Literature DB >> 21202108

3-Methyl-1,4-dioxo-1,4-dihydro-naphthalen-2-yl 4-amino-benzoate.

Massimo Bambagiotti-Alberti, Gianluca Bartolucci, Bruno Bruni, Silvia Coran, Massimo Di Vaira.   

Abstract

The crystal structure of the title compound, C(18)H(13)NO(4), the oxidized form of the drug aminaftone used in venous disease therapy, is characterized by the presence of ribbons of hydrogen-bonded mol-ecules parallel to the [111] crystallographic direction and by stacking inter-actions between rings [centroid-centroid distance between quinone rings = 3.684 (3) Å and between amino-benzoate rings = 4.157 (3) Å] along the ribbons.

Entities:  

Year:  2008        PMID: 21202108      PMCID: PMC2961024          DOI: 10.1107/S1600536808005308

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: De Anna et al. (1989 ▶); Martinez et al. (2005 ▶).

Experimental

Crystal data

C18H13NO4 M = 307.29 Triclinic, a = 7.6217 (6) Å b = 9.6142 (7) Å c = 10.6456 (7) Å α = 101.618 (6)° β = 110.770 (7)° γ = 89.019 (6)° V = 713.18 (10) Å3 Z = 2 Cu Kα radiation μ = 0.85 mm−1 T = 170 (2) K 0.60 × 0.20 × 0.05 mm

Data collection

Oxford Diffraction Xcalibur PX Ultra CCD diffractometer Absorption correction: multi-scan (ABSPACK; Oxford Diffraction, 2006 ▶) T min = 0.501, T max = 1.000 (expected range = 0.480–0.959) 6339 measured reflections 2453 independent reflections 1845 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.142 S = 1.12 2453 reflections 215 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlisPro CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlisPro CCD; data reduction: CrysAlisPro RED (Oxford Diffraction, 2006 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97 and PARST (Nardelli, 1995 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808005308/rk2078sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808005308/rk2078Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H13NO4Z = 2
Mr = 307.29F000 = 320
Triclinic, P1Dx = 1.431 Mg m3
Hall symbol: -P 1Cu Kα radiation λ = 1.54180 Å
a = 7.6217 (6) ÅCell parameters from 3411 reflections
b = 9.6142 (7) Åθ = 9.6–53.4º
c = 10.6456 (7) ŵ = 0.85 mm1
α = 101.618 (6)ºT = 170 (2) K
β = 110.770 (7)ºFlat prism, red
γ = 89.019 (6)º0.60 × 0.20 × 0.05 mm
V = 713.18 (10) Å3
Oxford Diffraction Xcalibur PX Ultra CCD diffractometer2453 independent reflections
Radiation source: Fine–focus sealed tube1845 reflections with I > 2σ(I)
Monochromator: Oxford Diffraction Enhance ULTRA assemblyRint = 0.022
Detector resolution: 8.1241 pixels mm-1θmax = 72.4º
T = 170(2) Kθmin = 4.5º
ω scansh = −9→9
Absorption correction: multi-scan(ABSPACK; Oxford Diffraction, 2006)k = −11→11
Tmin = 0.501, Tmax = 1.000l = −12→12
6339 measured reflections
Refinement on F2Secondary atom site location: Difmap
Least-squares matrix: FullHydrogen site location: Difmap
R[F2 > 2σ(F2)] = 0.041H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.142  w = 1/[σ2(Fo2) + (0.0941P)2 + 0.0064P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max < 0.001
2453 reflectionsΔρmax = 0.17 e Å3
215 parametersΔρmin = −0.23 e Å3
Primary atom site location: DirectExtinction correction: None
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6680 (2)1.03157 (16)0.34314 (16)0.0361 (4)
C20.8411 (2)1.01124 (16)0.32984 (16)0.0373 (4)
H20.86130.92340.27870.045*
C30.9857 (3)1.11583 (17)0.38923 (16)0.0392 (4)
H31.10381.09960.37910.047*
C40.9568 (3)1.24645 (17)0.46471 (16)0.0398 (4)
N1.0987 (3)1.35138 (17)0.52199 (17)0.0508 (4)
H1N1.083 (3)1.425 (3)0.582 (2)0.061*
H2N1.225 (4)1.326 (2)0.542 (2)0.061*
C50.7833 (3)1.26644 (17)0.47801 (17)0.0449 (5)
H50.76241.35420.52890.054*
C60.6405 (3)1.16127 (18)0.41876 (17)0.0431 (4)
H60.52261.17700.42940.052*
C70.5122 (3)0.92331 (17)0.27898 (16)0.0384 (4)
O10.57285 (17)0.79775 (12)0.22176 (13)0.0464 (4)
O20.35157 (19)0.93363 (13)0.27039 (14)0.0498 (4)
C80.4401 (2)0.68767 (16)0.14533 (17)0.0377 (4)
C90.4125 (2)0.58405 (18)0.22396 (17)0.0386 (4)
O30.48719 (18)0.60587 (14)0.34797 (12)0.0497 (4)
C100.2922 (2)0.45428 (17)0.14241 (18)0.0388 (4)
C110.2663 (3)0.3494 (2)0.2090 (2)0.0498 (5)
H110.32270.36230.30600.060*
C120.1572 (3)0.2263 (2)0.1317 (2)0.0602 (6)
H120.14140.15360.17610.072*
C130.0713 (3)0.2085 (2)−0.0091 (2)0.0552 (5)
H13−0.00360.1239−0.06070.066*
C140.0936 (3)0.31287 (18)−0.0752 (2)0.0466 (5)
H140.03300.3008−0.17190.056*
C150.2056 (2)0.43605 (16)0.00057 (17)0.0376 (4)
O40.1557 (2)0.53290 (14)−0.19534 (13)0.0593 (4)
C160.2311 (2)0.54714 (17)−0.07165 (17)0.0405 (4)
C170.3535 (2)0.67684 (17)0.01047 (18)0.0393 (4)
C180.3757 (3)0.7879 (2)−0.0642 (2)0.0516 (5)
H1810.49800.8401−0.01440.077*
H1820.27530.8541−0.06990.077*
H1830.36830.7421−0.15700.077*
U11U22U33U12U13U23
C10.0393 (10)0.0345 (8)0.0337 (8)0.0027 (8)0.0114 (7)0.0083 (6)
C20.0443 (10)0.0325 (7)0.0329 (8)0.0035 (8)0.0118 (7)0.0059 (6)
C30.0385 (10)0.0398 (8)0.0357 (8)0.0033 (8)0.0088 (7)0.0085 (7)
C40.0435 (11)0.0382 (8)0.0318 (8)−0.0001 (8)0.0065 (7)0.0066 (6)
N0.0484 (10)0.0413 (8)0.0487 (9)−0.0045 (8)0.0063 (7)−0.0016 (7)
C50.0529 (12)0.0360 (8)0.0417 (10)0.0019 (9)0.0175 (8)−0.0017 (7)
C60.0449 (11)0.0407 (9)0.0436 (9)0.0035 (8)0.0176 (8)0.0053 (7)
C70.0443 (11)0.0347 (8)0.0362 (8)0.0032 (8)0.0136 (7)0.0091 (6)
O10.0370 (7)0.0339 (6)0.0615 (8)−0.0006 (5)0.0156 (6)−0.0013 (5)
O20.0410 (8)0.0444 (7)0.0622 (8)0.0016 (6)0.0202 (6)0.0040 (6)
C80.0326 (9)0.0313 (7)0.0480 (10)0.0026 (7)0.0164 (7)0.0021 (7)
C90.0322 (9)0.0423 (8)0.0402 (9)0.0065 (8)0.0137 (7)0.0050 (7)
O30.0438 (8)0.0612 (8)0.0397 (7)0.0022 (6)0.0124 (5)0.0057 (6)
C100.0331 (9)0.0366 (8)0.0476 (10)0.0031 (8)0.0153 (7)0.0092 (7)
C110.0484 (12)0.0500 (10)0.0583 (11)0.0063 (9)0.0248 (9)0.0173 (9)
C120.0629 (14)0.0438 (10)0.0877 (16)−0.0002 (10)0.0405 (12)0.0192 (10)
C130.0464 (12)0.0389 (9)0.0817 (15)−0.0021 (9)0.0316 (10)−0.0003 (9)
C140.0366 (10)0.0391 (9)0.0578 (11)0.0037 (8)0.0157 (8)−0.0017 (8)
C150.0320 (9)0.0330 (8)0.0472 (10)0.0068 (7)0.0168 (7)0.0032 (7)
O40.0774 (11)0.0530 (7)0.0385 (7)0.0067 (7)0.0124 (6)0.0053 (6)
C160.0386 (10)0.0385 (8)0.0414 (10)0.0089 (8)0.0121 (7)0.0064 (7)
C170.0368 (10)0.0355 (8)0.0477 (10)0.0073 (8)0.0173 (8)0.0095 (7)
C180.0535 (12)0.0465 (10)0.0626 (12)0.0078 (9)0.0245 (9)0.0222 (9)
C1—C21.383 (3)C9—O31.213 (2)
C1—C61.398 (2)C9—C101.480 (2)
C1—C71.463 (2)C10—C151.392 (2)
C2—C31.383 (2)C10—C111.397 (2)
C2—H20.9500C11—C121.387 (3)
C3—C41.407 (2)C11—H110.9500
C3—H30.9500C12—C131.382 (3)
C4—N1.371 (2)C12—H120.9500
C4—C51.385 (3)C13—C141.381 (3)
N—H1N0.89 (2)C13—H130.9500
N—H2N0.95 (3)C14—C151.394 (2)
C5—C61.378 (2)C14—H140.9500
C5—H50.9500C15—C161.488 (2)
C6—H60.9500O4—C161.215 (2)
C7—O21.199 (2)C16—C171.487 (2)
C7—O11.388 (2)C17—C181.498 (2)
O1—C81.3827 (19)C18—H1810.9800
C8—C171.333 (2)C18—H1820.9800
C8—C91.485 (2)C18—H1830.9800
C2—C1—C6118.63 (15)C15—C10—C11120.01 (16)
C2—C1—C7122.37 (15)C15—C10—C9120.57 (14)
C6—C1—C7118.99 (16)C11—C10—C9119.42 (16)
C1—C2—C3121.52 (15)C12—C11—C10119.25 (19)
C1—C2—H2119.2C12—C11—H11120.4
C3—C2—H2119.2C10—C11—H11120.4
C2—C3—C4119.58 (17)C13—C12—C11120.62 (17)
C2—C3—H3120.2C13—C12—H12119.7
C4—C3—H3120.2C11—C12—H12119.7
N—C4—C5121.40 (16)C14—C13—C12120.40 (17)
N—C4—C3119.83 (18)C14—C13—H13119.8
C5—C4—C3118.76 (15)C12—C13—H13119.8
C4—N—H1N116.7 (15)C13—C14—C15119.68 (18)
C4—N—H2N119.0 (13)C13—C14—H14120.2
H1N—N—H2N114 (2)C15—C14—H14120.2
C6—C5—C4121.14 (16)C10—C15—C14120.02 (16)
C6—C5—H5119.4C10—C15—C16120.62 (14)
C4—C5—H5119.4C14—C15—C16119.37 (16)
C5—C6—C1120.36 (17)O4—C16—C17120.01 (15)
C5—C6—H6119.8O4—C16—C15121.32 (15)
C1—C6—H6119.8C17—C16—C15118.67 (14)
O2—C7—O1121.27 (15)C8—C17—C16118.88 (14)
O2—C7—C1128.52 (16)C8—C17—C18123.35 (16)
O1—C7—C1110.20 (15)C16—C17—C18117.75 (15)
C8—O1—C7118.14 (13)C17—C18—H181109.5
C17—C8—O1120.33 (14)C17—C18—H182109.5
C17—C8—C9124.77 (14)H181—C18—H182109.5
O1—C8—C9114.83 (14)C17—C18—H183109.5
O3—C9—C10122.82 (15)H181—C18—H183109.5
O3—C9—C8120.89 (15)H182—C18—H183109.5
C10—C9—C8116.28 (14)
C6—C1—C2—C3−0.1 (2)C8—C9—C10—C11177.37 (17)
C7—C1—C2—C3178.82 (14)C15—C10—C11—C121.4 (3)
C1—C2—C3—C4−0.2 (2)C9—C10—C11—C12−178.40 (17)
C2—C3—C4—N−178.97 (15)C10—C11—C12—C13−1.5 (3)
C2—C3—C4—C50.3 (2)C11—C12—C13—C140.3 (3)
N—C4—C5—C6179.17 (15)C12—C13—C14—C150.8 (3)
C3—C4—C5—C6−0.1 (3)C11—C10—C15—C14−0.3 (3)
C4—C5—C6—C1−0.2 (3)C9—C10—C15—C14179.56 (16)
C2—C1—C6—C50.3 (2)C11—C10—C15—C16179.70 (16)
C7—C1—C6—C5−178.65 (15)C9—C10—C15—C16−0.5 (3)
C2—C1—C7—O2−171.14 (16)C13—C14—C15—C10−0.9 (3)
C6—C1—C7—O27.8 (3)C13—C14—C15—C16179.15 (17)
C2—C1—C7—O17.5 (2)C10—C15—C16—O4−179.69 (17)
C6—C1—C7—O1−173.56 (14)C14—C15—C16—O40.3 (3)
O2—C7—O1—C84.8 (2)C10—C15—C16—C171.0 (3)
C1—C7—O1—C8−174.01 (13)C14—C15—C16—C17−179.01 (16)
C7—O1—C8—C1789.9 (2)O1—C8—C17—C16171.84 (14)
C7—O1—C8—C9−92.86 (17)C9—C8—C17—C16−5.1 (3)
C17—C8—C9—O3−175.24 (17)O1—C8—C17—C18−7.0 (3)
O1—C8—C9—O37.7 (2)C9—C8—C17—C18176.11 (16)
C17—C8—C9—C105.5 (3)O4—C16—C17—C8−177.60 (17)
O1—C8—C9—C10−171.56 (14)C15—C16—C17—C81.7 (2)
O3—C9—C10—C15178.30 (17)O4—C16—C17—C181.3 (3)
C8—C9—C10—C15−2.5 (2)C15—C16—C17—C18−179.42 (16)
O3—C9—C10—C11−1.9 (3)
D—H···AD—HH···AD···AD—H···A
N—H2N···O3i0.95 (3)2.13 (3)2.960 (2)145.6 (19)
N—H1N···O4ii0.89 (2)2.25 (2)3.045 (2)147.3 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N—H2N⋯O3i0.95 (3)2.13 (3)2.960 (2)145.6 (19)
N—H1N⋯O4ii0.89 (2)2.25 (2)3.045 (2)147.3 (19)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  [Effects of therapy with aminaftone on chronic venous and lymphatic stasis].

Authors:  D De Anna; F Mari; S Intini; V Gasbarro; A Sortini; E Pozza; R Marzola; U Taddeo; F Bresadola; I Donini
Journal:  Minerva Cardioangiol       Date:  1989-05       Impact factor: 1.347

Review 3.  Phlebotonics for venous insufficiency.

Authors:  M J Martinez; X Bonfill; R M Moreno; E Vargas; D Capellà
Journal:  Cochrane Database Syst Rev       Date:  2005-07-20
  3 in total

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