Literature DB >> 21201964

N,N'-Dibenzyl-N''-(4-bromo-benzo-yl)-N,N'-dimethyl-phospho-ric triamide.

Saeed Dehghanpour, Richard Welter, Aliou Hamady Barry, Farzaneh Tabasi.   

Abstract

In the title compound, C(23)H(25)BrN(3)O(2)P, the P atom has a distorted tetra-hedral coordination. In the crystal structure, the mol-ecules form centrosymmetric dimers via pairs of essentially linear N-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21201964      PMCID: PMC2960869          DOI: 10.1107/S1600536808004777

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of carbacyl­amido­phosphate, see: Barak et al. (2000 ▶); Burla et al. (1989 ▶); Gubina et al. (2000 ▶); Mallender et al. (2000 ▶); Trush et al. (2003 ▶). For related structures, see: Trush et al. (1999 ▶).

Experimental

Crystal data

C23H25BrN3O2P M = 486.34 Monoclinic, a = 9.0140 (4) Å b = 13.2690 (5) Å c = 19.377 (1) Å β = 94.1500 (14)° V = 2311.54 (18) Å3 Z = 4 Mo Kα radiation μ = 1.87 mm−1 T = 293 (2) K 0.11 × 0.09 × 0.08 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: none 12951 measured reflections 5214 independent reflections 2593 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.135 S = 1.00 5214 reflections 271 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.62 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: DENZO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808004777/zl2095sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808004777/zl2095Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H25BrN3O2PF000 = 1000
Mr = 486.34Dx = 1.397 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 10293 reflections
a = 9.0140 (4) Åθ = 1.0–27.5º
b = 13.2690 (5) ŵ = 1.87 mm1
c = 19.3770 (10) ÅT = 293 (2) K
β = 94.1500 (14)ºPrism, colorless
V = 2311.54 (18) Å30.11 × 0.09 × 0.08 mm
Z = 4
Nonius KappaCCD diffractometer2593 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.051
Monochromator: graphiteθmax = 27.5º
T = 293(2) Kθmin = 1.9º
π scansh = −11→10
Absorption correction: nonek = −17→14
12951 measured reflectionsl = −17→25
5214 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.053H-atom parameters constrained
wR(F2) = 0.135  w = 1/[σ2(Fo2) + (0.052P)2 + 0.3719P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.001
5214 reflectionsΔρmax = 0.27 e Å3
271 parametersΔρmin = −0.62 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.97528 (7)0.99976 (3)0.19720 (3)0.1095 (3)
P10.97988 (9)0.37741 (5)0.08475 (4)0.0427 (2)
O10.8889 (3)0.48944 (15)0.21515 (13)0.0676 (7)
O21.0335 (2)0.37714 (14)0.01466 (10)0.0493 (5)
N10.9570 (3)0.49921 (14)0.10487 (13)0.0453 (6)
H10.96610.54140.07170.054*
N21.0988 (3)0.32013 (17)0.13878 (12)0.0478 (7)
N30.8203 (3)0.32336 (16)0.09738 (13)0.0474 (6)
C10.9380 (3)0.6529 (2)0.17215 (15)0.0440 (7)
C20.8517 (3)0.7031 (2)0.21718 (16)0.0505 (8)
H20.78720.66650.24290.061*
C30.8593 (4)0.8061 (2)0.22469 (17)0.0588 (9)
H30.79860.83950.25410.071*
C40.9584 (4)0.8585 (2)0.18784 (18)0.0615 (10)
C51.0478 (4)0.8100 (2)0.14387 (19)0.0682 (10)
H51.11520.84650.11960.082*
C61.0366 (4)0.7066 (2)0.13596 (17)0.0564 (9)
H61.09610.67330.10600.068*
C70.9257 (3)0.5404 (2)0.16691 (17)0.0486 (8)
C81.0706 (4)0.2882 (3)0.20873 (17)0.0669 (10)
H8A0.96970.30390.21760.100*
H8B1.13730.32280.24160.100*
H8C1.08610.21680.21310.100*
C91.2491 (4)0.2979 (2)0.11888 (18)0.0566 (9)
H9A1.32000.31710.15660.068*
H9B1.26860.33900.07920.068*
C101.2746 (3)0.1886 (2)0.10116 (17)0.0506 (8)
C111.3680 (4)0.1286 (3)0.14281 (19)0.0680 (10)
H111.41110.15430.18420.082*
C121.3988 (5)0.0301 (3)0.1237 (3)0.0867 (13)
H121.4631−0.00950.15200.104*
C131.3348 (5)−0.0078 (3)0.0640 (3)0.0903 (14)
H131.3546−0.07380.05130.108*
C141.2410 (5)0.0505 (3)0.0221 (2)0.0830 (12)
H141.19800.0241−0.01910.100*
C151.2100 (4)0.1478 (3)0.04062 (19)0.0646 (10)
H151.14500.18650.01220.078*
C160.8132 (4)0.2134 (2)0.0867 (2)0.0710 (11)
H16A0.90950.18460.09810.107*
H16B0.78290.19940.03910.107*
H16C0.74250.18480.11580.107*
C170.6770 (3)0.3738 (2)0.08216 (17)0.0545 (8)
H17A0.68720.44390.09590.065*
H17B0.60430.34330.11020.065*
C180.6182 (3)0.3696 (2)0.00736 (16)0.0463 (8)
C190.5215 (4)0.2942 (3)−0.01586 (19)0.0655 (10)
H190.49080.24630.01520.079*
C200.4698 (4)0.2890 (3)−0.0847 (2)0.0781 (11)
H200.40560.2374−0.09980.094*
C210.5125 (4)0.3591 (3)−0.13033 (19)0.0726 (11)
H210.47610.3562−0.17640.087*
C220.6101 (4)0.4348 (3)−0.10826 (19)0.0665 (10)
H220.64100.4823−0.13950.080*
C230.6611 (4)0.4394 (2)−0.03991 (19)0.0574 (9)
H230.72610.4907−0.02510.069*
U11U22U33U12U13U23
Br10.1798 (6)0.0408 (2)0.1100 (5)−0.0035 (2)0.0253 (4)−0.0180 (2)
P10.0553 (5)0.0330 (4)0.0398 (5)0.0004 (4)0.0042 (4)0.0012 (3)
O10.108 (2)0.0516 (14)0.0455 (14)−0.0064 (12)0.0206 (14)0.0020 (11)
O20.0716 (14)0.0369 (11)0.0401 (13)0.0037 (9)0.0092 (11)0.0006 (9)
N10.0654 (17)0.0327 (13)0.0383 (15)−0.0008 (11)0.0068 (13)0.0019 (10)
N20.0522 (17)0.0476 (14)0.0432 (16)0.0058 (12)0.0009 (13)0.0108 (12)
N30.0476 (16)0.0404 (14)0.0542 (17)−0.0004 (11)0.0035 (13)0.0044 (12)
C10.0524 (19)0.0436 (17)0.0356 (18)0.0029 (14)−0.0001 (15)−0.0034 (14)
C20.052 (2)0.0533 (19)0.0466 (19)−0.0017 (15)0.0035 (16)−0.0025 (16)
C30.071 (3)0.053 (2)0.051 (2)0.0103 (17)0.0030 (18)−0.0144 (17)
C40.087 (3)0.0387 (18)0.058 (2)0.0037 (17)0.001 (2)−0.0077 (16)
C50.091 (3)0.053 (2)0.063 (2)−0.0175 (18)0.016 (2)−0.0092 (18)
C60.073 (2)0.0428 (18)0.056 (2)−0.0014 (16)0.0195 (18)−0.0081 (16)
C70.060 (2)0.0449 (17)0.042 (2)0.0006 (15)0.0078 (16)−0.0022 (16)
C80.090 (3)0.063 (2)0.047 (2)0.0128 (19)0.0006 (19)0.0097 (17)
C90.051 (2)0.0508 (19)0.067 (2)−0.0036 (15)−0.0023 (17)0.0058 (17)
C100.0425 (19)0.0478 (18)0.062 (2)−0.0007 (14)0.0061 (17)0.0063 (17)
C110.064 (2)0.063 (2)0.075 (3)0.0067 (18)−0.006 (2)0.005 (2)
C120.092 (3)0.068 (3)0.099 (4)0.028 (2)−0.006 (3)0.016 (3)
C130.096 (3)0.063 (3)0.113 (4)0.017 (2)0.012 (3)−0.011 (2)
C140.083 (3)0.078 (3)0.087 (3)0.005 (2)0.004 (2)−0.021 (2)
C150.062 (2)0.062 (2)0.068 (3)0.0057 (18)−0.004 (2)0.0013 (19)
C160.074 (3)0.0398 (18)0.098 (3)−0.0097 (16)−0.003 (2)0.0053 (19)
C170.052 (2)0.058 (2)0.054 (2)0.0010 (16)0.0072 (17)−0.0010 (16)
C180.0409 (18)0.0485 (18)0.050 (2)0.0054 (14)0.0055 (15)−0.0038 (15)
C190.061 (2)0.070 (2)0.064 (3)−0.0133 (18)0.0004 (19)0.005 (2)
C200.081 (3)0.073 (2)0.077 (3)−0.020 (2)−0.015 (2)0.001 (2)
C210.083 (3)0.077 (3)0.055 (2)0.007 (2)−0.011 (2)−0.004 (2)
C220.071 (3)0.068 (2)0.059 (3)0.0012 (19)−0.002 (2)0.0139 (19)
C230.059 (2)0.050 (2)0.062 (2)−0.0029 (15)−0.0046 (18)0.0030 (17)
Br1—C41.889 (3)C10—C111.377 (4)
P1—O21.474 (2)C10—C151.382 (4)
P1—N21.631 (2)C11—C121.392 (5)
P1—N31.642 (2)C11—H110.9300
P1—N11.679 (2)C12—C131.353 (6)
O1—C71.218 (4)C12—H120.9300
N1—C71.368 (4)C13—C141.369 (6)
N1—H10.8600C13—H130.9300
N2—C81.460 (4)C14—C151.375 (5)
N2—C91.465 (4)C14—H140.9300
N3—C171.465 (4)C15—H150.9300
N3—C161.474 (4)C16—H16A0.9600
C1—C61.370 (4)C16—H16B0.9600
C1—C21.381 (4)C16—H16C0.9600
C1—C71.501 (4)C17—C181.508 (4)
C2—C31.376 (4)C17—H17A0.9700
C2—H20.9300C17—H17B0.9700
C3—C41.372 (5)C18—C231.377 (4)
C3—H30.9300C18—C191.381 (4)
C4—C51.374 (5)C19—C201.382 (5)
C5—C61.385 (4)C19—H190.9300
C5—H50.9300C20—C211.359 (5)
C6—H60.9300C20—H200.9300
C8—H8A0.9600C21—C221.382 (5)
C8—H8B0.9600C21—H210.9300
C8—H8C0.9600C22—C231.371 (5)
C9—C101.512 (4)C22—H220.9300
C9—H9A0.9700C23—H230.9300
C9—H9B0.9700
O2—P1—N2110.25 (13)C11—C10—C15118.3 (3)
O2—P1—N3119.05 (13)C11—C10—C9121.2 (3)
N2—P1—N3104.06 (12)C15—C10—C9120.4 (3)
O2—P1—N1105.69 (12)C10—C11—C12120.8 (3)
N2—P1—N1112.69 (13)C10—C11—H11119.6
N3—P1—N1105.20 (12)C12—C11—H11119.6
C7—N1—P1128.7 (2)C13—C12—C11119.7 (4)
C7—N1—H1115.7C13—C12—H12120.1
P1—N1—H1115.7C11—C12—H12120.1
C8—N2—C9114.4 (2)C12—C13—C14120.3 (4)
C8—N2—P1125.5 (2)C12—C13—H13119.9
C9—N2—P1120.1 (2)C14—C13—H13119.9
C17—N3—C16113.3 (2)C13—C14—C15120.3 (4)
C17—N3—P1122.65 (19)C13—C14—H14119.8
C16—N3—P1116.2 (2)C15—C14—H14119.8
C6—C1—C2119.3 (3)C14—C15—C10120.6 (3)
C6—C1—C7122.0 (3)C14—C15—H15119.7
C2—C1—C7118.7 (3)C10—C15—H15119.7
C3—C2—C1121.3 (3)N3—C16—H16A109.5
C3—C2—H2119.3N3—C16—H16B109.5
C1—C2—H2119.3H16A—C16—H16B109.5
C4—C3—C2118.5 (3)N3—C16—H16C109.5
C4—C3—H3120.7H16A—C16—H16C109.5
C2—C3—H3120.7H16B—C16—H16C109.5
C3—C4—C5121.3 (3)N3—C17—C18114.8 (3)
C3—C4—Br1120.2 (3)N3—C17—H17A108.6
C5—C4—Br1118.5 (3)C18—C17—H17A108.6
C4—C5—C6119.4 (3)N3—C17—H17B108.6
C4—C5—H5120.3C18—C17—H17B108.6
C6—C5—H5120.3H17A—C17—H17B107.5
C1—C6—C5120.2 (3)C23—C18—C19118.1 (3)
C1—C6—H6119.9C23—C18—C17121.2 (3)
C5—C6—H6119.9C19—C18—C17120.7 (3)
O1—C7—N1122.5 (3)C18—C19—C20120.7 (3)
O1—C7—C1121.5 (3)C18—C19—H19119.6
N1—C7—C1116.0 (3)C20—C19—H19119.6
N2—C8—H8A109.5C21—C20—C19120.2 (3)
N2—C8—H8B109.5C21—C20—H20119.9
H8A—C8—H8B109.5C19—C20—H20119.9
N2—C8—H8C109.5C20—C21—C22120.0 (3)
H8A—C8—H8C109.5C20—C21—H21120.0
H8B—C8—H8C109.5C22—C21—H21120.0
N2—C9—C10114.3 (2)C23—C22—C21119.5 (3)
N2—C9—H9A108.7C23—C22—H22120.3
C10—C9—H9A108.7C21—C22—H22120.3
N2—C9—H9B108.7C22—C23—C18121.5 (3)
C10—C9—H9B108.7C22—C23—H23119.3
H9A—C9—H9B107.6C18—C23—H23119.3
O2—P1—N1—C7−171.6 (3)C2—C1—C7—O1−27.1 (4)
N2—P1—N1—C7−51.2 (3)C6—C1—C7—N1−30.6 (4)
N3—P1—N1—C761.6 (3)C2—C1—C7—N1152.3 (3)
O2—P1—N2—C8−167.1 (2)C8—N2—C9—C1076.2 (3)
N3—P1—N2—C8−38.3 (3)P1—N2—C9—C10−104.6 (3)
N1—P1—N2—C875.1 (3)N2—C9—C10—C11−111.6 (3)
O2—P1—N2—C913.8 (2)N2—C9—C10—C1571.6 (4)
N3—P1—N2—C9142.6 (2)C15—C10—C11—C121.2 (5)
N1—P1—N2—C9−104.0 (2)C9—C10—C11—C12−175.6 (3)
O2—P1—N3—C17−81.9 (3)C10—C11—C12—C13−0.8 (6)
N2—P1—N3—C17154.9 (2)C11—C12—C13—C140.5 (7)
N1—P1—N3—C1736.2 (3)C12—C13—C14—C15−0.5 (7)
O2—P1—N3—C1664.9 (3)C13—C14—C15—C101.0 (6)
N2—P1—N3—C16−58.3 (3)C11—C10—C15—C14−1.3 (5)
N1—P1—N3—C16−177.0 (2)C9—C10—C15—C14175.6 (3)
C6—C1—C2—C32.2 (5)C16—N3—C17—C18−65.4 (3)
C7—C1—C2—C3179.4 (3)P1—N3—C17—C1882.3 (3)
C1—C2—C3—C4−2.0 (5)N3—C17—C18—C23−85.4 (4)
C2—C3—C4—C50.5 (5)N3—C17—C18—C1993.4 (3)
C2—C3—C4—Br1−179.1 (2)C23—C18—C19—C200.2 (5)
C3—C4—C5—C60.7 (6)C17—C18—C19—C20−178.7 (3)
Br1—C4—C5—C6−179.6 (3)C18—C19—C20—C21−0.7 (6)
C2—C1—C6—C5−0.9 (5)C19—C20—C21—C221.2 (6)
C7—C1—C6—C5−178.0 (3)C20—C21—C22—C23−1.1 (6)
C4—C5—C6—C1−0.5 (5)C21—C22—C23—C180.5 (5)
P1—N1—C7—O1−10.8 (5)C19—C18—C23—C22−0.1 (5)
P1—N1—C7—C1169.7 (2)C17—C18—C23—C22178.8 (3)
C6—C1—C7—O1150.0 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.861.992.845 (3)170.4
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2i0.861.992.845 (3)170

Symmetry code: (i) .

  3 in total

1.  Evidence for P-N bond scission in phosphoroamidate nerve agent adducts of human acetylcholinesterase.

Authors:  D Barak; A Ordentlich; D Kaplan; R Barak; D Mizrahi; C Kronman; Y Segall; B Velan; A Shafferman
Journal:  Biochemistry       Date:  2000-02-08       Impact factor: 3.162

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Acetylthiocholine binds to asp74 at the peripheral site of human acetylcholinesterase as the first step in the catalytic pathway.

Authors:  W D Mallender; T Szegletes; T L Rosenberry
Journal:  Biochemistry       Date:  2000-07-04       Impact factor: 3.162

  3 in total

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