| Literature DB >> 21202109 |
Haojin Cheng, Brandon Djukic, Laura E Harrington, James F Britten, Martin T Lemaire.
Abstract
The title compound, C(11)H(9)N(3)OS, was prepared to investigate the coordination chemistry of thio-phene-containing ligands as precursors to inter-esting metallopolymers. The mol-ecule is nearly planar. The angle between the thio-phene and pyridine rings is 8.63 (4)° and features the expected trans configuration about the imine bond. The structure is stabilized by a weak inter-molecular N-H⋯O hydrogen bond. The distance between centroids of adjacent thio-phene rings [3.67 (8) Å] suggests the presence of π-π inter-actions.Entities:
Year: 2008 PMID: 21202109 PMCID: PMC2961063 DOI: 10.1107/S1600536808004960
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H9N3OS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9922 reflections |
| θ = 2.9–39.5º | |
| µ = 0.29 mm−1 | |
| β = 103.2300 (10)º | Block, colourless |
| 0.40 × 0.30 × 0.20 mm | |
| Bruker APEXII CCD area-detector diffractometer | 6449 independent reflections |
| Radiation source: fine-focus sealed tube | 5355 reflections with |
| Monochromator: graphite | |
| θmax = 40.5º | |
| φ and ω scans | θmin = 1.8º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 32428 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max = 0.001 | |
| 6449 reflections | Δρmax = 0.48 e Å−3 |
| 181 parameters | Δρmin = −0.44 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.463771 (16) | 0.23464 (2) | 0.454041 (19) | 0.02568 (5) | |
| O1 | 0.85993 (5) | 0.78873 (6) | 0.23484 (5) | 0.02601 (10) | |
| C1 | 0.58685 (6) | 0.33166 (8) | 0.52713 (7) | 0.02334 (11) | |
| H1 | 0.6218 (12) | 0.3226 (15) | 0.6255 (14) | 0.038 (3)* | |
| N1 | 0.76136 (5) | 0.59050 (6) | 0.38381 (5) | 0.01975 (9) | |
| N2 | 0.86362 (5) | 0.66685 (7) | 0.43407 (6) | 0.02150 (10) | |
| H2 | 0.8983 (11) | 0.6677 (15) | 0.5159 (14) | 0.041 (3)* | |
| C2 | 0.62431 (5) | 0.41837 (7) | 0.43437 (6) | 0.01909 (9) | |
| C3 | 0.54986 (6) | 0.40473 (8) | 0.30101 (6) | 0.02346 (11) | |
| H3 | 0.5598 (11) | 0.4576 (15) | 0.2219 (14) | 0.038 (3)* | |
| N3 | 1.06794 (5) | 0.77731 (7) | 0.55311 (6) | 0.02522 (11) | |
| C4 | 0.45955 (6) | 0.30881 (8) | 0.29705 (7) | 0.02585 (12) | |
| H4 | 0.4001 (12) | 0.2786 (15) | 0.2207 (14) | 0.039 (3)* | |
| C5 | 0.72865 (5) | 0.50925 (7) | 0.47217 (6) | 0.02064 (10) | |
| H5 | 0.7741 (11) | 0.5050 (14) | 0.5620 (12) | 0.032 (3)* | |
| C6 | 0.90780 (5) | 0.75931 (7) | 0.35325 (6) | 0.01910 (10) | |
| C7 | 1.02436 (5) | 0.82307 (7) | 0.42481 (6) | 0.01914 (10) | |
| C8 | 1.08096 (6) | 0.92324 (8) | 0.35862 (7) | 0.02498 (12) | |
| H8 | 1.0462 (10) | 0.9482 (14) | 0.2685 (12) | 0.030 (3)* | |
| C9 | 1.18816 (7) | 0.98075 (9) | 0.42927 (9) | 0.02855 (13) | |
| H9 | 1.2275 (12) | 1.0512 (16) | 0.3916 (13) | 0.040 (3)* | |
| C10 | 1.23335 (6) | 0.93561 (9) | 0.56184 (9) | 0.02901 (13) | |
| H10 | 1.3068 (12) | 0.9703 (17) | 0.6115 (13) | 0.042 (4)* | |
| C11 | 1.17048 (6) | 0.83398 (10) | 0.61907 (8) | 0.02998 (14) | |
| H11 | 1.2008 (13) | 0.7924 (18) | 0.7155 (16) | 0.050 (4)* |
| S1 | 0.02498 (8) | 0.02603 (8) | 0.02706 (9) | −0.00757 (5) | 0.00809 (6) | −0.00236 (5) |
| O1 | 0.0262 (2) | 0.0318 (2) | 0.01804 (19) | −0.00370 (18) | 0.00077 (16) | 0.00251 (17) |
| C1 | 0.0225 (2) | 0.0263 (3) | 0.0206 (2) | −0.0040 (2) | 0.00363 (19) | 0.0013 (2) |
| N1 | 0.01699 (19) | 0.0214 (2) | 0.0198 (2) | −0.00233 (16) | 0.00210 (15) | −0.00098 (16) |
| N2 | 0.0187 (2) | 0.0259 (2) | 0.0182 (2) | −0.00545 (17) | 0.00069 (16) | 0.00143 (17) |
| C2 | 0.0182 (2) | 0.0192 (2) | 0.0193 (2) | −0.00147 (17) | 0.00317 (17) | −0.00077 (17) |
| C3 | 0.0258 (3) | 0.0244 (3) | 0.0189 (2) | −0.0053 (2) | 0.00249 (19) | −0.00152 (19) |
| N3 | 0.0194 (2) | 0.0311 (3) | 0.0230 (2) | −0.00334 (19) | 0.00019 (17) | 0.0037 (2) |
| C4 | 0.0265 (3) | 0.0271 (3) | 0.0223 (3) | −0.0072 (2) | 0.0022 (2) | −0.0045 (2) |
| C5 | 0.0191 (2) | 0.0224 (2) | 0.0193 (2) | −0.00278 (18) | 0.00200 (17) | −0.00012 (18) |
| C6 | 0.0181 (2) | 0.0202 (2) | 0.0184 (2) | −0.00070 (17) | 0.00300 (17) | −0.00088 (17) |
| C7 | 0.0173 (2) | 0.0199 (2) | 0.0199 (2) | −0.00059 (17) | 0.00357 (17) | −0.00080 (17) |
| C8 | 0.0246 (3) | 0.0252 (3) | 0.0248 (3) | −0.0050 (2) | 0.0050 (2) | 0.0016 (2) |
| C9 | 0.0240 (3) | 0.0273 (3) | 0.0346 (3) | −0.0067 (2) | 0.0072 (2) | 0.0005 (2) |
| C10 | 0.0191 (2) | 0.0302 (3) | 0.0355 (3) | −0.0043 (2) | 0.0017 (2) | −0.0033 (3) |
| C11 | 0.0210 (3) | 0.0380 (4) | 0.0271 (3) | −0.0042 (2) | −0.0023 (2) | 0.0025 (3) |
| S1—C1 | 1.7067 (7) | N3—C11 | 1.3347 (9) |
| S1—C4 | 1.7133 (8) | N3—C7 | 1.3446 (9) |
| O1—C6 | 1.2274 (8) | C4—H4 | 0.953 (14) |
| C1—C2 | 1.3724 (9) | C5—H5 | 0.941 (12) |
| C1—H1 | 0.987 (13) | C6—C7 | 1.5052 (8) |
| N1—C5 | 1.2841 (8) | C7—C8 | 1.3873 (9) |
| N1—N2 | 1.3764 (7) | C8—C9 | 1.3944 (10) |
| N2—C6 | 1.3559 (8) | C8—H8 | 0.935 (12) |
| N2—H2 | 0.832 (14) | C9—C10 | 1.3838 (12) |
| C2—C3 | 1.4306 (9) | C9—H9 | 0.922 (14) |
| C2—C5 | 1.4523 (8) | C10—C11 | 1.3895 (11) |
| C3—C4 | 1.3655 (10) | C10—H10 | 0.944 (14) |
| C3—H3 | 0.963 (14) | C11—H11 | 1.029 (15) |
| H4···N1i | 2.591 (14) | H5···O1ii | 2.609 (12) |
| C1—S1—C4 | 92.11 (3) | C2—C5—H5 | 119.0 (8) |
| C2—C1—S1 | 111.98 (5) | O1—C6—N2 | 124.80 (6) |
| C2—C1—H1 | 127.7 (8) | O1—C6—C7 | 122.86 (6) |
| S1—C1—H1 | 120.3 (8) | N2—C6—C7 | 112.34 (5) |
| C5—N1—N2 | 114.13 (5) | N3—C7—C8 | 123.49 (6) |
| C6—N2—N1 | 120.83 (5) | N3—C7—C6 | 116.28 (5) |
| C6—N2—H2 | 115.1 (9) | C8—C7—C6 | 120.23 (6) |
| N1—N2—H2 | 123.7 (9) | C7—C8—C9 | 118.31 (7) |
| C1—C2—C3 | 111.77 (6) | C7—C8—H8 | 118.7 (7) |
| C1—C2—C5 | 122.07 (6) | C9—C8—H8 | 123.0 (7) |
| C3—C2—C5 | 126.15 (6) | C10—C9—C8 | 118.74 (7) |
| C4—C3—C2 | 112.51 (6) | C10—C9—H9 | 119.4 (8) |
| C4—C3—H3 | 122.5 (8) | C8—C9—H9 | 121.8 (8) |
| C2—C3—H3 | 124.9 (8) | C9—C10—C11 | 118.70 (7) |
| C11—N3—C7 | 117.26 (6) | C9—C10—H10 | 120.8 (8) |
| C3—C4—S1 | 111.64 (5) | C11—C10—H10 | 120.5 (8) |
| C3—C4—H4 | 128.8 (8) | N3—C11—C10 | 123.50 (7) |
| S1—C4—H4 | 119.6 (8) | N3—C11—H11 | 113.8 (9) |
| N1—C5—C2 | 120.94 (6) | C10—C11—H11 | 122.7 (8) |
| N1—C5—H5 | 120.0 (8) | ||
| C4—S1—C1—C2 | −0.15 (6) | C11—N3—C7—C8 | 0.86 (11) |
| C5—N1—N2—C6 | −178.74 (6) | C11—N3—C7—C6 | −179.13 (7) |
| S1—C1—C2—C3 | 0.21 (8) | O1—C6—C7—N3 | −177.94 (7) |
| S1—C1—C2—C5 | −178.92 (5) | N2—C6—C7—N3 | 1.78 (8) |
| C1—C2—C3—C4 | −0.17 (9) | O1—C6—C7—C8 | 2.06 (10) |
| C5—C2—C3—C4 | 178.92 (7) | N2—C6—C7—C8 | −178.21 (6) |
| C2—C3—C4—S1 | 0.05 (8) | N3—C7—C8—C9 | −0.69 (11) |
| C1—S1—C4—C3 | 0.05 (6) | C6—C7—C8—C9 | 179.30 (6) |
| N2—N1—C5—C2 | −178.20 (6) | C7—C8—C9—C10 | 0.02 (11) |
| C1—C2—C5—N1 | −179.36 (6) | C8—C9—C10—C11 | 0.42 (12) |
| C3—C2—C5—N1 | 1.64 (11) | C7—N3—C11—C10 | −0.38 (13) |
| N1—N2—C6—O1 | 3.95 (11) | C9—C10—C11—N3 | −0.25 (13) |
| N1—N2—C6—C7 | −175.76 (5) |
| H··· | ||||
| N2—H2···O1ii | 0.83 (1) | 2.38 (1) | 3.0717 (8) | 140 (1) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯O1i | 0.83 (1) | 2.38 (1) | 3.0717 (8) | 140 (1) |
Symmetry code: (i) .