Literature DB >> 21202087

1-Benzyl-3-(2-furo-yl)thio-urea.

Hiram Pérez, Yvonne Mascarenhas, Osvaldo Estévez-Hernández, Sauli Santos, Julio Duque.   

Abstract

In the title compound, C(13)H(12)N(2)O(2)S, the dihedral angle between the two aromatic ring planes is 87.52 (12)°. The mol-ecule shows an intra-molecular N-H⋯O n class="Chemical">hydrogen bond. The crystal structure is stabilized by inter-molecular N-H⋯S and C-H⋯O hydrogen bonding.

Entities:  

Year:  2008        PMID: 21202087      PMCID: PMC2960941          DOI: 10.1107/S1600536808006181

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Estévez-Hernández et al. (2007 ▶); Otazo et al. (2001 ▶). For related structures, see: Arslan et al. (2004 ▶); Khawar Rauf et al. (2007 ▶). For the synthesis, see: Otazo et al. (2001 ▶).

Experimental

Crystal data

C13H12N2O2S M = 260.31 Tetragonal, a = 9.445 (3) Å c = 27.107 (6) Å V = 2418.2 (12) Å3 Z = 8 Mo Kα radiation μ = 0.26 mm−1 T = 150 (2) K 0.3 × 0.1 × 0.08 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: none 12492 measured reflections 2120 independent reflections 1922 reflections with I > 2σ(I) R int = 0.092

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.085 S = 1.06 2120 reflections 163 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: Flack (1983 ▶), 802 Friedel pairs Flack parameter: −0.16 (10) Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808006181/xu2401sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808006181/xu2401Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H12N2O2SZ = 8
Mr = 260.31F000 = 1088
Tetragonal, P41212Dx = 1.43 Mg m3
Hall symbol: P 4abw 2nwMelting point: 402.5 K
a = 9.445 (3) ÅMo Kα radiation λ = 0.71073 Å
b = 9.445 (3) ÅCell parameters from 9761 reflections
c = 27.107 (6) Åθ = 2.9–26.0º
α = 90ºµ = 0.26 mm1
β = 90ºT = 150 (2) K
γ = 90ºBlock, colourless
V = 2418.2 (12) Å30.3 × 0.1 × 0.08 mm
Nonius KappaCCD diffractometerRint = 0.092
ω scansθmax = 25.0º
Absorption correction: noneθmin = 3.7º
12492 measured reflectionsh = −11→9
2120 independent reflectionsk = −8→11
1922 reflections with I > 2σ(I)l = −32→24
Refinement on F2  w = 1/[σ2(Fo2) + (0.0402P)2 + 0.4478P] where P = (Fo2 + 2Fc2)/3
Least-squares matrix: full(Δ/σ)max < 0.001
R[F2 > 2σ(F2)] = 0.035Δρmax = 0.17 e Å3
wR(F2) = 0.085Δρmin = −0.19 e Å3
S = 1.06Extinction correction: none
2120 reflectionsAbsolute structure: Flack (1983), 802 Friedel pairs
163 parametersFlack parameter: −0.16 (10)
H-atom parameters constrained
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.7270 (2)0.4402 (2)0.16180 (8)0.0311 (6)
H1A0.71040.34940.17910.037*
H1B0.63510.49040.15970.037*
C20.7259 (2)0.4740 (2)0.07225 (7)0.0251 (5)
C30.8761 (2)0.3236 (2)0.01767 (8)0.0260 (5)
C40.9003 (2)0.2913 (2)−0.03448 (8)0.0270 (5)
C50.9858 (2)0.1962 (2)−0.05694 (8)0.0316 (5)
H51.04860.1313−0.04150.038*
C60.9623 (2)0.2131 (2)−0.10836 (8)0.0336 (6)
H61.00690.1616−0.13410.04*
C70.8651 (2)0.3157 (2)−0.11361 (8)0.0330 (6)
H70.82960.3482−0.14440.04*
C80.8284 (2)0.5288 (2)0.19216 (8)0.0272 (5)
C90.9223 (2)0.6243 (2)0.17099 (9)0.0320 (5)
H90.92870.63130.13610.038*
C101.0065 (3)0.7093 (3)0.20046 (10)0.0389 (6)
H101.07060.77390.18550.047*
C110.9987 (3)0.7014 (3)0.25126 (10)0.0388 (6)
H111.05630.76060.27130.047*
C120.9063 (3)0.6063 (3)0.27252 (9)0.0388 (6)
H120.90010.60.30740.047*
C130.8222 (2)0.5198 (3)0.24330 (8)0.0333 (6)
H130.75980.45390.25840.04*
O10.94160 (17)0.26029 (17)0.04999 (6)0.0314 (4)
O20.82422 (16)0.36671 (15)−0.06877 (5)0.0309 (4)
N10.7763 (2)0.41033 (19)0.11201 (6)0.0275 (4)
H10.84320.34650.10810.033*
N20.77589 (19)0.42680 (19)0.02701 (6)0.0262 (4)
H20.7390.46790.00090.031*
S10.60657 (6)0.60581 (6)0.072955 (19)0.03259 (18)
U11U22U33U12U13U23
C10.0337 (12)0.0375 (13)0.0220 (11)−0.0027 (11)0.0039 (9)0.0008 (10)
C20.0253 (11)0.0269 (11)0.0231 (11)−0.0052 (9)0.0015 (9)−0.0028 (9)
C30.0227 (11)0.0265 (11)0.0289 (12)−0.0054 (10)0.0013 (9)−0.0005 (9)
C40.0289 (12)0.0274 (12)0.0248 (11)−0.0019 (10)−0.0021 (9)0.0017 (9)
C50.0310 (13)0.0319 (12)0.0318 (12)0.0041 (10)0.0005 (10)−0.0019 (10)
C60.0396 (14)0.0353 (13)0.0260 (12)0.0033 (11)0.0041 (10)−0.0041 (10)
C70.0411 (14)0.0380 (13)0.0200 (11)0.0024 (11)0.0016 (10)−0.0032 (10)
C80.0304 (12)0.0266 (12)0.0246 (11)0.0077 (10)0.0000 (9)−0.0018 (9)
C90.0354 (13)0.0324 (12)0.0283 (12)0.0043 (11)0.0009 (10)0.0006 (11)
C100.0381 (14)0.0358 (13)0.0427 (15)−0.0012 (12)−0.0005 (11)−0.0003 (11)
C110.0399 (14)0.0381 (13)0.0385 (14)0.0034 (12)−0.0058 (12)−0.0074 (12)
C120.0451 (15)0.0452 (15)0.0261 (12)0.0097 (13)−0.0045 (11)−0.0035 (11)
C130.0376 (13)0.0347 (13)0.0277 (13)0.0048 (11)0.0023 (11)0.0020 (10)
O10.0327 (9)0.0354 (9)0.0262 (8)0.0035 (7)−0.0005 (7)0.0009 (7)
O20.0354 (9)0.0319 (9)0.0253 (8)0.0060 (7)−0.0011 (7)−0.0017 (7)
N10.0303 (10)0.0287 (10)0.0236 (9)0.0027 (8)0.0016 (8)−0.0010 (8)
N20.0288 (10)0.0291 (10)0.0208 (9)0.0010 (8)−0.0008 (8)−0.0012 (8)
S10.0371 (3)0.0324 (3)0.0283 (3)0.0066 (3)0.0013 (3)−0.0021 (2)
C1—N11.456 (3)C7—O21.363 (2)
C1—C81.515 (3)C7—H70.95
C1—H1A0.99C8—C91.389 (3)
C1—H1B0.99C8—C131.390 (3)
C2—N11.323 (3)C9—C101.384 (3)
C2—N21.388 (3)C9—H90.95
C2—S11.679 (2)C10—C111.381 (4)
C3—O11.228 (3)C10—H100.95
C3—N21.382 (3)C11—C121.379 (4)
C3—C41.464 (3)C11—H110.95
C4—C51.353 (3)C12—C131.387 (4)
C4—O21.374 (2)C12—H120.95
C5—C61.420 (3)C13—H130.95
C5—H50.95N1—H10.88
C6—C71.342 (3)N2—H20.88
C6—H60.95
N1—C1—C8114.11 (18)C9—C8—C1122.5 (2)
N1—C1—H1A108.7C13—C8—C1118.8 (2)
C8—C1—H1A108.7C10—C9—C8120.3 (2)
N1—C1—H1B108.7C10—C9—H9119.8
C8—C1—H1B108.7C8—C9—H9119.8
H1A—C1—H1B107.6C11—C10—C9120.9 (2)
N1—C2—N2116.84 (18)C11—C10—H10119.6
N1—C2—S1124.70 (16)C9—C10—H10119.6
N2—C2—S1118.46 (15)C12—C11—C10119.1 (2)
O1—C3—N2123.90 (19)C12—C11—H11120.5
O1—C3—C4120.59 (19)C10—C11—H11120.5
N2—C3—C4115.51 (18)C11—C12—C13120.5 (2)
C5—C4—O2110.61 (18)C11—C12—H12119.8
C5—C4—C3131.8 (2)C13—C12—H12119.8
O2—C4—C3117.63 (18)C12—C13—C8120.6 (2)
C4—C5—C6105.9 (2)C12—C13—H13119.7
C4—C5—H5127.1C8—C13—H13119.7
C6—C5—H5127.1C7—O2—C4105.78 (17)
C7—C6—C5107.0 (2)C2—N1—C1123.51 (18)
C7—C6—H6126.5C2—N1—H1118.2
C5—C6—H6126.5C1—N1—H1118.2
C6—C7—O2110.8 (2)C3—N2—C2128.43 (18)
C6—C7—H7124.6C3—N2—H2115.8
O2—C7—H7124.6C2—N2—H2115.8
C9—C8—C13118.6 (2)
O1—C3—C4—C51.4 (4)C10—C11—C12—C130.0 (4)
N2—C3—C4—C5−178.1 (2)C11—C12—C13—C8−0.8 (3)
O1—C3—C4—O2−179.53 (19)C9—C8—C13—C121.1 (3)
N2—C3—C4—O21.0 (3)C1—C8—C13—C12−175.5 (2)
O2—C4—C5—C60.2 (3)C6—C7—O2—C4−0.1 (2)
C3—C4—C5—C6179.3 (2)C5—C4—O2—C7−0.1 (2)
C4—C5—C6—C7−0.2 (3)C3—C4—O2—C7−179.4 (2)
C5—C6—C7—O20.2 (3)N2—C2—N1—C1−175.32 (19)
N1—C1—C8—C927.7 (3)S1—C2—N1—C14.4 (3)
N1—C1—C8—C13−155.8 (2)C8—C1—N1—C2−104.7 (2)
C13—C8—C9—C10−0.6 (3)O1—C3—N2—C2−3.1 (3)
C1—C8—C9—C10175.9 (2)C4—C3—N2—C2176.4 (2)
C8—C9—C10—C11−0.3 (4)N1—C2—N2—C3−2.3 (3)
C9—C10—C11—C120.6 (4)S1—C2—N2—C3178.05 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.882.002.697 (3)135
N2—H2···S1i0.882.703.578 (2)174
C7—H7···O1ii0.952.583.423 (3)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O10.882.002.697 (3)135
N2—H2⋯S1i0.882.703.578 (2)174
C7—H7⋯O1ii0.952.583.423 (3)148

Symmetry codes: (i) ; (ii) .

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