Literature DB >> 21201925

7-Chloro-11a-phenyl-2,3,5,10,11,11a-hexa-hydro-1H-pyrrolo[2,1-c][1,4]benzodiazepine-5,11-dione.

Rafael Tamazyan, Armen Ayvazyan, Ashot Martirosyan, Gohar Harutyunyan, Vahan Martirosyan.   

Abstract

The title compound, C(18)H(15)ClN(2)O(2), is a potential human immunodeficiency virus type-1 (HIV-1) non-nucleoside reverse transcriptase inhibitor. The pyrrolidine ring adopts an envelope and the diazepine ring a boat conformation. In the crystal structure, two isomers (R and S) form centrosymmetric dimers via N-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21201925      PMCID: PMC2960833          DOI: 10.1107/S160053680800408X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the pharmacological properties of this family of compounds, see: De Clercq (1996 ▶). For the crystal structures of some analogues of the title compound, see: Karapetyan et al. (2002 ▶); Tamazyan et al. (2002 ▶, 2007 ▶). For reference structural data, see Allen et al. (1987 ▶).

Experimental

Crystal data

C18H15ClN2O2 M = 326.77 Triclinic, a = 8.9749 (18) Å b = 9.2184 (18) Å c = 9.912 (2) Å α = 86.90 (3)° β = 71.35 (3)° γ = 88.27 (3)° V = 775.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.26 mm−1 T = 293 (2) K 0.35 × 0.32 × 0.28 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 7347 measured reflections 4514 independent reflections 3148 reflections with I > 2σ(I) R int = 0.035 3 standard reflections frequency: 180 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.121 S = 1.02 4514 reflections 268 parameters All H-atom parameters refined Δρmax = 0.27 e Å−3 Δρmin = −0.31 e Å−3 Data collection: DATCOL in CAD-4 (Enraf–Nonius, 1988 ▶); cell refinement: LS in CAD-4; data reduction: HELENA (Spek, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680800408X/sj2462sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680800408X/sj2462Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H15ClN2O2Z = 2
Mr = 326.77F(000) = 340
Triclinic, P1Dx = 1.399 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.9749 (18) ÅCell parameters from 22 reflections
b = 9.2184 (18) Åθ = 12.6–16.6°
c = 9.912 (2) ŵ = 0.26 mm1
α = 86.90 (3)°T = 293 K
β = 71.35 (3)°Prism, colourless
γ = 88.27 (3)°0.35 × 0.32 × 0.28 mm
V = 775.8 (3) Å3
Enraf–Nonius CAD-4 diffractometerRint = 0.035
Radiation source: fine-focus sealed tubeθmax = 30.0°, θmin = 2.2°
graphiteh = −12→12
θ/2θ scansk = −12→12
7347 measured reflectionsl = −13→13
4514 independent reflections3 standard reflections every 180 min
3148 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: difference Fourier map
wR(F2) = 0.121All H-atom parameters refined
S = 1.02w = 1/[σ2(Fo2) + (0.0496P)2 + 0.2193P] where P = (Fo2 + 2Fc2)/3
4514 reflections(Δ/σ)max < 0.001
268 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.70626 (17)0.27403 (17)1.00932 (16)0.0333 (3)
C30.66409 (19)0.11255 (18)1.04089 (17)0.0389 (3)
C50.91077 (18)0.04305 (16)0.85230 (16)0.0343 (3)
C60.9468 (2)−0.05252 (19)0.74145 (19)0.0432 (4)
C71.0802 (2)−0.0350 (2)0.6255 (2)0.0488 (4)
C81.1788 (2)0.0798 (2)0.61835 (19)0.0470 (4)
C91.1492 (2)0.1717 (2)0.72885 (19)0.0418 (4)
C101.01455 (17)0.15430 (16)0.84775 (16)0.0332 (3)
C110.99809 (17)0.25083 (15)0.96767 (16)0.0319 (3)
C140.8259 (2)0.37447 (19)1.17444 (18)0.0391 (3)
C150.6494 (2)0.3646 (2)1.24567 (19)0.0493 (4)
C160.5879 (2)0.3677 (2)1.11921 (19)0.0448 (4)
C170.71935 (17)0.32632 (16)0.85722 (16)0.0335 (3)
C180.8016 (2)0.45256 (19)0.79868 (18)0.0405 (4)
C190.8104 (2)0.5045 (2)0.6632 (2)0.0519 (4)
C200.7365 (3)0.4332 (2)0.5842 (2)0.0571 (5)
C210.6523 (3)0.3101 (2)0.6421 (2)0.0562 (5)
C220.6436 (2)0.2556 (2)0.7781 (2)0.0439 (4)
Cl1.33908 (7)0.10803 (8)0.46554 (6)0.0735 (2)
H40.745 (2)−0.072 (2)0.987 (2)0.052 (6)*
H60.874 (2)−0.135 (2)0.747 (2)0.047 (5)*
H71.101 (3)−0.097 (2)0.551 (2)0.062 (6)*
H91.219 (2)0.246 (2)0.725 (2)0.049 (5)*
H180.851 (2)0.504 (2)0.853 (2)0.048 (5)*
H190.864 (3)0.590 (3)0.625 (2)0.065 (7)*
H200.745 (3)0.481 (2)0.482 (3)0.064 (6)*
H210.599 (3)0.259 (2)0.595 (2)0.058 (6)*
H220.584 (2)0.174 (2)0.816 (2)0.051 (6)*
H14A0.856 (2)0.473 (2)1.1500 (19)0.040 (5)*
H15A0.608 (3)0.445 (3)1.311 (2)0.065 (6)*
H16A0.596 (2)0.467 (2)1.080 (2)0.052 (6)*
H14B0.886 (2)0.328 (2)1.233 (2)0.048 (5)*
H15B0.623 (2)0.270 (2)1.301 (2)0.054 (6)*
H16B0.484 (3)0.331 (2)1.139 (2)0.055 (6)*
N10.85316 (15)0.29356 (14)1.04452 (13)0.0327 (3)
N40.77286 (16)0.01605 (16)0.96731 (15)0.0390 (3)
O121.11592 (13)0.28878 (12)0.99545 (13)0.0410 (3)
O130.54222 (16)0.07208 (16)1.12946 (15)0.0604 (4)
U11U22U33U12U13U23
C20.0302 (7)0.0378 (8)0.0323 (7)−0.0007 (6)−0.0102 (5)−0.0035 (6)
C30.0373 (8)0.0440 (9)0.0352 (8)−0.0102 (6)−0.0106 (6)−0.0001 (6)
C50.0389 (8)0.0298 (7)0.0351 (7)0.0016 (6)−0.0134 (6)0.0008 (6)
C60.0543 (10)0.0354 (8)0.0433 (9)0.0004 (7)−0.0199 (8)−0.0040 (7)
C70.0610 (11)0.0468 (10)0.0399 (9)0.0125 (8)−0.0178 (8)−0.0093 (8)
C80.0423 (9)0.0553 (11)0.0373 (8)0.0095 (8)−0.0055 (7)0.0000 (8)
C90.0352 (8)0.0438 (9)0.0437 (9)0.0006 (7)−0.0092 (7)0.0006 (7)
C100.0324 (7)0.0316 (7)0.0359 (7)0.0017 (5)−0.0118 (6)−0.0001 (6)
C110.0342 (7)0.0263 (7)0.0361 (7)−0.0030 (5)−0.0131 (6)0.0040 (5)
C140.0480 (9)0.0360 (8)0.0367 (8)0.0009 (7)−0.0174 (7)−0.0070 (7)
C150.0494 (10)0.0602 (12)0.0365 (9)0.0050 (9)−0.0102 (7)−0.0112 (8)
C160.0394 (9)0.0540 (11)0.0407 (9)0.0087 (8)−0.0115 (7)−0.0118 (8)
C170.0310 (7)0.0363 (8)0.0343 (7)0.0047 (6)−0.0119 (6)−0.0050 (6)
C180.0417 (9)0.0405 (9)0.0418 (9)−0.0001 (7)−0.0168 (7)−0.0032 (7)
C190.0563 (11)0.0507 (11)0.0463 (10)−0.0007 (9)−0.0147 (8)0.0080 (8)
C200.0711 (13)0.0641 (13)0.0382 (9)0.0087 (10)−0.0213 (9)−0.0014 (9)
C210.0687 (13)0.0618 (12)0.0508 (11)0.0060 (10)−0.0354 (10)−0.0148 (9)
C220.0462 (9)0.0440 (9)0.0467 (9)−0.0005 (7)−0.0215 (8)−0.0068 (8)
Cl0.0554 (3)0.0986 (5)0.0498 (3)0.0051 (3)0.0065 (2)−0.0053 (3)
N10.0349 (6)0.0337 (6)0.0318 (6)−0.0002 (5)−0.0134 (5)−0.0037 (5)
N40.0418 (7)0.0314 (7)0.0417 (7)−0.0078 (5)−0.0106 (6)0.0026 (6)
O120.0371 (6)0.0362 (6)0.0532 (7)−0.0047 (4)−0.0189 (5)−0.0019 (5)
O130.0519 (8)0.0631 (9)0.0522 (8)−0.0217 (7)0.0050 (6)−0.0049 (6)
C2—N11.4858 (19)C14—C151.517 (3)
C2—C171.527 (2)C14—H14A0.956 (19)
C2—C31.538 (2)C14—H14B0.99 (2)
C2—C161.539 (2)C15—C161.522 (3)
C3—O131.217 (2)C15—H15A0.99 (2)
C3—N41.356 (2)C15—H15B1.00 (2)
C5—C101.395 (2)C16—H16A0.97 (2)
C5—C61.396 (2)C16—H16B0.96 (2)
C5—N41.407 (2)C17—C221.387 (2)
C6—C71.375 (3)C17—C181.393 (2)
C6—H61.010 (19)C18—C191.380 (3)
C7—C81.385 (3)C18—H180.95 (2)
C7—H70.93 (2)C19—C201.378 (3)
C8—C91.374 (3)C19—H190.94 (2)
C8—Cl1.7370 (19)C20—C211.376 (3)
C9—C101.398 (2)C20—H201.06 (2)
C9—H90.93 (2)C21—C221.392 (3)
C10—C111.490 (2)C21—H210.92 (2)
C11—O121.2391 (18)C22—H220.92 (2)
C11—N11.340 (2)N4—H40.85 (2)
C14—N11.472 (2)
N1—C2—C17113.17 (12)C14—C15—C16102.64 (15)
N1—C2—C3106.65 (12)C14—C15—H15A111.5 (13)
C17—C2—C3113.09 (13)C16—C15—H15A113.8 (13)
N1—C2—C16101.84 (12)C14—C15—H15B110.0 (12)
C17—C2—C16111.26 (13)C16—C15—H15B109.7 (12)
C3—C2—C16110.18 (14)H15A—C15—H15B109.1 (18)
O13—C3—N4121.24 (16)C15—C16—C2104.63 (14)
O13—C3—C2122.47 (16)C15—C16—H16A107.3 (12)
N4—C3—C2116.26 (13)C2—C16—H16A107.6 (12)
C10—C5—C6119.46 (15)C15—C16—H16B115.7 (13)
C10—C5—N4123.50 (14)C2—C16—H16B109.7 (13)
C6—C5—N4116.96 (15)H16A—C16—H16B111.4 (18)
C7—C6—C5120.84 (17)C22—C17—C18118.84 (15)
C7—C6—H6119.9 (11)C22—C17—C2121.50 (15)
C5—C6—H6119.3 (11)C18—C17—C2119.56 (14)
C6—C7—C8119.40 (17)C19—C18—C17120.52 (17)
C6—C7—H7120.2 (14)C19—C18—H18119.7 (12)
C8—C7—H7120.4 (14)C17—C18—H18119.8 (12)
C9—C8—C7120.77 (17)C20—C19—C18120.54 (19)
C9—C8—Cl120.40 (15)C20—C19—H19119.1 (14)
C7—C8—Cl118.82 (15)C18—C19—H19120.3 (14)
C8—C9—C10120.23 (17)C21—C20—C19119.41 (18)
C8—C9—H9120.2 (12)C21—C20—H20124.0 (12)
C10—C9—H9119.6 (12)C19—C20—H20116.5 (12)
C5—C10—C9119.18 (15)C20—C21—C22120.71 (19)
C5—C10—C11123.97 (14)C20—C21—H21123.0 (13)
C9—C10—C11116.69 (14)C22—C21—H21116.3 (14)
O12—C11—N1121.43 (14)C17—C22—C21119.96 (18)
O12—C11—C10120.38 (14)C17—C22—H22120.9 (13)
N1—C11—C10118.18 (13)C21—C22—H22119.1 (13)
N1—C14—C15103.15 (14)C11—N1—C14121.27 (13)
N1—C14—H14A110.2 (11)C11—N1—C2126.30 (12)
C15—C14—H14A110.6 (11)C14—N1—C2112.36 (12)
N1—C14—H14B109.6 (11)C3—N4—C5128.71 (14)
C15—C14—H14B112.6 (11)C3—N4—H4113.7 (14)
H14A—C14—H14B110.4 (15)C5—N4—H4116.9 (14)
N1—C2—C3—O13118.43 (17)C3—C2—C17—C2223.3 (2)
C17—C2—C3—O13−116.54 (18)C16—C2—C17—C22−101.29 (18)
C16—C2—C3—O138.7 (2)N1—C2—C17—C18−38.96 (19)
N1—C2—C3—N4−59.63 (17)C3—C2—C17—C18−160.38 (14)
C17—C2—C3—N465.40 (18)C16—C2—C17—C1875.00 (18)
C16—C2—C3—N4−169.39 (14)C22—C17—C18—C19−1.4 (2)
C10—C5—C6—C7−2.5 (2)C2—C17—C18—C19−177.78 (16)
N4—C5—C6—C7−179.40 (15)C17—C18—C19—C200.7 (3)
C5—C6—C7—C8−0.6 (3)C18—C19—C20—C210.6 (3)
C6—C7—C8—C93.3 (3)C19—C20—C21—C22−1.2 (3)
C6—C7—C8—Cl−175.46 (14)C18—C17—C22—C210.8 (3)
C7—C8—C9—C10−2.9 (3)C2—C17—C22—C21177.10 (16)
Cl—C8—C9—C10175.88 (13)C20—C21—C22—C170.5 (3)
C6—C5—C10—C92.9 (2)O12—C11—N1—C14−6.6 (2)
N4—C5—C10—C9179.60 (14)C10—C11—N1—C14172.75 (13)
C6—C5—C10—C11−172.22 (14)O12—C11—N1—C2170.27 (13)
N4—C5—C10—C114.5 (2)C10—C11—N1—C2−10.4 (2)
C8—C9—C10—C5−0.3 (2)C15—C14—N1—C11−165.56 (14)
C8—C9—C10—C11175.20 (15)C15—C14—N1—C217.18 (18)
C5—C10—C11—O12141.38 (15)C17—C2—N1—C11−50.6 (2)
C9—C10—C11—O12−33.9 (2)C3—C2—N1—C1174.38 (18)
C5—C10—C11—N1−38.0 (2)C16—C2—N1—C11−170.11 (15)
C9—C10—C11—N1146.80 (14)C17—C2—N1—C14126.50 (14)
N1—C14—C15—C16−34.22 (19)C3—C2—N1—C14−108.52 (14)
C14—C15—C16—C239.5 (2)C16—C2—N1—C146.98 (17)
N1—C2—C16—C15−28.50 (18)O13—C3—N4—C5172.76 (16)
C17—C2—C16—C15−149.37 (15)C2—C3—N4—C5−9.1 (2)
C3—C2—C16—C1584.38 (18)C10—C5—N4—C343.9 (2)
N1—C2—C17—C22144.75 (15)C6—C5—N4—C3−139.36 (17)
D—H···AD—HH···AD···AD—H···A
N4—H4···O12i0.85 (2)2.35 (2)2.997 (2)133 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯O12i0.85 (2)2.35 (2)2.997 (2)133 (2)

Symmetry code: (i) .

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Authors: 
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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  1-Substituted derivatives of 2-phenylpyrrolidine-2-carboxamide.

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Journal:  Acta Crystallogr C       Date:  2002-06-12       Impact factor: 1.172

4.  1-Substituted derivatives of 2-aryl-5-oxopyrrolidine-2-carboxylic acid.

Authors:  Harutyun Karapetyan; Rafael Tamazyan; Ashot Martirosyan; Vahagn Hovhannesyan; Sahak Gasparyan
Journal:  Acta Crystallogr C       Date:  2002-06-20       Impact factor: 1.172

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