| Literature DB >> 21202108 |
Massimo Bambagiotti-Alberti, Gianluca Bartolucci, Bruno Bruni, Silvia Coran, Massimo Di Vaira.
Abstract
The crystal structure of the title compound, C(18)H(13)NO(4), the oxidized form of the drug aminaftone used in venous disease therapy, is characterized by the presence of ribbons of hydrogen-bonded mol-ecules parallel to the [111] crystallographic direction and by stacking inter-actions between rings [centroid-centroid distance between quinone rings = 3.684 (3) Å and between amino-benzoate rings = 4.157 (3) Å] along the ribbons.Entities:
Year: 2008 PMID: 21202108 PMCID: PMC2961024 DOI: 10.1107/S1600536808005308
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H13NO4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Cu |
| Cell parameters from 3411 reflections | |
| θ = 9.6–53.4º | |
| µ = 0.85 mm−1 | |
| α = 101.618 (6)º | |
| β = 110.770 (7)º | Flat prism, red |
| γ = 89.019 (6)º | 0.60 × 0.20 × 0.05 mm |
| Oxford Diffraction Xcalibur PX Ultra CCD diffractometer | 2453 independent reflections |
| Radiation source: Fine–focus sealed tube | 1845 reflections with |
| Monochromator: Oxford Diffraction Enhance ULTRA assembly | |
| Detector resolution: 8.1241 pixels mm-1 | θmax = 72.4º |
| θmin = 4.5º | |
| ω scans | |
| Absorption correction: multi-scan(ABSPACK; Oxford Diffraction, 2006) | |
| 6339 measured reflections |
| Refinement on | Secondary atom site location: Difmap |
| Least-squares matrix: Full | Hydrogen site location: Difmap |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max < 0.001 | |
| 2453 reflections | Δρmax = 0.17 e Å−3 |
| 215 parameters | Δρmin = −0.23 e Å−3 |
| Primary atom site location: Direct | Extinction correction: None |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.6680 (2) | 1.03157 (16) | 0.34314 (16) | 0.0361 (4) | |
| C2 | 0.8411 (2) | 1.01124 (16) | 0.32984 (16) | 0.0373 (4) | |
| H2 | 0.8613 | 0.9234 | 0.2787 | 0.045* | |
| C3 | 0.9857 (3) | 1.11583 (17) | 0.38923 (16) | 0.0392 (4) | |
| H3 | 1.1038 | 1.0996 | 0.3791 | 0.047* | |
| C4 | 0.9568 (3) | 1.24645 (17) | 0.46471 (16) | 0.0398 (4) | |
| N | 1.0987 (3) | 1.35138 (17) | 0.52199 (17) | 0.0508 (4) | |
| H1N | 1.083 (3) | 1.425 (3) | 0.582 (2) | 0.061* | |
| H2N | 1.225 (4) | 1.326 (2) | 0.542 (2) | 0.061* | |
| C5 | 0.7833 (3) | 1.26644 (17) | 0.47801 (17) | 0.0449 (5) | |
| H5 | 0.7624 | 1.3542 | 0.5289 | 0.054* | |
| C6 | 0.6405 (3) | 1.16127 (18) | 0.41876 (17) | 0.0431 (4) | |
| H6 | 0.5226 | 1.1770 | 0.4294 | 0.052* | |
| C7 | 0.5122 (3) | 0.92331 (17) | 0.27898 (16) | 0.0384 (4) | |
| O1 | 0.57285 (17) | 0.79775 (12) | 0.22176 (13) | 0.0464 (4) | |
| O2 | 0.35157 (19) | 0.93363 (13) | 0.27039 (14) | 0.0498 (4) | |
| C8 | 0.4401 (2) | 0.68767 (16) | 0.14533 (17) | 0.0377 (4) | |
| C9 | 0.4125 (2) | 0.58405 (18) | 0.22396 (17) | 0.0386 (4) | |
| O3 | 0.48719 (18) | 0.60587 (14) | 0.34797 (12) | 0.0497 (4) | |
| C10 | 0.2922 (2) | 0.45428 (17) | 0.14241 (18) | 0.0388 (4) | |
| C11 | 0.2663 (3) | 0.3494 (2) | 0.2090 (2) | 0.0498 (5) | |
| H11 | 0.3227 | 0.3623 | 0.3060 | 0.060* | |
| C12 | 0.1572 (3) | 0.2263 (2) | 0.1317 (2) | 0.0602 (6) | |
| H12 | 0.1414 | 0.1536 | 0.1761 | 0.072* | |
| C13 | 0.0713 (3) | 0.2085 (2) | −0.0091 (2) | 0.0552 (5) | |
| H13 | −0.0036 | 0.1239 | −0.0607 | 0.066* | |
| C14 | 0.0936 (3) | 0.31287 (18) | −0.0752 (2) | 0.0466 (5) | |
| H14 | 0.0330 | 0.3008 | −0.1719 | 0.056* | |
| C15 | 0.2056 (2) | 0.43605 (16) | 0.00057 (17) | 0.0376 (4) | |
| O4 | 0.1557 (2) | 0.53290 (14) | −0.19534 (13) | 0.0593 (4) | |
| C16 | 0.2311 (2) | 0.54714 (17) | −0.07165 (17) | 0.0405 (4) | |
| C17 | 0.3535 (2) | 0.67684 (17) | 0.01047 (18) | 0.0393 (4) | |
| C18 | 0.3757 (3) | 0.7879 (2) | −0.0642 (2) | 0.0516 (5) | |
| H181 | 0.4980 | 0.8401 | −0.0144 | 0.077* | |
| H182 | 0.2753 | 0.8541 | −0.0699 | 0.077* | |
| H183 | 0.3683 | 0.7421 | −0.1570 | 0.077* |
| C1 | 0.0393 (10) | 0.0345 (8) | 0.0337 (8) | 0.0027 (8) | 0.0114 (7) | 0.0083 (6) |
| C2 | 0.0443 (10) | 0.0325 (7) | 0.0329 (8) | 0.0035 (8) | 0.0118 (7) | 0.0059 (6) |
| C3 | 0.0385 (10) | 0.0398 (8) | 0.0357 (8) | 0.0033 (8) | 0.0088 (7) | 0.0085 (7) |
| C4 | 0.0435 (11) | 0.0382 (8) | 0.0318 (8) | −0.0001 (8) | 0.0065 (7) | 0.0066 (6) |
| N | 0.0484 (10) | 0.0413 (8) | 0.0487 (9) | −0.0045 (8) | 0.0063 (7) | −0.0016 (7) |
| C5 | 0.0529 (12) | 0.0360 (8) | 0.0417 (10) | 0.0019 (9) | 0.0175 (8) | −0.0017 (7) |
| C6 | 0.0449 (11) | 0.0407 (9) | 0.0436 (9) | 0.0035 (8) | 0.0176 (8) | 0.0053 (7) |
| C7 | 0.0443 (11) | 0.0347 (8) | 0.0362 (8) | 0.0032 (8) | 0.0136 (7) | 0.0091 (6) |
| O1 | 0.0370 (7) | 0.0339 (6) | 0.0615 (8) | −0.0006 (5) | 0.0156 (6) | −0.0013 (5) |
| O2 | 0.0410 (8) | 0.0444 (7) | 0.0622 (8) | 0.0016 (6) | 0.0202 (6) | 0.0040 (6) |
| C8 | 0.0326 (9) | 0.0313 (7) | 0.0480 (10) | 0.0026 (7) | 0.0164 (7) | 0.0021 (7) |
| C9 | 0.0322 (9) | 0.0423 (8) | 0.0402 (9) | 0.0065 (8) | 0.0137 (7) | 0.0050 (7) |
| O3 | 0.0438 (8) | 0.0612 (8) | 0.0397 (7) | 0.0022 (6) | 0.0124 (5) | 0.0057 (6) |
| C10 | 0.0331 (9) | 0.0366 (8) | 0.0476 (10) | 0.0031 (8) | 0.0153 (7) | 0.0092 (7) |
| C11 | 0.0484 (12) | 0.0500 (10) | 0.0583 (11) | 0.0063 (9) | 0.0248 (9) | 0.0173 (9) |
| C12 | 0.0629 (14) | 0.0438 (10) | 0.0877 (16) | −0.0002 (10) | 0.0405 (12) | 0.0192 (10) |
| C13 | 0.0464 (12) | 0.0389 (9) | 0.0817 (15) | −0.0021 (9) | 0.0316 (10) | −0.0003 (9) |
| C14 | 0.0366 (10) | 0.0391 (9) | 0.0578 (11) | 0.0037 (8) | 0.0157 (8) | −0.0017 (8) |
| C15 | 0.0320 (9) | 0.0330 (8) | 0.0472 (10) | 0.0068 (7) | 0.0168 (7) | 0.0032 (7) |
| O4 | 0.0774 (11) | 0.0530 (7) | 0.0385 (7) | 0.0067 (7) | 0.0124 (6) | 0.0053 (6) |
| C16 | 0.0386 (10) | 0.0385 (8) | 0.0414 (10) | 0.0089 (8) | 0.0121 (7) | 0.0064 (7) |
| C17 | 0.0368 (10) | 0.0355 (8) | 0.0477 (10) | 0.0073 (8) | 0.0173 (8) | 0.0095 (7) |
| C18 | 0.0535 (12) | 0.0465 (10) | 0.0626 (12) | 0.0078 (9) | 0.0245 (9) | 0.0222 (9) |
| C1—C2 | 1.383 (3) | C9—O3 | 1.213 (2) |
| C1—C6 | 1.398 (2) | C9—C10 | 1.480 (2) |
| C1—C7 | 1.463 (2) | C10—C15 | 1.392 (2) |
| C2—C3 | 1.383 (2) | C10—C11 | 1.397 (2) |
| C2—H2 | 0.9500 | C11—C12 | 1.387 (3) |
| C3—C4 | 1.407 (2) | C11—H11 | 0.9500 |
| C3—H3 | 0.9500 | C12—C13 | 1.382 (3) |
| C4—N | 1.371 (2) | C12—H12 | 0.9500 |
| C4—C5 | 1.385 (3) | C13—C14 | 1.381 (3) |
| N—H1N | 0.89 (2) | C13—H13 | 0.9500 |
| N—H2N | 0.95 (3) | C14—C15 | 1.394 (2) |
| C5—C6 | 1.378 (2) | C14—H14 | 0.9500 |
| C5—H5 | 0.9500 | C15—C16 | 1.488 (2) |
| C6—H6 | 0.9500 | O4—C16 | 1.215 (2) |
| C7—O2 | 1.199 (2) | C16—C17 | 1.487 (2) |
| C7—O1 | 1.388 (2) | C17—C18 | 1.498 (2) |
| O1—C8 | 1.3827 (19) | C18—H181 | 0.9800 |
| C8—C17 | 1.333 (2) | C18—H182 | 0.9800 |
| C8—C9 | 1.485 (2) | C18—H183 | 0.9800 |
| C2—C1—C6 | 118.63 (15) | C15—C10—C11 | 120.01 (16) |
| C2—C1—C7 | 122.37 (15) | C15—C10—C9 | 120.57 (14) |
| C6—C1—C7 | 118.99 (16) | C11—C10—C9 | 119.42 (16) |
| C1—C2—C3 | 121.52 (15) | C12—C11—C10 | 119.25 (19) |
| C1—C2—H2 | 119.2 | C12—C11—H11 | 120.4 |
| C3—C2—H2 | 119.2 | C10—C11—H11 | 120.4 |
| C2—C3—C4 | 119.58 (17) | C13—C12—C11 | 120.62 (17) |
| C2—C3—H3 | 120.2 | C13—C12—H12 | 119.7 |
| C4—C3—H3 | 120.2 | C11—C12—H12 | 119.7 |
| N—C4—C5 | 121.40 (16) | C14—C13—C12 | 120.40 (17) |
| N—C4—C3 | 119.83 (18) | C14—C13—H13 | 119.8 |
| C5—C4—C3 | 118.76 (15) | C12—C13—H13 | 119.8 |
| C4—N—H1N | 116.7 (15) | C13—C14—C15 | 119.68 (18) |
| C4—N—H2N | 119.0 (13) | C13—C14—H14 | 120.2 |
| H1N—N—H2N | 114 (2) | C15—C14—H14 | 120.2 |
| C6—C5—C4 | 121.14 (16) | C10—C15—C14 | 120.02 (16) |
| C6—C5—H5 | 119.4 | C10—C15—C16 | 120.62 (14) |
| C4—C5—H5 | 119.4 | C14—C15—C16 | 119.37 (16) |
| C5—C6—C1 | 120.36 (17) | O4—C16—C17 | 120.01 (15) |
| C5—C6—H6 | 119.8 | O4—C16—C15 | 121.32 (15) |
| C1—C6—H6 | 119.8 | C17—C16—C15 | 118.67 (14) |
| O2—C7—O1 | 121.27 (15) | C8—C17—C16 | 118.88 (14) |
| O2—C7—C1 | 128.52 (16) | C8—C17—C18 | 123.35 (16) |
| O1—C7—C1 | 110.20 (15) | C16—C17—C18 | 117.75 (15) |
| C8—O1—C7 | 118.14 (13) | C17—C18—H181 | 109.5 |
| C17—C8—O1 | 120.33 (14) | C17—C18—H182 | 109.5 |
| C17—C8—C9 | 124.77 (14) | H181—C18—H182 | 109.5 |
| O1—C8—C9 | 114.83 (14) | C17—C18—H183 | 109.5 |
| O3—C9—C10 | 122.82 (15) | H181—C18—H183 | 109.5 |
| O3—C9—C8 | 120.89 (15) | H182—C18—H183 | 109.5 |
| C10—C9—C8 | 116.28 (14) | ||
| C6—C1—C2—C3 | −0.1 (2) | C8—C9—C10—C11 | 177.37 (17) |
| C7—C1—C2—C3 | 178.82 (14) | C15—C10—C11—C12 | 1.4 (3) |
| C1—C2—C3—C4 | −0.2 (2) | C9—C10—C11—C12 | −178.40 (17) |
| C2—C3—C4—N | −178.97 (15) | C10—C11—C12—C13 | −1.5 (3) |
| C2—C3—C4—C5 | 0.3 (2) | C11—C12—C13—C14 | 0.3 (3) |
| N—C4—C5—C6 | 179.17 (15) | C12—C13—C14—C15 | 0.8 (3) |
| C3—C4—C5—C6 | −0.1 (3) | C11—C10—C15—C14 | −0.3 (3) |
| C4—C5—C6—C1 | −0.2 (3) | C9—C10—C15—C14 | 179.56 (16) |
| C2—C1—C6—C5 | 0.3 (2) | C11—C10—C15—C16 | 179.70 (16) |
| C7—C1—C6—C5 | −178.65 (15) | C9—C10—C15—C16 | −0.5 (3) |
| C2—C1—C7—O2 | −171.14 (16) | C13—C14—C15—C10 | −0.9 (3) |
| C6—C1—C7—O2 | 7.8 (3) | C13—C14—C15—C16 | 179.15 (17) |
| C2—C1—C7—O1 | 7.5 (2) | C10—C15—C16—O4 | −179.69 (17) |
| C6—C1—C7—O1 | −173.56 (14) | C14—C15—C16—O4 | 0.3 (3) |
| O2—C7—O1—C8 | 4.8 (2) | C10—C15—C16—C17 | 1.0 (3) |
| C1—C7—O1—C8 | −174.01 (13) | C14—C15—C16—C17 | −179.01 (16) |
| C7—O1—C8—C17 | 89.9 (2) | O1—C8—C17—C16 | 171.84 (14) |
| C7—O1—C8—C9 | −92.86 (17) | C9—C8—C17—C16 | −5.1 (3) |
| C17—C8—C9—O3 | −175.24 (17) | O1—C8—C17—C18 | −7.0 (3) |
| O1—C8—C9—O3 | 7.7 (2) | C9—C8—C17—C18 | 176.11 (16) |
| C17—C8—C9—C10 | 5.5 (3) | O4—C16—C17—C8 | −177.60 (17) |
| O1—C8—C9—C10 | −171.56 (14) | C15—C16—C17—C8 | 1.7 (2) |
| O3—C9—C10—C15 | 178.30 (17) | O4—C16—C17—C18 | 1.3 (3) |
| C8—C9—C10—C15 | −2.5 (2) | C15—C16—C17—C18 | −179.42 (16) |
| O3—C9—C10—C11 | −1.9 (3) |
| H··· | ||||
| N—H2N···O3i | 0.95 (3) | 2.13 (3) | 2.960 (2) | 145.6 (19) |
| N—H1N···O4ii | 0.89 (2) | 2.25 (2) | 3.045 (2) | 147.3 (19) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N—H2 | 0.95 (3) | 2.13 (3) | 2.960 (2) | 145.6 (19) |
| N—H1 | 0.89 (2) | 2.25 (2) | 3.045 (2) | 147.3 (19) |
Symmetry codes: (i) ; (ii) .