Literature DB >> 21201960

Tris[2-(pyrrol-2-ylmethyl-eneamino)eth-yl]amine.

Yaobing Wang1, Tongling Liang, Jiannian Yao, Tianyou Zhai, Hongbing Fu.   

Abstract

The title compound, C(21)H(27)N(7), was synthesized by reaction of tris-(2-amino-ethyl)amine and pyrrole-2-carbaldehyde in ethanol at room temperature. The structure is stabilized by intra- and inter-molecular C-H⋯N and N-H⋯N hydrogen-bonding inter-actions.

Entities:  

Year:  2008        PMID: 21201960      PMCID: PMC2960820          DOI: 10.1107/S1600536807065907

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the self-assembly of pyrrole Schiff basemetal complexes, see: Wu et al. (2003 ▶, 2006 ▶); Yang, Chen et al. (2004 ▶); Yang, Shan et al. (2004 ▶).

Experimental

Crystal data

C21H27N7 M = 377.50 Monoclinic, a = 11.494 (2) Å b = 9.4875 (19) Å c = 20.232 (4) Å β = 105.97 (3)° V = 2121.1 (8) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 (2) K 0.80 × 0.08 × 0.05 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.943, T max = 0.995 19300 measured reflections 4832 independent reflections 1905 reflections with I > 2σ(I) R int = 0.0685

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.142 S = 1.01 4832 reflections 253 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.19 e Å−3 Data collection: RAPID-AUTO (Rigaku, 2001 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 1994 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807065907/rz2179sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807065907/rz2179Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H27N7F000 = 808
Mr = 377.50Dx = 1.182 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 19300 reflections
a = 11.494 (2) Åθ = 1.9–27.5º
b = 9.4875 (19) ŵ = 0.08 mm1
c = 20.232 (4) ÅT = 293 (2) K
β = 105.97 (3)ºNeedle, brown
V = 2121.1 (8) Å30.80 × 0.08 × 0.05 mm
Z = 4
Rigaku R-AXIS RAPID IP diffractometer4832 independent reflections
Radiation source: Rotating Anode1905 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.069
T = 293(2) Kθmax = 27.5º
oscillation scansθmin = 1.9º
Absorption correction: multi-scan(ABSCOR; Higashi, 1995)h = −14→14
Tmin = 0.943, Tmax = 0.995k = 0→12
19300 measured reflectionsl = −13→26
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.142  w = 1/[σ2(Fo2) + (0.0318P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
4832 reflectionsΔρmax = 0.20 e Å3
253 parametersΔρmin = −0.18 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.32208 (19)0.2117 (2)−0.04712 (11)0.0456 (6)
N20.3346 (2)0.3634 (2)−0.17842 (11)0.0439 (6)
N30.47309 (19)0.6138 (3)−0.18248 (11)0.0493 (7)
H3A0.43610.6213−0.15100.059*
N40.1461 (2)0.1199 (3)0.03356 (12)0.0477 (6)
N50.1051 (2)−0.1779 (3)0.05915 (12)0.0523 (7)
H5A0.0388−0.14260.03390.063*
N60.6284 (2)0.2840 (2)0.07191 (11)0.0443 (6)
N70.8400 (2)0.4282 (2)0.15596 (12)0.0453 (6)
H7A0.77610.46880.16110.054*
C10.3214 (3)0.1456 (3)−0.11191 (15)0.0520 (8)
H1A0.27440.0595−0.11590.062*
H1B0.40390.1183−0.10930.062*
C20.2728 (3)0.2291 (3)−0.17799 (14)0.0503 (8)
H2B0.28100.1726−0.21640.060*
H2C0.18730.2469−0.18450.060*
C30.4025 (3)0.3753 (3)−0.21867 (14)0.0470 (8)
H3B0.40800.2990−0.24650.056*
C40.4703 (3)0.4995 (3)−0.22330 (15)0.0454 (7)
C50.5409 (3)0.5307 (4)−0.26616 (17)0.0646 (10)
H5B0.55560.4714−0.29960.078*
C60.5863 (3)0.6656 (4)−0.25109 (18)0.0690 (10)
H6B0.63660.7136−0.27250.083*
C70.5439 (3)0.7142 (4)−0.19947 (16)0.0620 (9)
H7B0.56040.8023−0.17890.074*
C80.2084 (2)0.2788 (3)−0.04489 (15)0.0553 (8)
H8A0.14230.2371−0.07990.066*
H8B0.21170.3782−0.05550.066*
C90.1833 (3)0.2634 (3)0.02435 (15)0.0536 (8)
H9A0.25560.28650.06060.064*
H9B0.11990.32850.02740.064*
C100.2245 (3)0.0402 (4)0.07166 (15)0.0513 (8)
H10A0.29930.08040.09290.062*
C110.2099 (3)−0.1055 (3)0.08539 (15)0.0483 (8)
C120.2924 (3)−0.2002 (4)0.12203 (16)0.0643 (10)
H12A0.3723−0.18020.14550.077*
C130.2371 (3)−0.3313 (4)0.11832 (18)0.0688 (10)
H13A0.2724−0.41440.13880.083*
C140.1217 (3)−0.3143 (4)0.07898 (17)0.0640 (9)
H14A0.0634−0.38490.06750.077*
C150.4299 (2)0.2945 (3)−0.01526 (14)0.0475 (8)
H15A0.40980.36700.01350.057*
H15B0.45830.3405−0.05070.057*
C160.5290 (2)0.2023 (3)0.02762 (15)0.0508 (8)
H16A0.49520.14100.05600.061*
H16B0.56060.1433−0.00260.061*
C170.7349 (3)0.2535 (3)0.07048 (14)0.0448 (7)
H17A0.74450.18410.03990.054*
C180.8415 (2)0.3190 (3)0.11291 (13)0.0422 (7)
C190.9607 (3)0.2851 (4)0.12042 (15)0.0558 (9)
H19A0.98870.21420.09700.067*
C201.0321 (3)0.3751 (4)0.16917 (17)0.0640 (10)
H20A1.11610.37510.18480.077*
C210.9557 (3)0.4631 (4)0.18960 (16)0.0587 (9)
H21A0.97870.53550.22150.070*
U11U22U33U12U13U23
N10.0367 (14)0.0511 (15)0.0462 (14)−0.0059 (12)0.0069 (11)0.0022 (14)
N20.0470 (15)0.0457 (15)0.0387 (14)−0.0016 (13)0.0110 (11)−0.0027 (13)
N30.0465 (15)0.0601 (17)0.0389 (14)−0.0048 (14)0.0076 (12)0.0047 (15)
N40.0402 (14)0.0572 (17)0.0477 (15)−0.0037 (13)0.0154 (12)0.0050 (14)
N50.0446 (16)0.0555 (17)0.0549 (16)0.0010 (13)0.0104 (12)0.0092 (15)
N60.0392 (15)0.0470 (14)0.0438 (14)−0.0015 (12)0.0066 (11)−0.0065 (13)
N70.0389 (14)0.0478 (15)0.0489 (15)−0.0009 (12)0.0118 (11)0.0055 (14)
C10.0474 (18)0.0435 (18)0.061 (2)−0.0076 (16)0.0084 (15)0.0023 (18)
C20.0528 (19)0.0506 (19)0.0442 (18)−0.0093 (16)0.0080 (15)−0.0090 (17)
C30.0523 (19)0.0499 (19)0.0377 (16)0.0076 (17)0.0103 (15)−0.0031 (16)
C40.0474 (18)0.0479 (19)0.0404 (17)0.0032 (16)0.0110 (14)0.0010 (17)
C50.066 (2)0.076 (3)0.060 (2)0.006 (2)0.0314 (18)0.007 (2)
C60.063 (2)0.086 (3)0.061 (2)−0.011 (2)0.0206 (18)0.018 (2)
C70.062 (2)0.060 (2)0.055 (2)−0.0187 (19)0.0002 (17)0.010 (2)
C80.0402 (18)0.067 (2)0.0571 (19)−0.0017 (17)0.0110 (15)0.0140 (19)
C90.0436 (18)0.064 (2)0.0541 (19)−0.0028 (17)0.0150 (15)0.0061 (18)
C100.0402 (18)0.072 (2)0.0429 (18)−0.0119 (18)0.0141 (14)−0.0050 (19)
C110.0395 (18)0.062 (2)0.0438 (18)−0.0033 (17)0.0114 (14)0.0017 (18)
C120.0400 (19)0.088 (3)0.059 (2)0.004 (2)0.0024 (16)0.012 (2)
C130.063 (2)0.067 (2)0.074 (2)0.014 (2)0.0140 (19)0.018 (2)
C140.058 (2)0.062 (2)0.070 (2)−0.0003 (19)0.0128 (19)0.009 (2)
C150.0443 (18)0.0481 (18)0.0476 (17)−0.0060 (15)0.0087 (14)0.0018 (16)
C160.0450 (18)0.0510 (19)0.0530 (18)−0.0034 (16)0.0077 (14)−0.0060 (17)
C170.0464 (19)0.0486 (18)0.0404 (16)0.0026 (16)0.0134 (14)−0.0026 (16)
C180.0435 (19)0.0478 (19)0.0370 (16)−0.0018 (15)0.0141 (14)0.0012 (16)
C190.0418 (19)0.075 (2)0.056 (2)0.0056 (18)0.0231 (15)0.007 (2)
C200.0361 (18)0.080 (3)0.073 (2)−0.004 (2)0.0112 (17)0.013 (2)
C210.047 (2)0.058 (2)0.061 (2)−0.0204 (18)−0.0026 (16)0.0047 (19)
N1—C11.451 (3)C6—H6B0.9300
N1—C151.460 (3)C7—H7B0.9300
N1—C81.465 (3)C8—C91.513 (4)
N2—C31.279 (3)C8—H8A0.9700
N2—C21.459 (3)C8—H8B0.9700
N3—C71.357 (4)C9—H9A0.9700
N3—C41.358 (3)C9—H9B0.9700
N3—H3A0.8600C10—C111.429 (4)
N4—C101.264 (3)C10—H10A0.9300
N4—C91.454 (4)C11—C121.368 (4)
N5—C141.352 (4)C12—C131.388 (4)
N5—C111.362 (3)C12—H12A0.9300
N5—H5A0.8600C13—C141.356 (4)
N6—C171.267 (3)C13—H13A0.9300
N6—C161.464 (3)C14—H14A0.9300
N7—C211.357 (3)C15—C161.506 (3)
N7—C181.357 (3)C15—H15A0.9700
N7—H7A0.8600C15—H15B0.9700
C1—C21.522 (4)C16—H16A0.9700
C1—H1A0.9700C16—H16B0.9700
C1—H1B0.9700C17—C181.430 (4)
C2—H2B0.9700C17—H17A0.9300
C2—H2C0.9700C18—C191.374 (4)
C3—C41.430 (4)C19—C201.389 (4)
C3—H3B0.9300C19—H19A0.9300
C4—C51.373 (4)C20—C211.356 (4)
C5—C61.385 (4)C20—H20A0.9300
C5—H5B0.9300C21—H21A0.9300
C6—C71.350 (4)
C1—N1—C15115.1 (2)N4—C9—C8110.3 (3)
C1—N1—C8115.6 (2)N4—C9—H9A109.6
C15—N1—C8114.1 (2)C8—C9—H9A109.6
C3—N2—C2117.7 (2)N4—C9—H9B109.6
C7—N3—C4108.8 (3)C8—C9—H9B109.6
C7—N3—H3A125.6H9A—C9—H9B108.1
C4—N3—H3A125.6N4—C10—C11126.5 (3)
C10—N4—C9117.0 (3)N4—C10—H10A116.7
C14—N5—C11109.3 (3)C11—C10—H10A116.7
C14—N5—H5A125.4N5—C11—C12106.6 (3)
C11—N5—H5A125.4N5—C11—C10123.5 (3)
C17—N6—C16117.5 (2)C12—C11—C10129.8 (3)
C21—N7—C18108.9 (3)C11—C12—C13108.7 (3)
C21—N7—H7A125.5C11—C12—H12A125.6
C18—N7—H7A125.5C13—C12—H12A125.6
N1—C1—C2118.6 (2)C14—C13—C12106.5 (3)
N1—C1—H1A107.7C14—C13—H13A126.7
C2—C1—H1A107.7C12—C13—H13A126.7
N1—C1—H1B107.7N5—C14—C13108.8 (3)
C2—C1—H1B107.7N5—C14—H14A125.6
H1A—C1—H1B107.1C13—C14—H14A125.6
N2—C2—C1113.5 (2)N1—C15—C16110.9 (2)
N2—C2—H2B108.9N1—C15—H15A109.5
C1—C2—H2B108.9C16—C15—H15A109.5
N2—C2—H2C108.9N1—C15—H15B109.5
C1—C2—H2C108.9C16—C15—H15B109.5
H2B—C2—H2C107.7H15A—C15—H15B108.0
N2—C3—C4123.7 (3)N6—C16—C15112.6 (2)
N2—C3—H3B118.2N6—C16—H16A109.1
C4—C3—H3B118.2C15—C16—H16A109.1
N3—C4—C5107.0 (3)N6—C16—H16B109.1
N3—C4—C3122.7 (3)C15—C16—H16B109.1
C5—C4—C3130.3 (3)H16A—C16—H16B107.8
C4—C5—C6108.2 (3)N6—C17—C18124.1 (3)
C4—C5—H5B125.9N6—C17—H17A117.9
C6—C5—H5B125.9C18—C17—H17A117.9
C7—C6—C5106.9 (3)N7—C18—C19107.2 (3)
C7—C6—H6B126.5N7—C18—C17123.8 (3)
C5—C6—H6B126.5C19—C18—C17128.9 (3)
C6—C7—N3109.0 (3)C18—C19—C20108.1 (3)
C6—C7—H7B125.5C18—C19—H19A125.9
N3—C7—H7B125.5C20—C19—H19A125.9
N1—C8—C9112.7 (2)C21—C20—C19106.8 (3)
N1—C8—H8A109.1C21—C20—H20A126.6
C9—C8—H8A109.1C19—C20—H20A126.6
N1—C8—H8B109.1C20—C21—N7108.9 (3)
C9—C8—H8B109.1C20—C21—H21A125.5
H8A—C8—H8B107.8N7—C21—H21A125.5
C15—N1—C1—C2−87.6 (3)N4—C10—C11—N5−1.3 (5)
C8—N1—C1—C248.9 (3)N4—C10—C11—C12175.1 (3)
C3—N2—C2—C1110.2 (3)N5—C11—C12—C13−0.3 (4)
N1—C1—C2—N256.6 (3)C10—C11—C12—C13−177.2 (3)
C2—N2—C3—C4−178.6 (3)C11—C12—C13—C140.4 (4)
C7—N3—C4—C50.0 (3)C11—N5—C14—C130.1 (4)
C7—N3—C4—C3−179.5 (2)C12—C13—C14—N5−0.3 (4)
N2—C3—C4—N33.4 (4)C1—N1—C15—C16−85.5 (3)
N2—C3—C4—C5−175.9 (3)C8—N1—C15—C16137.4 (2)
N3—C4—C5—C6−0.2 (4)C17—N6—C16—C15−129.8 (3)
C3—C4—C5—C6179.2 (3)N1—C15—C16—N6−167.7 (2)
C4—C5—C6—C70.3 (4)C16—N6—C17—C18−177.0 (3)
C5—C6—C7—N3−0.3 (4)C21—N7—C18—C190.4 (3)
C4—N3—C7—C60.2 (3)C21—N7—C18—C17178.7 (3)
C1—N1—C8—C9144.0 (3)N6—C17—C18—N7−4.9 (4)
C15—N1—C8—C9−79.1 (3)N6—C17—C18—C19173.0 (3)
C10—N4—C9—C8102.4 (3)N7—C18—C19—C200.3 (3)
N1—C8—C9—N4−73.9 (3)C17—C18—C19—C20−177.9 (3)
C9—N4—C10—C11−177.0 (3)C18—C19—C20—C21−0.9 (4)
C14—N5—C11—C120.1 (3)C19—C20—C21—N71.1 (4)
C14—N5—C11—C10177.3 (3)C18—N7—C21—C20−0.9 (3)
D—H···AD—HH···AD···AD—H···A
C15—H15B···N20.972.593.246 (4)125
N3—H3A···N6i0.862.142.956 (3)159
N5—H5A···N4ii0.862.203.029 (3)163
N7—H7A···N2i0.862.132.940 (3)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15B⋯N20.972.593.246 (4)125
N3—H3A⋯N6i0.862.142.956 (3)159
N5—H5A⋯N4ii0.862.203.029 (3)163
N7—H7A⋯N2i0.862.132.940 (3)158

Symmetry codes: (i) ; (ii) .

  2 in total

1.  Double-stranded helicates, triangles, and squares formed by the self-assembly of pyrrol-2-ylmethyleneamines and ZnII ions.

Authors:  Zhikun Wu; Qingqi Chen; Shaoxiang Xiong; Bin Xin; Zhenwen Zhao; Lijin Jiang; Jin Shi Ma
Journal:  Angew Chem Int Ed Engl       Date:  2003-07-21       Impact factor: 15.336

2.  Ratiometric Zn2+ sensor and strategy for Hg2+ selective recognition by central metal ion replacement.

Authors:  Zhikun Wu; Yongfang Zhang; Jin Shi Ma; Guoqiang Yang
Journal:  Inorg Chem       Date:  2006-04-17       Impact factor: 5.165

  2 in total

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