Literature DB >> 21202075

Biguanidinium dichloride.

Gustavo Portalone1.   

Abstract

The asymmetric unit of the title compound, C(2)H(9)N(5) (2+)·2Cl(-), is composed of one diprotonated biguanidinium cation and two chloride anions. The diprotonated cation consists of two planar halves twisted by 36.42 (6)°. The ions are associated in the crystal structure by extensive hydrogen bonding into a three-dimensional network; the diprotonated biguanidinium cation is hydrogen bonded to the chloride anions.

Entities:  

Year:  2008        PMID: 21202075      PMCID: PMC2960918          DOI: 10.1107/S1600536808006144

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a general approach to the use of multiple-hydrogen-bonding DNA/RNA nucleobases as potential supra­molecular reagents, see: Portalone & Colapietro (2004 ▶, 2007 ▶ and references therein). For related crystal structures, see: Ernst (1977 ▶); Pinkerton & Schwarzenbach (1978 ▶); Martin & Pinkerton (1996 ▶); Martin et al. (1996 ▶, 1997 ▶); Kurzer & Pitchfork (1968 ▶).

Experimental

Crystal data

C2H9N5 2+·2Cl M = 174.04 Monoclinic, a = 6.43693 (9) Å b = 16.93420 (18) Å c = 6.65260 (8) Å β = 98.6878 (12)° V = 716.84 (1) Å3 Z = 4 Mo Kα radiation μ = 0.83 mm−1 T = 298 (2) K 0.20 × 0.20 × 0.15 mm

Data collection

Oxford Diffraction Xcalibur S CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.852, T max = 0.886 80724 measured reflections 2456 independent reflections 2349 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.070 S = 1.14 2456 reflections 119 parameters All H-atom parameters refined Δρmax = 0.14 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶; cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶; data reduction: CrysAlis RED; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808006144/kp2161sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808006144/kp2161Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C2H9N52+·2ClF000 = 360
Mr = 174.04Dx = 1.613 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 80724 reflections
a = 6.43693 (9) Åθ = 3.2–32.0º
b = 16.93420 (18) ŵ = 0.83 mm1
c = 6.65260 (8) ÅT = 298 (2) K
β = 98.6878 (12)ºPlate, colourless
V = 716.841 (15) Å30.20 × 0.20 × 0.15 mm
Z = 4
Oxford Diffraction Xcalibur S CCD diffractometer2456 independent reflections
Radiation source: Enhance (Mo) X-ray source2349 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.020
Detector resolution: 16.0696 pixels mm-1θmax = 32.0º
T = 298(2) Kθmin = 3.2º
ω and φ scansh = −9→9
Absorption correction: multi-scan(CrysAlis RED; Oxford Diffraction, 2006)k = −25→25
Tmin = 0.852, Tmax = 0.886l = −9→9
80724 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullAll H-atom parameters refined
R[F2 > 2σ(F2)] = 0.027  w = 1/[σ2(Fo2) + (0.0293P)2 + 0.2376P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.071(Δ/σ)max < 0.001
S = 1.14Δρmax = 0.14 e Å3
2456 reflectionsΔρmin = −0.14 e Å3
119 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.110 (6)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.86502 (5)−0.053995 (15)0.27026 (4)0.03288 (9)
Cl20.62775 (5)0.315420 (18)0.37349 (5)0.03605 (9)
N10.35152 (13)0.16618 (5)0.32041 (15)0.02556 (17)
H10.430 (3)0.2034 (10)0.356 (3)0.039 (4)*
N20.00539 (15)0.12772 (6)0.20409 (16)0.02955 (19)
H210.025 (3)0.0812 (11)0.243 (3)0.038 (4)*
H22−0.109 (3)0.1408 (11)0.130 (3)0.048 (5)*
N30.09938 (18)0.25798 (6)0.21118 (17)0.0335 (2)
H31−0.025 (3)0.2708 (11)0.195 (3)0.046 (5)*
H320.193 (3)0.2941 (11)0.232 (3)0.044 (5)*
N40.38953 (17)0.03968 (6)0.18533 (15)0.0304 (2)
H410.461 (3)−0.0045 (12)0.196 (3)0.050 (5)*
H420.308 (3)0.0513 (11)0.078 (3)0.047 (5)*
N50.62338 (15)0.08686 (7)0.45410 (16)0.0324 (2)
H510.646 (3)0.1178 (11)0.556 (3)0.044 (5)*
H520.711 (3)0.0485 (11)0.440 (3)0.051 (5)*
C10.14797 (15)0.18273 (5)0.24248 (14)0.02118 (17)
C20.45468 (15)0.09538 (6)0.31785 (15)0.02354 (18)
U11U22U33U12U13U23
Cl10.04007 (15)0.02213 (13)0.03406 (15)0.00402 (9)−0.00208 (10)−0.00296 (9)
Cl20.03243 (14)0.03940 (16)0.03375 (15)−0.01269 (10)−0.00333 (10)0.00083 (10)
N10.0205 (4)0.0213 (4)0.0344 (4)−0.0012 (3)0.0024 (3)−0.0021 (3)
N20.0220 (4)0.0256 (4)0.0390 (5)−0.0017 (3)−0.0020 (3)0.0058 (4)
N30.0368 (5)0.0215 (4)0.0420 (6)0.0052 (4)0.0055 (4)0.0047 (4)
N40.0379 (5)0.0269 (4)0.0257 (4)0.0089 (4)0.0022 (4)−0.0017 (3)
N50.0253 (4)0.0399 (5)0.0312 (5)0.0067 (4)0.0010 (3)0.0010 (4)
C10.0229 (4)0.0203 (4)0.0208 (4)0.0012 (3)0.0047 (3)0.0022 (3)
C20.0218 (4)0.0261 (4)0.0238 (4)0.0022 (3)0.0068 (3)0.0031 (3)
N1—C11.3634 (13)N3—H320.857 (19)
N1—C21.3719 (13)N4—C21.3156 (14)
N1—H10.819 (18)N4—H410.88 (2)
N2—C11.3056 (13)N4—H420.846 (19)
N2—H210.833 (18)N5—C21.3131 (14)
N2—H220.852 (19)N5—H510.853 (19)
N3—C11.3211 (13)N5—H520.874 (19)
N3—H310.823 (19)
C1—N1—C2127.89 (9)H41—N4—H42121.2 (17)
C1—N1—H1117.6 (12)C2—N5—H51120.4 (12)
C2—N1—H1113.6 (12)C2—N5—H52119.2 (13)
C1—N2—H21122.9 (12)H51—N5—H52120.4 (17)
C1—N2—H22116.6 (13)N2—C1—N3120.97 (10)
H21—N2—H22120.4 (17)N2—C1—N1122.31 (9)
C1—N3—H31118.5 (13)N3—C1—N1116.70 (9)
C1—N3—H32121.3 (12)N5—C2—N4122.04 (10)
H31—N3—H32119.0 (17)N5—C2—N1116.03 (10)
C2—N4—H41116.7 (12)N4—C2—N1121.93 (9)
C2—N4—H42119.7 (12)
C2—N1—C1—N219.96 (17)C1—N1—C2—N5−159.12 (10)
C2—N1—C1—N3−161.49 (10)C1—N1—C2—N421.55 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1···Cl20.819 (18)2.279 (18)3.0796 (9)166.0 (16)
N2—H21···Cl1i0.833 (18)2.530 (18)3.2557 (10)146.4 (15)
N2—H22···Cl2ii0.852 (19)2.34 (2)3.1714 (10)167.1 (17)
N3—H31···Cl2i0.823 (19)2.787 (19)3.5098 (12)147.8 (16)
N3—H32···Cl1iii0.857 (19)2.599 (19)3.1933 (10)127.4 (15)
N3—H32···Cl20.857 (19)2.835 (19)3.5454 (12)141.3 (15)
N4—H41···Cl10.88 (2)2.703 (19)3.4178 (11)139.4 (16)
N4—H42···Cl1iv0.846 (19)2.412 (19)3.2295 (10)162.8 (17)
N5—H51···Cl2v0.853 (19)2.413 (19)3.2404 (12)163.7 (16)
N5—H52···Cl10.874 (19)2.369 (19)3.1905 (11)156.7 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯Cl20.819 (18)2.279 (18)3.0796 (9)166.0 (16)
N2—H21⋯Cl1i0.833 (18)2.530 (18)3.2557 (10)146.4 (15)
N2—H22⋯Cl2ii0.852 (19)2.34 (2)3.1714 (10)167.1 (17)
N3—H31⋯Cl2i0.823 (19)2.787 (19)3.5098 (12)147.8 (16)
N3—H32⋯Cl1iii0.857 (19)2.599 (19)3.1933 (10)127.4 (15)
N3—H32⋯Cl20.857 (19)2.835 (19)3.5454 (12)141.3 (15)
N4—H41⋯Cl10.88 (2)2.703 (19)3.4178 (11)139.4 (16)
N4—H42⋯Cl1iv0.846 (19)2.412 (19)3.2295 (10)162.8 (17)
N5—H51⋯Cl2v0.853 (19)2.413 (19)3.2404 (12)163.7 (16)
N5—H52⋯Cl10.874 (19)2.369 (19)3.1905 (11)156.7 (17)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Gustavo Portalone; Marcello Colapietro
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