Literature DB >> 21202067

Bis(benzimidazolium) naphthalene-1,5-disulfonate trihydrate.

Zi-Liang Wang, Lin-Yu Jin, Lin-Heng Wei.   

Abstract

The title compound, 2C(7)H(7)N(2) (+)·C(10)H(6)O(6)S(2) (2-)·3H(2)O, consists of two crystallographically independent benzimidazolium cations, two independent naphthalene-1,5-disulfonate dianions (both generated by inversion) and three water mol-ecules. These components construct an infinite three-dimensional framework in the crystal structure via O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21202067      PMCID: PMC2960975          DOI: 10.1107/S1600536808005916

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Wang & Wei (2007 ▶).

Experimental

Crystal data

2C7H7N2 +·C10H6O6S2 2−·3H2O M = 578.61 Triclinic, a = 8.372 (4) Å b = 9.889 (5) Å c = 17.044 (8) Å α = 80.914 (8)° β = 87.557 (9)° γ = 73.641 (8)° V = 1337.0 (11) Å3 Z = 2 Mo Kα radiation μ = 0.26 mm−1 T = 296 (2) K 0.15 × 0.12 × 0.04 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.962, T max = 0.990 6891 measured reflections 4670 independent reflections 3494 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.110 S = 1.06 4670 reflections 392 parameters 37 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808005916/hb2700sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808005916/hb2700Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C7H7N2+·C10H6O6S22–·3H2OZ = 2
Mr = 578.61F000 = 604
Triclinic, P1Dx = 1.437 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 8.372 (4) ÅCell parameters from 3010 reflections
b = 9.889 (5) Åθ = 2.5–28.2º
c = 17.044 (8) ŵ = 0.26 mm1
α = 80.914 (8)ºT = 296 (2) K
β = 87.557 (9)ºBlock, colourless
γ = 73.641 (8)º0.15 × 0.12 × 0.04 mm
V = 1337.0 (11) Å3
Bruker SMART APEX CCD diffractometer4670 independent reflections
Radiation source: fine-focus sealed tube3494 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.020
T = 296(2) Kθmax = 25.0º
ω scansθmin = 2.2º
Absorption correction: multi-scan(SADABS; Bruker, 2001)h = −9→6
Tmin = 0.962, Tmax = 0.990k = −11→10
6891 measured reflectionsl = −20→20
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difmap and geom
R[F2 > 2σ(F2)] = 0.043H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.110  w = 1/[σ2(Fo2) + (0.0559P)2 + 0.0198P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
4670 reflectionsΔρmax = 0.30 e Å3
392 parametersΔρmin = −0.33 e Å3
37 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.75176 (8)0.65881 (6)0.37087 (4)0.04129 (19)
S20.39100 (7)0.25493 (6)0.14588 (3)0.03710 (17)
N10.8368 (3)0.0653 (2)1.09595 (14)0.0502 (6)
H1A0.794 (4)−0.007 (2)1.1155 (19)0.098 (12)*
N20.9885 (3)0.2131 (2)1.08427 (15)0.0505 (6)
H2A1.065 (3)0.253 (3)1.0965 (18)0.082 (11)*
N30.0749 (3)0.7339 (2)0.48285 (14)0.0460 (5)
H3A0.032 (3)0.670 (2)0.4660 (15)0.063 (9)*
N40.1689 (3)0.8418 (2)0.56460 (12)0.0432 (5)
H4A0.192 (3)0.865 (3)0.6108 (9)0.056 (8)*
O10.7659 (2)0.65613 (18)0.28505 (10)0.0554 (5)
O20.6945 (2)0.80262 (17)0.39064 (11)0.0571 (5)
O30.9056 (2)0.57458 (17)0.41288 (10)0.0473 (4)
O40.21223 (19)0.33257 (17)0.14166 (10)0.0457 (4)
O50.4281 (2)0.13448 (16)0.10230 (10)0.0490 (5)
O60.4518 (2)0.21705 (18)0.22760 (10)0.0545 (5)
O70.6702 (3)0.8721 (2)0.15255 (12)0.0636 (6)
H7A0.695 (3)0.822 (3)0.1982 (9)0.072 (5)*
H7B0.575 (2)0.928 (3)0.1601 (16)0.096 (14)*
O80.7493 (3)0.0547 (2)0.30528 (12)0.0573 (5)
H8A0.733 (3)−0.0213 (17)0.3299 (15)0.067 (5)*
H8B0.657 (2)0.102 (3)0.283 (2)0.130 (17)*
O90.0253 (4)0.6345 (3)0.73328 (16)0.0971 (8)
H9A−0.066 (2)0.618 (3)0.719 (2)0.081 (5)*
H9B0.089 (3)0.5484 (16)0.743 (2)0.101 (6)*
C10.9359 (3)0.1177 (3)1.13375 (17)0.0546 (7)
H10.96410.09121.18730.065*
C20.8228 (3)0.1305 (2)1.01695 (16)0.0421 (6)
C30.7326 (3)0.1173 (3)0.95341 (18)0.0548 (7)
H30.66750.05410.95850.066*
C40.7446 (4)0.2034 (3)0.88195 (18)0.0619 (8)
H40.68610.19750.83800.074*
C50.8424 (4)0.2990 (3)0.87418 (18)0.0626 (8)
H50.84680.35470.82520.075*
C60.9320 (3)0.3128 (3)0.93678 (17)0.0532 (7)
H60.99670.37630.93140.064*
C70.9205 (3)0.2262 (2)1.00908 (16)0.0428 (6)
C80.4007 (3)0.4475 (3)0.37232 (15)0.0514 (7)
H80.34770.41860.33380.062*
C90.5171 (3)0.5243 (3)0.34934 (15)0.0455 (6)
H90.54100.54520.29570.055*
C100.5963 (3)0.5689 (2)0.40503 (13)0.0360 (5)
C110.5595 (3)0.5398 (2)0.48859 (13)0.0348 (5)
C120.6357 (3)0.5851 (3)0.54888 (14)0.0442 (6)
H120.71140.63780.53460.053*
C130.0892 (3)0.7450 (3)0.55844 (16)0.0478 (7)
H130.04930.69270.60110.057*
C140.1487 (3)0.8290 (2)0.43592 (14)0.0392 (6)
C150.1657 (3)0.8615 (3)0.35337 (16)0.0541 (7)
H150.12640.81540.31810.065*
C160.2444 (4)0.9660 (3)0.32755 (17)0.0620 (8)
H160.25840.99070.27330.074*
C170.3036 (3)1.0360 (3)0.38033 (18)0.0578 (8)
H170.35521.10600.36010.069*
C180.2877 (3)1.0043 (3)0.46113 (16)0.0477 (6)
H180.32741.05070.49600.057*
C190.2086 (3)0.8982 (2)0.48839 (14)0.0369 (6)
C200.6767 (3)0.5287 (2)0.11047 (14)0.0394 (6)
H200.74860.55480.14140.047*
C210.6018 (3)0.4208 (2)0.14309 (13)0.0357 (5)
H210.62490.37640.19530.043*
C220.4946 (3)0.3809 (2)0.09785 (13)0.0308 (5)
C230.4614 (3)0.4453 (2)0.01605 (12)0.0288 (5)
C240.3560 (3)0.4050 (2)−0.03388 (13)0.0353 (5)
H240.30840.3323−0.01390.042*
U11U22U33U12U13U23
S10.0484 (4)0.0338 (3)0.0428 (4)−0.0151 (3)−0.0003 (3)−0.0022 (3)
S20.0385 (4)0.0360 (3)0.0376 (3)−0.0162 (3)0.0002 (3)0.0027 (3)
N10.0443 (13)0.0410 (13)0.0639 (16)−0.0139 (11)0.0030 (11)−0.0011 (11)
N20.0383 (13)0.0498 (14)0.0660 (16)−0.0161 (11)−0.0060 (11)−0.0082 (12)
N30.0469 (13)0.0372 (12)0.0571 (15)−0.0157 (10)−0.0011 (11)−0.0087 (11)
N40.0488 (13)0.0396 (12)0.0397 (13)−0.0117 (10)−0.0042 (10)−0.0018 (10)
O10.0689 (13)0.0589 (12)0.0399 (10)−0.0246 (10)0.0042 (9)−0.0003 (9)
O20.0714 (13)0.0312 (9)0.0693 (13)−0.0159 (9)0.0042 (10)−0.0072 (9)
O30.0444 (10)0.0422 (10)0.0567 (11)−0.0170 (8)−0.0044 (8)−0.0020 (8)
O40.0346 (10)0.0478 (10)0.0541 (11)−0.0140 (8)0.0058 (8)−0.0033 (8)
O50.0555 (11)0.0317 (9)0.0634 (12)−0.0180 (8)0.0009 (9)−0.0069 (8)
O60.0642 (12)0.0609 (12)0.0395 (10)−0.0306 (10)−0.0067 (9)0.0153 (8)
O70.0655 (15)0.0497 (13)0.0740 (15)−0.0202 (12)−0.0078 (11)0.0045 (10)
O80.0676 (14)0.0493 (12)0.0582 (13)−0.0246 (11)−0.0130 (11)0.0009 (10)
O90.109 (2)0.0876 (17)0.0720 (16)0.0001 (16)0.0210 (16)−0.0007 (14)
C10.0467 (17)0.0544 (17)0.0579 (18)−0.0094 (14)−0.0031 (14)−0.0022 (14)
C20.0341 (14)0.0358 (14)0.0562 (17)−0.0083 (11)0.0035 (12)−0.0099 (12)
C30.0445 (16)0.0523 (17)0.074 (2)−0.0178 (13)0.0072 (14)−0.0234 (15)
C40.0578 (19)0.069 (2)0.061 (2)−0.0145 (16)−0.0041 (15)−0.0214 (16)
C50.065 (2)0.0580 (19)0.0579 (19)−0.0107 (16)0.0059 (16)−0.0032 (15)
C60.0507 (17)0.0434 (15)0.0679 (19)−0.0184 (13)0.0076 (15)−0.0078 (14)
C70.0331 (14)0.0369 (14)0.0585 (17)−0.0084 (11)0.0032 (12)−0.0112 (12)
C80.0587 (17)0.0617 (17)0.0434 (16)−0.0275 (15)−0.0076 (13)−0.0147 (13)
C90.0541 (16)0.0511 (15)0.0341 (13)−0.0175 (13)−0.0024 (12)−0.0087 (12)
C100.0384 (14)0.0325 (12)0.0363 (13)−0.0083 (10)−0.0013 (11)−0.0054 (10)
C110.0360 (13)0.0296 (12)0.0400 (13)−0.0095 (10)−0.0027 (10)−0.0074 (10)
C120.0474 (15)0.0487 (15)0.0441 (15)−0.0229 (13)−0.0004 (12)−0.0118 (12)
C130.0498 (16)0.0364 (14)0.0532 (17)−0.0104 (12)0.0041 (13)0.0014 (12)
C140.0350 (13)0.0358 (13)0.0450 (15)−0.0080 (11)0.0009 (11)−0.0047 (11)
C150.0566 (18)0.0572 (17)0.0471 (16)−0.0108 (14)−0.0004 (13)−0.0130 (13)
C160.067 (2)0.068 (2)0.0452 (17)−0.0154 (17)0.0105 (15)−0.0002 (15)
C170.0546 (18)0.0537 (17)0.0628 (19)−0.0193 (15)0.0120 (15)0.0027 (15)
C180.0410 (15)0.0443 (15)0.0606 (18)−0.0165 (12)0.0006 (13)−0.0074 (13)
C190.0326 (13)0.0336 (13)0.0413 (14)−0.0058 (11)−0.0028 (11)−0.0020 (11)
C200.0410 (14)0.0432 (14)0.0399 (14)−0.0193 (12)−0.0071 (11)−0.0076 (11)
C210.0407 (14)0.0372 (13)0.0294 (12)−0.0121 (11)−0.0022 (10)−0.0030 (10)
C220.0314 (12)0.0278 (12)0.0329 (12)−0.0079 (10)0.0016 (10)−0.0045 (9)
C230.0276 (12)0.0273 (12)0.0319 (12)−0.0078 (9)0.0037 (10)−0.0062 (10)
C240.0381 (13)0.0343 (13)0.0379 (13)−0.0185 (11)−0.0001 (10)−0.0030 (10)
S1—O21.4558 (18)C5—H50.9300
S1—O11.4663 (19)C6—C71.402 (4)
S1—O31.4665 (18)C6—H60.9300
S1—C101.802 (2)C8—C12i1.373 (3)
S2—O51.4555 (18)C8—C91.404 (3)
S2—O61.4586 (18)C8—H80.9300
S2—O41.4761 (18)C9—C101.373 (3)
S2—C221.789 (2)C9—H90.9300
N1—C11.329 (3)C10—C111.445 (3)
N1—C21.393 (3)C11—C121.423 (3)
N1—H1A0.898 (10)C11—C11i1.442 (4)
N2—C11.322 (3)C12—C8i1.373 (3)
N2—C71.397 (3)C12—H120.9300
N2—H2A0.887 (18)C13—H130.9300
N3—C131.323 (3)C14—C191.394 (3)
N3—C141.398 (3)C14—C151.403 (3)
N3—H3A0.895 (10)C15—C161.382 (4)
N4—C131.330 (3)C15—H150.9300
N4—C191.396 (3)C16—C171.401 (4)
N4—H4A0.899 (10)C16—H160.9300
O7—H7A0.853 (10)C17—C181.373 (4)
O7—H7B0.852 (10)C17—H170.9300
O8—H8A0.844 (10)C18—C191.402 (3)
O8—H8B0.847 (10)C18—H180.9300
O9—H9A0.871 (10)C20—C24ii1.367 (3)
O9—H9B0.863 (10)C20—C211.414 (3)
C1—H10.9300C20—H200.9300
C2—C31.389 (4)C21—C221.382 (3)
C2—C71.403 (3)C21—H210.9300
C3—C41.389 (4)C22—C231.442 (3)
C3—H30.9300C23—C241.425 (3)
C4—C51.403 (4)C23—C23ii1.436 (4)
C4—H40.9300C24—C20ii1.367 (3)
C5—C61.375 (4)C24—H240.9300
O2—S1—O1113.02 (11)C9—C8—H8119.7
O2—S1—O3112.36 (11)C10—C9—C8120.8 (2)
O1—S1—O3111.76 (11)C10—C9—H9119.6
O2—S1—C10107.58 (11)C8—C9—H9119.6
O1—S1—C10105.71 (11)C9—C10—C11120.7 (2)
O3—S1—C10105.83 (10)C9—C10—S1117.92 (18)
O5—S2—O6113.58 (11)C11—C10—S1121.33 (17)
O5—S2—O4111.49 (10)C12—C11—C11i118.8 (3)
O6—S2—O4111.78 (11)C12—C11—C10123.3 (2)
O5—S2—C22108.32 (10)C11i—C11—C10117.9 (3)
O6—S2—C22106.06 (10)C8i—C12—C11121.2 (2)
O4—S2—C22105.02 (10)C8i—C12—H12119.4
C1—N1—C2108.7 (2)C11—C12—H12119.4
C1—N1—H1A127 (2)N3—C13—N4110.2 (2)
C2—N1—H1A124 (2)N3—C13—H13124.9
C1—N2—C7109.1 (2)N4—C13—H13124.9
C1—N2—H2A124 (2)C19—C14—N3106.2 (2)
C7—N2—H2A126 (2)C19—C14—C15121.6 (2)
C13—N3—C14108.8 (2)N3—C14—C15132.2 (2)
C13—N3—H3A124.4 (18)C16—C15—C14116.0 (3)
C14—N3—H3A126.6 (18)C16—C15—H15122.0
C13—N4—C19108.6 (2)C14—C15—H15122.0
C13—N4—H4A124.5 (17)C15—C16—C17122.3 (3)
C19—N4—H4A126.9 (17)C15—C16—H16118.9
H7A—O7—H7B103.0 (15)C17—C16—H16118.9
H8A—O8—H8B105.6 (15)C18—C17—C16121.9 (3)
H9A—O9—H9B100.1 (14)C18—C17—H17119.1
N2—C1—N1110.2 (3)C16—C17—H17119.1
N2—C1—H1124.9C17—C18—C19116.6 (3)
N1—C1—H1124.9C17—C18—H18121.7
C3—C2—N1132.0 (2)C19—C18—H18121.7
C3—C2—C7121.6 (2)C14—C19—N4106.3 (2)
N1—C2—C7106.4 (2)C14—C19—C18121.6 (2)
C4—C3—C2116.5 (3)N4—C19—C18132.1 (2)
C4—C3—H3121.8C24ii—C20—C21120.5 (2)
C2—C3—H3121.8C24ii—C20—H20119.7
C3—C4—C5121.9 (3)C21—C20—H20119.7
C3—C4—H4119.1C22—C21—C20120.4 (2)
C5—C4—H4119.1C22—C21—H21119.8
C6—C5—C4122.0 (3)C20—C21—H21119.8
C6—C5—H5119.0C21—C22—C23120.6 (2)
C4—C5—H5119.0C21—C22—S2117.66 (17)
C5—C6—C7116.4 (3)C23—C22—S2121.65 (16)
C5—C6—H6121.8C24—C23—C23ii118.9 (2)
C7—C6—H6121.8C24—C23—C22122.86 (19)
N2—C7—C6132.7 (2)C23ii—C23—C22118.2 (2)
N2—C7—C2105.7 (2)C20ii—C24—C23121.3 (2)
C6—C7—C2121.6 (3)C20ii—C24—H24119.3
C12i—C8—C9120.6 (2)C23—C24—H24119.3
C12i—C8—H8119.7
D—H···AD—HH···AD···AD—H···A
N1—H1A···O7iii0.898 (10)1.820 (12)2.708 (3)170 (3)
N2—H2A···O4iv0.887 (18)1.885 (19)2.762 (3)170 (3)
N3—H3A···O3v0.895 (10)1.937 (12)2.812 (3)166 (2)
N4—H4A···O8i0.899 (10)1.883 (11)2.771 (3)169 (2)
O7—H7B···O5vi0.852 (10)2.169 (19)2.839 (3)135 (2)
O8—H8A···O2vii0.844 (10)1.982 (10)2.826 (3)178 (3)
O7—H7A···O10.853 (10)1.999 (12)2.823 (3)162 (3)
O8—H8B···O60.847 (10)1.963 (10)2.809 (3)176 (3)
O9—H9B···O1i0.863 (10)2.157 (18)2.970 (3)157 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O7i0.898 (10)1.820 (12)2.708 (3)170 (3)
N2—H2A⋯O4ii0.887 (18)1.885 (19)2.762 (3)170 (3)
N3—H3A⋯O3iii0.895 (10)1.937 (12)2.812 (3)166 (2)
N4—H4A⋯O8iv0.899 (10)1.883 (11)2.771 (3)169 (2)
O7—H7B⋯O5v0.852 (10)2.169 (19)2.839 (3)135 (2)
O8—H8A⋯O2vi0.844 (10)1.982 (10)2.826 (3)178 (3)
O7—H7A⋯O10.853 (10)1.999 (12)2.823 (3)162 (3)
O8—H8B⋯O60.847 (10)1.963 (10)2.809 (3)176 (3)
O9—H9B⋯O1iv0.863 (10)2.157 (18)2.970 (3)157 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  2 in total

1.  Bis(2-hy-droxy-ethanaminium) naphthalene-1,5-disulfonate.

Authors:  Cong Wang; Sheng Li Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

2.  Bis(2-methyl-1H-imidazol-3-ium) naphthalene-1,5-disulfonate dihydrate.

Authors:  Yu-Feng Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-05
  2 in total

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