16)
C100.059 (2)0.101 (3)0.073 (2)−0.0015 (18)0.0026 (17)−0.026 (2)
C30.092 (2)0.0622 (19)0.0583 (19)−0.0038 (19)0.0064 (18)0.0034 (15)
C40.089 (2)0.078 (2)0.065 (2)0.009 (2)0.0241 (19)0.0003 (18)
C130.124 (4)0.066 (2)0.087 (3)0.019 (2)0.012 (2)0.007 (2)
C120.137 (4)0.071 (2)0.074 (3)−0.017 (3)0.028 (3)−0.013 (2)
C60.113 (3)0.075 (2)0.122 (3)0.031 (2)0.010 (3)0.016 (2)
C110.091 (3)0.109 (3)0.079 (3)−0.018 (3)0.010 (2)−0.030 (2)
C50.175 (5)0.138 (4)0.129 (4)0.045 (3)0.100 (3)0.029 (3)
S1—C11.759 (3)C14—H140.9300
S1—C71.795 (3)C10—C111.380 (4)
O1—C81.223 (3)C10—H100.9300
N1—C11.318 (3)C3—C41.373 (4)
N1—C21.340 (3)C3—H30.9300
C8—N31.343 (3)C4—C51.512 (5)
C8—C71.516 (3)C13—C121.367 (5)
C1—N21.330 (3)C13—H130.9300
N3—C91.410 (3)C12—C111.354 (5)
N3—H3A0.8600C12—H120.9300
C7—H7A0.9700C6—H6A0.9600
C7—H7B0.9700C6—H6B0.9600
C9—C141.375 (4)C6—H6C0.9600
C9—C101.378 (4)C11—H110.9300
N2—C41.341 (4)C5—H5A0.9600
C2—C31.370 (4)C5—H5B0.9600
C2—C61.500 (4)C5—H5C0.9600
C14—C131.378 (4)
C1—S1—C7100.40 (13)C11—C10—H10119.9
C1—N1—C2116.2 (2)C2—C3—C4118.4 (3)
O1—C8—N3123.9 (2)C2—C3—H3120.8
O1—C8—C7122.0 (2)C4—C3—H3120.8
N3—C8—C7114.1 (2)N2—C4—C3121.6 (3)
N1—C1—N2127.7 (2)N2—C4—C5116.3 (3)
N1—C1—S1118.6 (2)C3—C4—C5122.1 (3)
N2—C1—S1113.7 (2)C12—C13—C14120.4 (4)
C8—N3—C9128.2 (2)C12—C13—H13119.8
C8—N3—H3A115.9C14—C13—H13119.8
C9—N3—H3A115.9C11—C12—C13119.3 (3)
C8—C7—S1113.47 (17)C11—C12—H12120.4
C8—C7—H7A108.9C13—C12—H12120.4
S1—C7—H7A108.9C2—C6—H6A109.5
C8—C7—H7B108.9C2—C6—H6B109.5
S1—C7—H7B108.9H6A—C6—H6B109.5
H7A—C7—H7B107.7C2—C6—H6C109.5
C14—C9—C10118.4 (3)H6A—C6—H6C109.5
C14—C9—N3117.6 (3)H6B—C6—H6C109.5
C10—C9—N3124.0 (3)C12—C11—C10121.0 (4)
C1—N2—C4115.1 (2)C12—C11—H11119.5
N1—C2—C3120.9 (3)C10—C11—H11119.5
N1—C2—C6116.5 (3)C4—C5—H5A109.5
C3—C2—C6122.6 (3)C4—C5—H5B109.5
C9—C14—C13120.7 (3)H5A—C5—H5B109.5
C9—C14—H14119.6C4—C5—H5C109.5
C13—C14—H14119.6H5A—C5—H5C109.5
C9—C10—C11120.3 (3)H5B—C5—H5C109.5
C9—C10—H10119.9
C2—N1—C1—N2−0.7 (4)C10—C9—C14—C130.1 (4)
C2—N1—C1—S1178.98 (19)N3—C9—C14—C13−179.9 (3)
C7—S1—C1—N13.4 (2)C14—C9—C10—C110.6 (5)
C7—S1—C1—N2−176.94 (19)N3—C9—C10—C11−179.3 (3)
O1—C8—N3—C9−2.5 (4)N1—C2—C3—C4−1.0 (4)
C7—C8—N3—C9179.8 (2)C6—C2—C3—C4178.7 (3)
O1—C8—C7—S134.4 (3)C1—N2—C4—C31.1 (4)
N3—C8—C7—S1−147.93 (19)C1—N2—C4—C5−179.3 (3)
C1—S1—C7—C866.6 (2)C2—C3—C4—N2−0.3 (5)
C8—N3—C9—C14−164.3 (3)C2—C3—C4—C5−179.9 (4)
C8—N3—C9—C1015.6 (4)C9—C14—C13—C12−0.8 (5)
N1—C1—N2—C4−0.6 (4)C14—C13—C12—C110.6 (5)
S1—C1—N2—C4179.7 (2)C13—C12—C11—C100.1 (6)
C1—N1—C2—C31.5 (4)C9—C10—C11—C12−0.8 (5)
C1—N1—C2—C6−178.3 (3)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(4,6-Dimethyl-pyrimidin-2-ylsulfan-yl)-N-(4-methyl-pyridin-2-yl)acetamide.

Authors:  Dong Liang; Li-Xing Gao; Yan Gao; Jing Xu; Wei Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06
  2 in total
  2 in total

1.  Crystal structures of 2-[(4,6-di-amino-pyrimidin-2-yl)sulfan-yl]-N-(3-nitro-phen-yl)acetamide monohydrate and N-(2-chloro-phen-yl)-2-[(4,6-di-amino-pyrimidin-2-yl)sulfan-yl]acetamide.

Authors:  S Subasri; Ajay Kumar Timiri; Nayan Sinha Barji; Venkatesan Jayaprakash; Viswanathan Vijayan; Devadasan Velmurugan
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-07-22

2.  Crystal structures of 2-[(4,6-di-amino-pyrimidin-2-yl)sulfan-yl]-N-(naphthalen-1-yl)acetamide and 2-[(4,6-di-amino-pyrimidin-2-yl)sulfan-yl]-N-(4-fluoro-phen-yl)acetamide.

Authors:  S Subasri; Timiri Ajay Kumar; Barij Nayan Sinha; Venkatesan Jayaprakash; Vijayan Viswanathan; Devadasan Velmurugan
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-01-31
  2 in total

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