Literature DB >> 21201939

(Z)-Methyl 2-methoxy-imino-3-oxo-butanoate.

Jin-Yong Lu, Wei-Zheng Shen, Hans Preut, Hans-Dieter Arndt.   

Abstract

The title compound, C(6)H(9)NO(4), was prepared stereoselectively as a precursor for 1-aza-dienes in a study of hetero-Diels-Alder reactions. The configuration of the C=N double bond was found to be Z, corroborating earlier assignments of similar compounds based only on NMR and IR spectroscopic analysis.

Entities:  

Year:  2008        PMID: 21201939      PMCID: PMC2960885          DOI: 10.1107/S1600536808004376

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Buehler (1967 ▶); Corrêa & Moran (1999 ▶); Fletcher et al. (2006 ▶); François et al. (2004 ▶); Jirman et al. (1990 ▶); Karabatsos & Taller (1968 ▶); Levy & Nelson (1972 ▶); Lu & Arndt (2007 ▶).

Experimental

Crystal data

C6H9NO4 M = 159.14 Orthorhombic, a = 8.3410 (17) Å b = 13.410 (3) Å c = 7.2900 (15) Å V = 815.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 291 (1) K 0.2 × 0.2 × 0.2 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: none 3104 measured reflections 899 independent reflections 536 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.057 S = 1.09 899 reflections 104 parameters 1 restraint H-atom parameters constrained Δρmax = 0.08 e Å−3 Δρmin = −0.11 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808004376/hb2698sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808004376/hb2698Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9NO4F000 = 336
Mr = 159.14Dx = 1.296 Mg m3
Orthorhombic, Pna21Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 3104 reflections
a = 8.3410 (17) Åθ = 3.0–27.5º
b = 13.410 (3) ŵ = 0.11 mm1
c = 7.2900 (15) ÅT = 291 (1) K
V = 815.4 (3) Å3Cube, colourless
Z = 40.2 × 0.2 × 0.2 mm
Nonius KappaCCD diffractometer899 independent reflections
Radiation source: fine-focus sealed tube536 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.045
Detector resolution: 19 vertical, 18 horizontal pixels mm-1θmax = 26.4º
T = 291(1) Kθmin = 3.9º
213 frames via ω–rotation (Δω = 1%) and two times 40 s per frame (four sets at different κ–angles) scansh = −10→10
Absorption correction: nonek = −16→16
3104 measured reflectionsl = −9→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H-atom parameters constrained
wR(F2) = 0.057  w = 1/[σ2(Fo2) + (0.0206P)2] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
899 reflectionsΔρmax = 0.08 e Å3
104 parametersΔρmin = −0.11 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.087 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.14686 (19)0.12432 (11)0.8457 (2)0.0633 (5)
O20.1931 (2)0.03995 (12)0.4285 (2)0.0784 (6)
O30.4017 (2)0.23981 (12)0.3446 (3)0.0923 (7)
O40.4114 (2)0.03491 (11)0.6049 (2)0.0634 (5)
N10.19750 (19)0.20788 (12)0.7495 (3)0.0536 (5)
C10.2847 (3)0.07762 (15)0.5349 (3)0.0520 (6)
C30.2673 (2)0.18321 (15)0.5998 (3)0.0463 (5)
C50.3291 (3)0.26405 (17)0.4804 (3)0.0557 (6)
C70.0702 (3)0.15466 (19)1.0136 (3)0.0749 (8)
H7A0.03490.09671.07960.112*
H7B−0.02050.19610.98570.112*
H7C0.14490.19141.08750.112*
C80.4383 (4)−0.06865 (16)0.5537 (3)0.0819 (9)
H8A0.5226−0.09600.62790.123*
H8D0.4683−0.07210.42680.123*
H8B0.3416−0.10610.57270.123*
C90.3008 (3)0.37018 (15)0.5307 (4)0.0674 (7)
H9A0.34810.41280.43970.101*
H9B0.34840.38360.64800.101*
H9D0.18750.38260.53670.101*
U11U22U33U12U13U23
O10.0881 (11)0.0498 (9)0.0519 (9)−0.0045 (8)0.0208 (9)0.0002 (9)
O20.0868 (13)0.0657 (11)0.0828 (13)0.0028 (9)−0.0205 (12)−0.0202 (11)
O30.1322 (17)0.0691 (12)0.0755 (13)−0.0101 (10)0.0492 (14)−0.0068 (11)
O40.0676 (10)0.0551 (9)0.0675 (10)0.0137 (8)−0.0078 (9)−0.0037 (9)
N10.0625 (12)0.0471 (11)0.0510 (12)−0.0028 (9)0.0046 (12)0.0004 (10)
C10.0601 (14)0.0494 (13)0.0467 (14)−0.0018 (13)0.0041 (14)−0.0023 (13)
C30.0483 (12)0.0491 (13)0.0415 (12)0.0010 (10)−0.0001 (12)−0.0037 (12)
C50.0615 (16)0.0567 (15)0.0490 (14)−0.0031 (12)0.0063 (13)−0.0008 (13)
C70.0981 (19)0.0731 (17)0.0535 (16)−0.0063 (16)0.0276 (15)−0.0040 (14)
C80.1075 (19)0.0597 (17)0.079 (2)0.0278 (14)0.0040 (16)0.0008 (15)
C90.0773 (15)0.0517 (14)0.0732 (17)−0.0057 (13)0.0087 (13)0.0009 (15)
O1—N11.387 (2)C7—H7A0.9600
O1—C71.440 (3)C7—H7B0.9600
O2—C11.200 (3)C7—H7C0.9600
O3—C51.205 (3)C8—H8A0.9600
O4—C11.306 (3)C8—H8D0.9600
O4—C81.455 (2)C8—H8B0.9600
N1—C31.281 (3)C9—H9A0.9600
C1—C31.500 (3)C9—H9B0.9600
C3—C51.483 (3)C9—H9D0.9600
C5—C91.489 (3)
N1—O1—C7109.67 (16)O1—C7—H7C109.5
C1—O4—C8116.29 (19)H7A—C7—H7C109.5
C3—N1—O1111.12 (17)H7B—C7—H7C109.5
O2—C1—O4125.7 (2)O4—C8—H8A109.5
O2—C1—C3122.6 (2)O4—C8—H8D109.5
O4—C1—C3111.7 (2)H8A—C8—H8D109.5
N1—C3—C5118.01 (19)O4—C8—H8B109.5
N1—C3—C1123.8 (2)H8A—C8—H8B109.5
C5—C3—C1118.1 (2)H8D—C8—H8B109.5
O3—C5—C3117.4 (2)C5—C9—H9A109.5
O3—C5—C9122.7 (2)C5—C9—H9B109.5
C3—C5—C9119.9 (2)H9A—C9—H9B109.5
O1—C7—H7A109.5C5—C9—H9D109.5
O1—C7—H7B109.5H9A—C9—H9D109.5
H7A—C7—H7B109.5H9B—C9—H9D109.5
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