| Literature DB >> 21201942 |
Jing Wang, Sai-Nan Ni, Daqing Shi.
Abstract
The title compound, C(20)H(19)N(3)O(3)·C(3)H(7)NO, was synthesized by the reaction of 6-amino-pyrimidine-2,4(1H,3H)-dione and 4-methyl-benzaldehyde with 5,5-dimethyl-1,3-cyclo-hexa-nedione in 1-butyl-3-methyl-imidazolium bromide at 363 K. The pyrimidine ring adopts a half-chair conformation while the six-membered ring fused to the pyridine ring adopts a skew-boat conformation. The dihedral angle between the pyridine ring and the attached benzene ring is 2.38(8)°Entities:
Year: 2008 PMID: 21201942 PMCID: PMC2960831 DOI: 10.1107/S1600536808002924
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H19N3O3·C3H7NO | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2318 reflections | |
| θ = 2.5–26.3º | |
| µ = 0.09 mm−1 | |
| α = 95.898 (3)º | |
| β = 93.115 (3)º | Block, colorless |
| γ = 94.719 (3)º | 0.24 × 0.16 × 0.12 mm |
| Bruker SMART 1000 diffractometer | 4285 independent reflections |
| Radiation source: fine-focus sealed tube | 2833 reflections with |
| Monochromator: graphite | |
| θmax = 26.0º | |
| φ and ω scans | θmin = 1.7º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 6083 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 4285 reflections | Δρmax = 0.25 e Å−3 |
| 285 parameters | Δρmin = −0.23 e Å−3 |
| 1 restraint | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
| O1 | 0.66314 (15) | 0.41510 (14) | 0.49822 (12) | 0.0587 (4) | |
| O2 | 0.61458 (17) | 0.01747 (15) | 0.62264 (14) | 0.0726 (5) | |
| O3 | 0.1315 (2) | −0.03738 (19) | 0.88397 (19) | 0.1117 (8) | |
| N1 | 0.63982 (17) | 0.22017 (16) | 0.56995 (13) | 0.0485 (4) | |
| H1 | 0.7300 | 0.2042 | 0.5431 | 0.058* | |
| N2 | 0.45129 (17) | 0.36219 (16) | 0.58594 (14) | 0.0503 (4) | |
| H2 | 0.4112 | 0.4358 | 0.5704 | 0.060* | |
| N3 | 0.24137 (17) | 0.32697 (15) | 0.68299 (13) | 0.0475 (4) | |
| C1 | 0.5892 (2) | 0.33743 (19) | 0.54821 (16) | 0.0456 (5) | |
| C2 | 0.5624 (2) | 0.1225 (2) | 0.62047 (16) | 0.0474 (5) | |
| C3 | 0.42031 (19) | 0.15976 (18) | 0.66859 (14) | 0.0411 (4) | |
| C4 | 0.3337 (2) | 0.08197 (18) | 0.73401 (14) | 0.0404 (4) | |
| C5 | 0.1967 (2) | 0.12798 (18) | 0.76963 (15) | 0.0438 (4) | |
| C6 | 0.0920 (2) | 0.0536 (2) | 0.83849 (18) | 0.0556 (5) | |
| C7 | −0.0623 (2) | 0.10073 (19) | 0.85164 (18) | 0.0533 (5) | |
| H7A | −0.1091 | 0.0604 | 0.9108 | 0.064* | |
| H7B | −0.1259 | 0.0737 | 0.7851 | 0.064* | |
| C8 | −0.0549 (2) | 0.25028 (19) | 0.87620 (16) | 0.0473 (5) | |
| C9 | 0.0437 (3) | 0.2941 (2) | 0.98100 (19) | 0.0691 (6) | |
| H9A | 0.0456 | 0.3875 | 0.9972 | 0.104* | |
| H9B | 0.1455 | 0.2703 | 0.9716 | 0.104* | |
| H9C | 0.0023 | 0.2520 | 1.0402 | 0.104* | |
| C10 | −0.2145 (2) | 0.2942 (2) | 0.8905 (2) | 0.0650 (6) | |
| H10A | −0.2567 | 0.2574 | 0.9520 | 0.098* | |
| H10B | −0.2785 | 0.2647 | 0.8256 | 0.098* | |
| H10C | −0.2088 | 0.3882 | 0.9029 | 0.098* | |
| C11 | 0.0129 (2) | 0.3077 (2) | 0.77834 (18) | 0.0544 (5) | |
| H11A | −0.0631 | 0.2944 | 0.7174 | 0.065* | |
| H11B | 0.0350 | 0.4016 | 0.7966 | 0.065* | |
| C12 | 0.1560 (2) | 0.25081 (18) | 0.74199 (16) | 0.0458 (5) | |
| C13 | 0.36838 (19) | 0.27982 (18) | 0.64708 (15) | 0.0420 (4) | |
| C14 | 0.38754 (19) | −0.04296 (18) | 0.76792 (14) | 0.0398 (4) | |
| C15 | 0.3251 (2) | −0.16362 (19) | 0.71966 (16) | 0.0503 (5) | |
| H15 | 0.2520 | −0.1684 | 0.6618 | 0.060* | |
| C16 | 0.3704 (2) | −0.2778 (2) | 0.75669 (18) | 0.0558 (5) | |
| H16 | 0.3266 | −0.3584 | 0.7235 | 0.067* | |
| C17 | 0.4790 (2) | −0.2743 (2) | 0.84175 (17) | 0.0530 (5) | |
| C18 | 0.5257 (3) | −0.4007 (3) | 0.8817 (2) | 0.0871 (8) | |
| H18A | 0.6009 | −0.4355 | 0.8362 | 0.131* | |
| H18B | 0.4381 | −0.4632 | 0.8783 | 0.131* | |
| H18C | 0.5675 | −0.3833 | 0.9559 | 0.131* | |
| C19 | 0.5433 (2) | −0.1537 (2) | 0.88808 (17) | 0.0548 (5) | |
| H19 | 0.6181 | −0.1493 | 0.9448 | 0.066* | |
| C20 | 0.4988 (2) | −0.0388 (2) | 0.85185 (16) | 0.0485 (5) | |
| H20 | 0.5442 | 0.0417 | 0.8842 | 0.058* | |
| O4 | −0.06364 (17) | 0.16079 (19) | 0.51009 (14) | 0.0800 (5) | |
| N4 | 0.09249 (19) | 0.25425 (17) | 0.39330 (15) | 0.0582 (5) | |
| C21 | 0.0462 (2) | 0.1599 (3) | 0.45278 (19) | 0.0658 (6) | |
| H21 | 0.1016 | 0.0868 | 0.4510 | 0.079* | |
| C22 | 0.0147 (3) | 0.3718 (2) | 0.3888 (3) | 0.0941 (10) | |
| H22A | −0.0687 | 0.3694 | 0.4357 | 0.141* | |
| H22B | −0.0234 | 0.3772 | 0.3151 | 0.141* | |
| H22C | 0.0845 | 0.4472 | 0.4128 | 0.141* | |
| C23 | 0.2201 (3) | 0.2428 (3) | 0.3249 (2) | 0.0797 (8) | |
| H23A | 0.2674 | 0.1643 | 0.3368 | 0.120* | |
| H23B | 0.2928 | 0.3176 | 0.3431 | 0.120* | |
| H23C | 0.1846 | 0.2390 | 0.2495 | 0.120* |
| O1 | 0.0489 (8) | 0.0557 (9) | 0.0800 (10) | 0.0090 (6) | 0.0278 (7) | 0.0317 (7) |
| O2 | 0.0714 (10) | 0.0658 (10) | 0.0973 (12) | 0.0368 (8) | 0.0439 (9) | 0.0436 (9) |
| O3 | 0.1149 (15) | 0.0955 (14) | 0.1588 (19) | 0.0597 (12) | 0.0936 (14) | 0.0921 (14) |
| N1 | 0.0396 (8) | 0.0558 (10) | 0.0574 (10) | 0.0151 (7) | 0.0189 (7) | 0.0236 (8) |
| N2 | 0.0446 (9) | 0.0477 (9) | 0.0676 (11) | 0.0153 (7) | 0.0225 (8) | 0.0298 (8) |
| N3 | 0.0434 (8) | 0.0466 (9) | 0.0597 (10) | 0.0131 (7) | 0.0181 (7) | 0.0249 (8) |
| C1 | 0.0395 (10) | 0.0480 (11) | 0.0535 (11) | 0.0077 (8) | 0.0124 (9) | 0.0168 (9) |
| C2 | 0.0473 (11) | 0.0521 (12) | 0.0497 (11) | 0.0165 (9) | 0.0143 (9) | 0.0232 (9) |
| C3 | 0.0396 (10) | 0.0441 (10) | 0.0441 (10) | 0.0110 (8) | 0.0097 (8) | 0.0163 (8) |
| C4 | 0.0429 (10) | 0.0408 (10) | 0.0412 (10) | 0.0100 (8) | 0.0087 (8) | 0.0132 (8) |
| C5 | 0.0440 (10) | 0.0443 (11) | 0.0478 (11) | 0.0098 (8) | 0.0142 (8) | 0.0162 (8) |
| C6 | 0.0633 (13) | 0.0447 (11) | 0.0665 (13) | 0.0131 (10) | 0.0296 (11) | 0.0229 (10) |
| C7 | 0.0485 (11) | 0.0497 (12) | 0.0646 (13) | 0.0020 (9) | 0.0198 (10) | 0.0141 (10) |
| C8 | 0.0420 (10) | 0.0464 (11) | 0.0575 (12) | 0.0090 (8) | 0.0173 (9) | 0.0138 (9) |
| C9 | 0.0749 (15) | 0.0634 (15) | 0.0693 (15) | 0.0109 (12) | 0.0075 (12) | 0.0036 (12) |
| C10 | 0.0516 (12) | 0.0669 (15) | 0.0824 (16) | 0.0141 (11) | 0.0280 (11) | 0.0164 (12) |
| C11 | 0.0459 (11) | 0.0571 (13) | 0.0687 (13) | 0.0190 (9) | 0.0227 (10) | 0.0263 (10) |
| C12 | 0.0432 (10) | 0.0462 (11) | 0.0533 (11) | 0.0113 (8) | 0.0145 (9) | 0.0194 (9) |
| C13 | 0.0376 (9) | 0.0447 (11) | 0.0484 (11) | 0.0088 (8) | 0.0120 (8) | 0.0190 (8) |
| C14 | 0.0409 (9) | 0.0410 (10) | 0.0422 (10) | 0.0103 (8) | 0.0136 (8) | 0.0163 (8) |
| C15 | 0.0527 (11) | 0.0477 (12) | 0.0514 (12) | 0.0066 (9) | −0.0011 (9) | 0.0113 (9) |
| C16 | 0.0631 (13) | 0.0389 (11) | 0.0670 (14) | 0.0073 (9) | 0.0069 (11) | 0.0095 (10) |
| C17 | 0.0564 (12) | 0.0500 (13) | 0.0601 (13) | 0.0194 (10) | 0.0158 (10) | 0.0236 (10) |
| C18 | 0.0965 (19) | 0.0673 (17) | 0.109 (2) | 0.0288 (14) | 0.0107 (16) | 0.0448 (15) |
| C19 | 0.0550 (12) | 0.0627 (14) | 0.0508 (12) | 0.0155 (10) | −0.0006 (10) | 0.0198 (10) |
| C20 | 0.0520 (11) | 0.0463 (11) | 0.0483 (11) | 0.0042 (9) | 0.0019 (9) | 0.0116 (9) |
| O4 | 0.0493 (9) | 0.1184 (15) | 0.0802 (11) | 0.0195 (9) | 0.0241 (8) | 0.0278 (10) |
| N4 | 0.0482 (10) | 0.0595 (11) | 0.0705 (12) | 0.0154 (8) | 0.0172 (9) | 0.0086 (9) |
| C21 | 0.0501 (12) | 0.0872 (18) | 0.0675 (15) | 0.0244 (12) | 0.0143 (11) | 0.0229 (13) |
| C22 | 0.0639 (15) | 0.0549 (15) | 0.166 (3) | 0.0120 (12) | 0.0356 (17) | 0.0052 (16) |
| C23 | 0.0733 (16) | 0.0849 (18) | 0.0918 (19) | 0.0286 (14) | 0.0400 (14) | 0.0257 (15) |
| O1—C1 | 1.226 (2) | C10—H10C | 0.9600 |
| O2—C2 | 1.211 (2) | C11—C12 | 1.506 (2) |
| O3—C6 | 1.205 (2) | C11—H11A | 0.9700 |
| N1—C1 | 1.367 (2) | C11—H11B | 0.9700 |
| N1—C2 | 1.388 (2) | C14—C15 | 1.378 (3) |
| N1—H1 | 0.8997 | C14—C20 | 1.382 (3) |
| N2—C1 | 1.360 (2) | C15—C16 | 1.383 (3) |
| N2—C13 | 1.382 (2) | C15—H15 | 0.9300 |
| N2—H2 | 0.8952 | C16—C17 | 1.377 (3) |
| N3—C13 | 1.337 (2) | C16—H16 | 0.9300 |
| N3—C12 | 1.338 (2) | C17—C19 | 1.375 (3) |
| C2—C3 | 1.478 (2) | C17—C18 | 1.516 (3) |
| C3—C13 | 1.398 (2) | C18—H18A | 0.9600 |
| C3—C4 | 1.405 (2) | C18—H18B | 0.9600 |
| C4—C5 | 1.409 (2) | C18—H18C | 0.9600 |
| C4—C14 | 1.497 (2) | C19—C20 | 1.384 (3) |
| C5—C12 | 1.411 (2) | C19—H19 | 0.9300 |
| C5—C6 | 1.503 (2) | C20—H20 | 0.9300 |
| C6—C7 | 1.495 (3) | O4—C21 | 1.230 (2) |
| C7—C8 | 1.533 (3) | N4—C21 | 1.326 (3) |
| C7—H7A | 0.9700 | N4—C22 | 1.444 (3) |
| C7—H7B | 0.9700 | N4—C23 | 1.447 (3) |
| C8—C9 | 1.523 (3) | C21—H21 | 0.9300 |
| C8—C11 | 1.526 (3) | C22—H22A | 0.9600 |
| C8—C10 | 1.528 (3) | C22—H22B | 0.9600 |
| C9—H9A | 0.9600 | C22—H22C | 0.9600 |
| C9—H9B | 0.9600 | C23—H23A | 0.9600 |
| C9—H9C | 0.9600 | C23—H23B | 0.9600 |
| C10—H10A | 0.9600 | C23—H23C | 0.9600 |
| C10—H10B | 0.9600 | ||
| C1—N1—C2 | 127.04 (15) | C12—C11—H11B | 108.5 |
| C1—N1—H1 | 114.5 | C8—C11—H11B | 108.5 |
| C2—N1—H1 | 118.3 | H11A—C11—H11B | 107.5 |
| C1—N2—C13 | 123.74 (15) | N3—C12—C5 | 123.18 (16) |
| C1—N2—H2 | 118.6 | N3—C12—C11 | 114.43 (16) |
| C13—N2—H2 | 117.6 | C5—C12—C11 | 122.38 (16) |
| C13—N3—C12 | 116.77 (15) | N3—C13—N2 | 114.21 (15) |
| O1—C1—N2 | 122.24 (17) | N3—C13—C3 | 125.32 (15) |
| O1—C1—N1 | 122.30 (16) | N2—C13—C3 | 120.46 (15) |
| N2—C1—N1 | 115.46 (16) | C15—C14—C20 | 118.52 (17) |
| O2—C2—N1 | 119.28 (17) | C15—C14—C4 | 121.53 (17) |
| O2—C2—C3 | 125.96 (17) | C20—C14—C4 | 119.91 (17) |
| N1—C2—C3 | 114.75 (16) | C14—C15—C16 | 120.51 (19) |
| C13—C3—C4 | 117.92 (15) | C14—C15—H15 | 119.7 |
| C13—C3—C2 | 117.88 (15) | C16—C15—H15 | 119.7 |
| C4—C3—C2 | 124.20 (16) | C17—C16—C15 | 121.3 (2) |
| C3—C4—C5 | 117.59 (16) | C17—C16—H16 | 119.4 |
| C3—C4—C14 | 121.21 (15) | C15—C16—H16 | 119.4 |
| C5—C4—C14 | 121.17 (15) | C19—C17—C16 | 117.98 (18) |
| C4—C5—C12 | 119.14 (16) | C19—C17—C18 | 121.7 (2) |
| C4—C5—C6 | 123.10 (16) | C16—C17—C18 | 120.4 (2) |
| C12—C5—C6 | 117.74 (16) | C17—C18—H18A | 109.5 |
| O3—C6—C7 | 121.12 (18) | C17—C18—H18B | 109.5 |
| O3—C6—C5 | 121.92 (19) | H18A—C18—H18B | 109.5 |
| C7—C6—C5 | 116.92 (17) | C17—C18—H18C | 109.5 |
| C6—C7—C8 | 111.96 (16) | H18A—C18—H18C | 109.5 |
| C6—C7—H7A | 109.2 | H18B—C18—H18C | 109.5 |
| C8—C7—H7A | 109.2 | C17—C19—C20 | 121.29 (19) |
| C6—C7—H7B | 109.2 | C17—C19—H19 | 119.4 |
| C8—C7—H7B | 109.2 | C20—C19—H19 | 119.4 |
| H7A—C7—H7B | 107.9 | C14—C20—C19 | 120.40 (19) |
| C9—C8—C11 | 111.19 (18) | C14—C20—H20 | 119.8 |
| C9—C8—C10 | 108.88 (18) | C19—C20—H20 | 119.8 |
| C11—C8—C10 | 109.94 (16) | C21—N4—C22 | 122.15 (19) |
| C9—C8—C7 | 109.80 (17) | C21—N4—C23 | 121.93 (19) |
| C11—C8—C7 | 106.70 (16) | C22—N4—C23 | 115.86 (19) |
| C10—C8—C7 | 110.32 (16) | O4—C21—N4 | 125.7 (2) |
| C8—C9—H9A | 109.5 | O4—C21—H21 | 117.2 |
| C8—C9—H9B | 109.5 | N4—C21—H21 | 117.2 |
| H9A—C9—H9B | 109.5 | N4—C22—H22A | 109.5 |
| C8—C9—H9C | 109.5 | N4—C22—H22B | 109.5 |
| H9A—C9—H9C | 109.5 | H22A—C22—H22B | 109.5 |
| H9B—C9—H9C | 109.5 | N4—C22—H22C | 109.5 |
| C8—C10—H10A | 109.5 | H22A—C22—H22C | 109.5 |
| C8—C10—H10B | 109.5 | H22B—C22—H22C | 109.5 |
| H10A—C10—H10B | 109.5 | N4—C23—H23A | 109.5 |
| C8—C10—H10C | 109.5 | N4—C23—H23B | 109.5 |
| H10A—C10—H10C | 109.5 | H23A—C23—H23B | 109.5 |
| H10B—C10—H10C | 109.5 | N4—C23—H23C | 109.5 |
| C12—C11—C8 | 114.94 (16) | H23A—C23—H23C | 109.5 |
| C12—C11—H11A | 108.5 | H23B—C23—H23C | 109.5 |
| C8—C11—H11A | 108.5 | ||
| C13—N2—C1—O1 | −176.75 (19) | C13—N3—C12—C11 | −178.87 (17) |
| C13—N2—C1—N1 | 3.2 (3) | C4—C5—C12—N3 | 0.0 (3) |
| C2—N1—C1—O1 | −176.3 (2) | C6—C5—C12—N3 | 178.69 (19) |
| C2—N1—C1—N2 | 3.8 (3) | C4—C5—C12—C11 | −179.04 (18) |
| C1—N1—C2—O2 | 171.4 (2) | C6—C5—C12—C11 | −0.4 (3) |
| C1—N1—C2—C3 | −9.2 (3) | C8—C11—C12—N3 | −159.06 (18) |
| O2—C2—C3—C13 | −172.7 (2) | C8—C11—C12—C5 | 20.1 (3) |
| N1—C2—C3—C13 | 8.0 (3) | C12—N3—C13—N2 | 179.51 (17) |
| O2—C2—C3—C4 | 7.0 (3) | C12—N3—C13—C3 | −1.7 (3) |
| N1—C2—C3—C4 | −172.41 (18) | C1—N2—C13—N3 | 175.18 (18) |
| C13—C3—C4—C5 | 2.6 (3) | C1—N2—C13—C3 | −3.7 (3) |
| C2—C3—C4—C5 | −176.97 (18) | C4—C3—C13—N3 | −0.6 (3) |
| C13—C3—C4—C14 | −175.28 (17) | C2—C3—C13—N3 | 179.01 (18) |
| C2—C3—C4—C14 | 5.1 (3) | C4—C3—C13—N2 | 178.07 (17) |
| C3—C4—C5—C12 | −2.4 (3) | C2—C3—C13—N2 | −2.3 (3) |
| C14—C4—C5—C12 | 175.53 (18) | C3—C4—C14—C15 | −104.4 (2) |
| C3—C4—C5—C6 | 179.03 (18) | C5—C4—C14—C15 | 77.8 (2) |
| C14—C4—C5—C6 | −3.1 (3) | C3—C4—C14—C20 | 77.8 (2) |
| C4—C5—C6—O3 | 13.9 (4) | C5—C4—C14—C20 | −100.1 (2) |
| C12—C5—C6—O3 | −164.7 (2) | C20—C14—C15—C16 | 1.7 (3) |
| C4—C5—C6—C7 | −168.34 (19) | C4—C14—C15—C16 | −176.17 (17) |
| C12—C5—C6—C7 | 13.1 (3) | C14—C15—C16—C17 | −0.4 (3) |
| O3—C6—C7—C8 | 132.9 (3) | C15—C16—C17—C19 | −1.0 (3) |
| C5—C6—C7—C8 | −45.0 (3) | C15—C16—C17—C18 | 179.4 (2) |
| C6—C7—C8—C9 | −59.3 (2) | C16—C17—C19—C20 | 1.0 (3) |
| C6—C7—C8—C11 | 61.3 (2) | C18—C17—C19—C20 | −179.3 (2) |
| C6—C7—C8—C10 | −179.26 (18) | C15—C14—C20—C19 | −1.6 (3) |
| C9—C8—C11—C12 | 70.9 (2) | C4—C14—C20—C19 | 176.28 (17) |
| C10—C8—C11—C12 | −168.42 (18) | C17—C19—C20—C14 | 0.3 (3) |
| C7—C8—C11—C12 | −48.8 (2) | C22—N4—C21—O4 | −0.6 (4) |
| C13—N3—C12—C5 | 2.0 (3) | C23—N4—C21—O4 | −177.7 (2) |
| H··· | ||||
| N1—H1···O4i | 0.90 | 1.96 | 2.854 (2) | 170 |
| N2—H2···O1ii | 0.90 | 1.97 | 2.846 (2) | 167 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O4i | 0.90 | 1.96 | 2.854 (2) | 170 |
| N2—H2⋯O1ii | 0.90 | 1.97 | 2.846 (2) | 167 |
Symmetry codes: (i) ; (ii) .