| Literature DB >> 21201960 |
Yaobing Wang1, Tongling Liang, Jiannian Yao, Tianyou Zhai, Hongbing Fu.
Abstract
The title compound, C(21)H(27)N(7), was synthesized by reaction of tris-(2-amino-ethyl)amine and pyrrole-2-carbaldehyde in ethanol at room temperature. The structure is stabilized by intra- and inter-molecular C-H⋯N and N-H⋯N hydrogen-bonding inter-actions.Entities:
Year: 2008 PMID: 21201960 PMCID: PMC2960820 DOI: 10.1107/S1600536807065907
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H27N7 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 19300 reflections |
| θ = 1.9–27.5º | |
| µ = 0.08 mm−1 | |
| β = 105.97 (3)º | Needle, brown |
| 0.80 × 0.08 × 0.05 mm | |
| Rigaku R-AXIS RAPID IP diffractometer | 4832 independent reflections |
| Radiation source: Rotating Anode | 1905 reflections with |
| Monochromator: graphite | |
| θmax = 27.5º | |
| oscillation scans | θmin = 1.9º |
| Absorption correction: multi-scan(ABSCOR; Higashi, 1995) | |
| 19300 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 4832 reflections | Δρmax = 0.20 e Å−3 |
| 253 parameters | Δρmin = −0.18 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.32208 (19) | 0.2117 (2) | −0.04712 (11) | 0.0456 (6) | |
| N2 | 0.3346 (2) | 0.3634 (2) | −0.17842 (11) | 0.0439 (6) | |
| N3 | 0.47309 (19) | 0.6138 (3) | −0.18248 (11) | 0.0493 (7) | |
| H3A | 0.4361 | 0.6213 | −0.1510 | 0.059* | |
| N4 | 0.1461 (2) | 0.1199 (3) | 0.03356 (12) | 0.0477 (6) | |
| N5 | 0.1051 (2) | −0.1779 (3) | 0.05915 (12) | 0.0523 (7) | |
| H5A | 0.0388 | −0.1426 | 0.0339 | 0.063* | |
| N6 | 0.6284 (2) | 0.2840 (2) | 0.07191 (11) | 0.0443 (6) | |
| N7 | 0.8400 (2) | 0.4282 (2) | 0.15596 (12) | 0.0453 (6) | |
| H7A | 0.7761 | 0.4688 | 0.1611 | 0.054* | |
| C1 | 0.3214 (3) | 0.1456 (3) | −0.11191 (15) | 0.0520 (8) | |
| H1A | 0.2744 | 0.0595 | −0.1159 | 0.062* | |
| H1B | 0.4039 | 0.1183 | −0.1093 | 0.062* | |
| C2 | 0.2728 (3) | 0.2291 (3) | −0.17799 (14) | 0.0503 (8) | |
| H2B | 0.2810 | 0.1726 | −0.2164 | 0.060* | |
| H2C | 0.1873 | 0.2469 | −0.1845 | 0.060* | |
| C3 | 0.4025 (3) | 0.3753 (3) | −0.21867 (14) | 0.0470 (8) | |
| H3B | 0.4080 | 0.2990 | −0.2465 | 0.056* | |
| C4 | 0.4703 (3) | 0.4995 (3) | −0.22330 (15) | 0.0454 (7) | |
| C5 | 0.5409 (3) | 0.5307 (4) | −0.26616 (17) | 0.0646 (10) | |
| H5B | 0.5556 | 0.4714 | −0.2996 | 0.078* | |
| C6 | 0.5863 (3) | 0.6656 (4) | −0.25109 (18) | 0.0690 (10) | |
| H6B | 0.6366 | 0.7136 | −0.2725 | 0.083* | |
| C7 | 0.5439 (3) | 0.7142 (4) | −0.19947 (16) | 0.0620 (9) | |
| H7B | 0.5604 | 0.8023 | −0.1789 | 0.074* | |
| C8 | 0.2084 (2) | 0.2788 (3) | −0.04489 (15) | 0.0553 (8) | |
| H8A | 0.1423 | 0.2371 | −0.0799 | 0.066* | |
| H8B | 0.2117 | 0.3782 | −0.0555 | 0.066* | |
| C9 | 0.1833 (3) | 0.2634 (3) | 0.02435 (15) | 0.0536 (8) | |
| H9A | 0.2556 | 0.2865 | 0.0606 | 0.064* | |
| H9B | 0.1199 | 0.3285 | 0.0274 | 0.064* | |
| C10 | 0.2245 (3) | 0.0402 (4) | 0.07166 (15) | 0.0513 (8) | |
| H10A | 0.2993 | 0.0804 | 0.0929 | 0.062* | |
| C11 | 0.2099 (3) | −0.1055 (3) | 0.08539 (15) | 0.0483 (8) | |
| C12 | 0.2924 (3) | −0.2002 (4) | 0.12203 (16) | 0.0643 (10) | |
| H12A | 0.3723 | −0.1802 | 0.1455 | 0.077* | |
| C13 | 0.2371 (3) | −0.3313 (4) | 0.11832 (18) | 0.0688 (10) | |
| H13A | 0.2724 | −0.4144 | 0.1388 | 0.083* | |
| C14 | 0.1217 (3) | −0.3143 (4) | 0.07898 (17) | 0.0640 (9) | |
| H14A | 0.0634 | −0.3849 | 0.0675 | 0.077* | |
| C15 | 0.4299 (2) | 0.2945 (3) | −0.01526 (14) | 0.0475 (8) | |
| H15A | 0.4098 | 0.3670 | 0.0135 | 0.057* | |
| H15B | 0.4583 | 0.3405 | −0.0507 | 0.057* | |
| C16 | 0.5290 (2) | 0.2023 (3) | 0.02762 (15) | 0.0508 (8) | |
| H16A | 0.4952 | 0.1410 | 0.0560 | 0.061* | |
| H16B | 0.5606 | 0.1433 | −0.0026 | 0.061* | |
| C17 | 0.7349 (3) | 0.2535 (3) | 0.07048 (14) | 0.0448 (7) | |
| H17A | 0.7445 | 0.1841 | 0.0399 | 0.054* | |
| C18 | 0.8415 (2) | 0.3190 (3) | 0.11291 (13) | 0.0422 (7) | |
| C19 | 0.9607 (3) | 0.2851 (4) | 0.12042 (15) | 0.0558 (9) | |
| H19A | 0.9887 | 0.2142 | 0.0970 | 0.067* | |
| C20 | 1.0321 (3) | 0.3751 (4) | 0.16917 (17) | 0.0640 (10) | |
| H20A | 1.1161 | 0.3751 | 0.1848 | 0.077* | |
| C21 | 0.9557 (3) | 0.4631 (4) | 0.18960 (16) | 0.0587 (9) | |
| H21A | 0.9787 | 0.5355 | 0.2215 | 0.070* |
| N1 | 0.0367 (14) | 0.0511 (15) | 0.0462 (14) | −0.0059 (12) | 0.0069 (11) | 0.0022 (14) |
| N2 | 0.0470 (15) | 0.0457 (15) | 0.0387 (14) | −0.0016 (13) | 0.0110 (11) | −0.0027 (13) |
| N3 | 0.0465 (15) | 0.0601 (17) | 0.0389 (14) | −0.0048 (14) | 0.0076 (12) | 0.0047 (15) |
| N4 | 0.0402 (14) | 0.0572 (17) | 0.0477 (15) | −0.0037 (13) | 0.0154 (12) | 0.0050 (14) |
| N5 | 0.0446 (16) | 0.0555 (17) | 0.0549 (16) | 0.0010 (13) | 0.0104 (12) | 0.0092 (15) |
| N6 | 0.0392 (15) | 0.0470 (14) | 0.0438 (14) | −0.0015 (12) | 0.0066 (11) | −0.0065 (13) |
| N7 | 0.0389 (14) | 0.0478 (15) | 0.0489 (15) | −0.0009 (12) | 0.0118 (11) | 0.0055 (14) |
| C1 | 0.0474 (18) | 0.0435 (18) | 0.061 (2) | −0.0076 (16) | 0.0084 (15) | 0.0023 (18) |
| C2 | 0.0528 (19) | 0.0506 (19) | 0.0442 (18) | −0.0093 (16) | 0.0080 (15) | −0.0090 (17) |
| C3 | 0.0523 (19) | 0.0499 (19) | 0.0377 (16) | 0.0076 (17) | 0.0103 (15) | −0.0031 (16) |
| C4 | 0.0474 (18) | 0.0479 (19) | 0.0404 (17) | 0.0032 (16) | 0.0110 (14) | 0.0010 (17) |
| C5 | 0.066 (2) | 0.076 (3) | 0.060 (2) | 0.006 (2) | 0.0314 (18) | 0.007 (2) |
| C6 | 0.063 (2) | 0.086 (3) | 0.061 (2) | −0.011 (2) | 0.0206 (18) | 0.018 (2) |
| C7 | 0.062 (2) | 0.060 (2) | 0.055 (2) | −0.0187 (19) | 0.0002 (17) | 0.010 (2) |
| C8 | 0.0402 (18) | 0.067 (2) | 0.0571 (19) | −0.0017 (17) | 0.0110 (15) | 0.0140 (19) |
| C9 | 0.0436 (18) | 0.064 (2) | 0.0541 (19) | −0.0028 (17) | 0.0150 (15) | 0.0061 (18) |
| C10 | 0.0402 (18) | 0.072 (2) | 0.0429 (18) | −0.0119 (18) | 0.0141 (14) | −0.0050 (19) |
| C11 | 0.0395 (18) | 0.062 (2) | 0.0438 (18) | −0.0033 (17) | 0.0114 (14) | 0.0017 (18) |
| C12 | 0.0400 (19) | 0.088 (3) | 0.059 (2) | 0.004 (2) | 0.0024 (16) | 0.012 (2) |
| C13 | 0.063 (2) | 0.067 (2) | 0.074 (2) | 0.014 (2) | 0.0140 (19) | 0.018 (2) |
| C14 | 0.058 (2) | 0.062 (2) | 0.070 (2) | −0.0003 (19) | 0.0128 (19) | 0.009 (2) |
| C15 | 0.0443 (18) | 0.0481 (18) | 0.0476 (17) | −0.0060 (15) | 0.0087 (14) | 0.0018 (16) |
| C16 | 0.0450 (18) | 0.0510 (19) | 0.0530 (18) | −0.0034 (16) | 0.0077 (14) | −0.0060 (17) |
| C17 | 0.0464 (19) | 0.0486 (18) | 0.0404 (16) | 0.0026 (16) | 0.0134 (14) | −0.0026 (16) |
| C18 | 0.0435 (19) | 0.0478 (19) | 0.0370 (16) | −0.0018 (15) | 0.0141 (14) | 0.0012 (16) |
| C19 | 0.0418 (19) | 0.075 (2) | 0.056 (2) | 0.0056 (18) | 0.0231 (15) | 0.007 (2) |
| C20 | 0.0361 (18) | 0.080 (3) | 0.073 (2) | −0.004 (2) | 0.0112 (17) | 0.013 (2) |
| C21 | 0.047 (2) | 0.058 (2) | 0.061 (2) | −0.0204 (18) | −0.0026 (16) | 0.0047 (19) |
| N1—C1 | 1.451 (3) | C6—H6B | 0.9300 |
| N1—C15 | 1.460 (3) | C7—H7B | 0.9300 |
| N1—C8 | 1.465 (3) | C8—C9 | 1.513 (4) |
| N2—C3 | 1.279 (3) | C8—H8A | 0.9700 |
| N2—C2 | 1.459 (3) | C8—H8B | 0.9700 |
| N3—C7 | 1.357 (4) | C9—H9A | 0.9700 |
| N3—C4 | 1.358 (3) | C9—H9B | 0.9700 |
| N3—H3A | 0.8600 | C10—C11 | 1.429 (4) |
| N4—C10 | 1.264 (3) | C10—H10A | 0.9300 |
| N4—C9 | 1.454 (4) | C11—C12 | 1.368 (4) |
| N5—C14 | 1.352 (4) | C12—C13 | 1.388 (4) |
| N5—C11 | 1.362 (3) | C12—H12A | 0.9300 |
| N5—H5A | 0.8600 | C13—C14 | 1.356 (4) |
| N6—C17 | 1.267 (3) | C13—H13A | 0.9300 |
| N6—C16 | 1.464 (3) | C14—H14A | 0.9300 |
| N7—C21 | 1.357 (3) | C15—C16 | 1.506 (3) |
| N7—C18 | 1.357 (3) | C15—H15A | 0.9700 |
| N7—H7A | 0.8600 | C15—H15B | 0.9700 |
| C1—C2 | 1.522 (4) | C16—H16A | 0.9700 |
| C1—H1A | 0.9700 | C16—H16B | 0.9700 |
| C1—H1B | 0.9700 | C17—C18 | 1.430 (4) |
| C2—H2B | 0.9700 | C17—H17A | 0.9300 |
| C2—H2C | 0.9700 | C18—C19 | 1.374 (4) |
| C3—C4 | 1.430 (4) | C19—C20 | 1.389 (4) |
| C3—H3B | 0.9300 | C19—H19A | 0.9300 |
| C4—C5 | 1.373 (4) | C20—C21 | 1.356 (4) |
| C5—C6 | 1.385 (4) | C20—H20A | 0.9300 |
| C5—H5B | 0.9300 | C21—H21A | 0.9300 |
| C6—C7 | 1.350 (4) | ||
| C1—N1—C15 | 115.1 (2) | N4—C9—C8 | 110.3 (3) |
| C1—N1—C8 | 115.6 (2) | N4—C9—H9A | 109.6 |
| C15—N1—C8 | 114.1 (2) | C8—C9—H9A | 109.6 |
| C3—N2—C2 | 117.7 (2) | N4—C9—H9B | 109.6 |
| C7—N3—C4 | 108.8 (3) | C8—C9—H9B | 109.6 |
| C7—N3—H3A | 125.6 | H9A—C9—H9B | 108.1 |
| C4—N3—H3A | 125.6 | N4—C10—C11 | 126.5 (3) |
| C10—N4—C9 | 117.0 (3) | N4—C10—H10A | 116.7 |
| C14—N5—C11 | 109.3 (3) | C11—C10—H10A | 116.7 |
| C14—N5—H5A | 125.4 | N5—C11—C12 | 106.6 (3) |
| C11—N5—H5A | 125.4 | N5—C11—C10 | 123.5 (3) |
| C17—N6—C16 | 117.5 (2) | C12—C11—C10 | 129.8 (3) |
| C21—N7—C18 | 108.9 (3) | C11—C12—C13 | 108.7 (3) |
| C21—N7—H7A | 125.5 | C11—C12—H12A | 125.6 |
| C18—N7—H7A | 125.5 | C13—C12—H12A | 125.6 |
| N1—C1—C2 | 118.6 (2) | C14—C13—C12 | 106.5 (3) |
| N1—C1—H1A | 107.7 | C14—C13—H13A | 126.7 |
| C2—C1—H1A | 107.7 | C12—C13—H13A | 126.7 |
| N1—C1—H1B | 107.7 | N5—C14—C13 | 108.8 (3) |
| C2—C1—H1B | 107.7 | N5—C14—H14A | 125.6 |
| H1A—C1—H1B | 107.1 | C13—C14—H14A | 125.6 |
| N2—C2—C1 | 113.5 (2) | N1—C15—C16 | 110.9 (2) |
| N2—C2—H2B | 108.9 | N1—C15—H15A | 109.5 |
| C1—C2—H2B | 108.9 | C16—C15—H15A | 109.5 |
| N2—C2—H2C | 108.9 | N1—C15—H15B | 109.5 |
| C1—C2—H2C | 108.9 | C16—C15—H15B | 109.5 |
| H2B—C2—H2C | 107.7 | H15A—C15—H15B | 108.0 |
| N2—C3—C4 | 123.7 (3) | N6—C16—C15 | 112.6 (2) |
| N2—C3—H3B | 118.2 | N6—C16—H16A | 109.1 |
| C4—C3—H3B | 118.2 | C15—C16—H16A | 109.1 |
| N3—C4—C5 | 107.0 (3) | N6—C16—H16B | 109.1 |
| N3—C4—C3 | 122.7 (3) | C15—C16—H16B | 109.1 |
| C5—C4—C3 | 130.3 (3) | H16A—C16—H16B | 107.8 |
| C4—C5—C6 | 108.2 (3) | N6—C17—C18 | 124.1 (3) |
| C4—C5—H5B | 125.9 | N6—C17—H17A | 117.9 |
| C6—C5—H5B | 125.9 | C18—C17—H17A | 117.9 |
| C7—C6—C5 | 106.9 (3) | N7—C18—C19 | 107.2 (3) |
| C7—C6—H6B | 126.5 | N7—C18—C17 | 123.8 (3) |
| C5—C6—H6B | 126.5 | C19—C18—C17 | 128.9 (3) |
| C6—C7—N3 | 109.0 (3) | C18—C19—C20 | 108.1 (3) |
| C6—C7—H7B | 125.5 | C18—C19—H19A | 125.9 |
| N3—C7—H7B | 125.5 | C20—C19—H19A | 125.9 |
| N1—C8—C9 | 112.7 (2) | C21—C20—C19 | 106.8 (3) |
| N1—C8—H8A | 109.1 | C21—C20—H20A | 126.6 |
| C9—C8—H8A | 109.1 | C19—C20—H20A | 126.6 |
| N1—C8—H8B | 109.1 | C20—C21—N7 | 108.9 (3) |
| C9—C8—H8B | 109.1 | C20—C21—H21A | 125.5 |
| H8A—C8—H8B | 107.8 | N7—C21—H21A | 125.5 |
| C15—N1—C1—C2 | −87.6 (3) | N4—C10—C11—N5 | −1.3 (5) |
| C8—N1—C1—C2 | 48.9 (3) | N4—C10—C11—C12 | 175.1 (3) |
| C3—N2—C2—C1 | 110.2 (3) | N5—C11—C12—C13 | −0.3 (4) |
| N1—C1—C2—N2 | 56.6 (3) | C10—C11—C12—C13 | −177.2 (3) |
| C2—N2—C3—C4 | −178.6 (3) | C11—C12—C13—C14 | 0.4 (4) |
| C7—N3—C4—C5 | 0.0 (3) | C11—N5—C14—C13 | 0.1 (4) |
| C7—N3—C4—C3 | −179.5 (2) | C12—C13—C14—N5 | −0.3 (4) |
| N2—C3—C4—N3 | 3.4 (4) | C1—N1—C15—C16 | −85.5 (3) |
| N2—C3—C4—C5 | −175.9 (3) | C8—N1—C15—C16 | 137.4 (2) |
| N3—C4—C5—C6 | −0.2 (4) | C17—N6—C16—C15 | −129.8 (3) |
| C3—C4—C5—C6 | 179.2 (3) | N1—C15—C16—N6 | −167.7 (2) |
| C4—C5—C6—C7 | 0.3 (4) | C16—N6—C17—C18 | −177.0 (3) |
| C5—C6—C7—N3 | −0.3 (4) | C21—N7—C18—C19 | 0.4 (3) |
| C4—N3—C7—C6 | 0.2 (3) | C21—N7—C18—C17 | 178.7 (3) |
| C1—N1—C8—C9 | 144.0 (3) | N6—C17—C18—N7 | −4.9 (4) |
| C15—N1—C8—C9 | −79.1 (3) | N6—C17—C18—C19 | 173.0 (3) |
| C10—N4—C9—C8 | 102.4 (3) | N7—C18—C19—C20 | 0.3 (3) |
| N1—C8—C9—N4 | −73.9 (3) | C17—C18—C19—C20 | −177.9 (3) |
| C9—N4—C10—C11 | −177.0 (3) | C18—C19—C20—C21 | −0.9 (4) |
| C14—N5—C11—C12 | 0.1 (3) | C19—C20—C21—N7 | 1.1 (4) |
| C14—N5—C11—C10 | 177.3 (3) | C18—N7—C21—C20 | −0.9 (3) |
| H··· | ||||
| C15—H15B···N2 | 0.97 | 2.59 | 3.246 (4) | 125 |
| N3—H3A···N6i | 0.86 | 2.14 | 2.956 (3) | 159 |
| N5—H5A···N4ii | 0.86 | 2.20 | 3.029 (3) | 163 |
| N7—H7A···N2i | 0.86 | 2.13 | 2.940 (3) | 158 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C15—H15 | 0.97 | 2.59 | 3.246 (4) | 125 |
| N3—H3 | 0.86 | 2.14 | 2.956 (3) | 159 |
| N5—H5 | 0.86 | 2.20 | 3.029 (3) | 163 |
| N7—H7 | 0.86 | 2.13 | 2.940 (3) | 158 |
Symmetry codes: (i) ; (ii) .