Literature DB >> 21201919

1-(4-Bromo-benzo-yl)-2-phenyl-pyrrolidine-2-carboxamide.

Rafael Tamazyan, Armen Ayvazyan, Ashot Martirosyan, Gohar Harutunyan, Vahan Martirosyan.   

Abstract

In the title compound, C(18)H(17)BrN(2)O(2), which is a potential -human immunodeficiency virus type 1 (HIV-1) non-nucleoside reverse transcriptase inhibitor, the pyrrolidine ring exhibits an envelope conformation. In the crystal structure, inter-molecular N-H⋯O hydrogen bonds [N⋯O = 2.861 (3) Å] link the mol-ecules into centrosymmetric dimers.

Entities:  

Year:  2008        PMID: 21201919      PMCID: PMC2960799          DOI: 10.1107/S1600536808003954

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related crystal structures, see: Karapetyan et al. (2002 ▶); Tamazyan et al. (2002 ▶, 2007 ▶). For details of the synthesis, see: Martirosyan et al. (2000 ▶, 2004 ▶). For potential pharmacological applications, see: De Clercq (1996 ▶).

Experimental

Crystal data

C18H17BrN2O2 M = 373.25 Monoclinic, a = 9.5707 (19) Å b = 13.738 (3) Å c = 13.302 (3) Å β = 96.99 (2)° V = 1736.0 (6) Å3 Z = 4 Mo Kα radiation μ = 2.38 mm−1 T = 260 (2) K 0.14 mm (radius)

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: for a sphere (SHELXTL; Sheldrick, 2008 ▶) T min = 0.612, T max = 0.617 8356 measured reflections 4180 independent reflections 2941 reflections with I > 2σ(I) R int = 0.050 3 standard reflections frequency: 180 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.118 S = 1.02 4180 reflections 216 parameters 10 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.87 e Å−3 Δρmin = −0.89 e Å−3 Data collection: DATACOL in CAD-4 (Enraf–Nonius, 1988 ▶); cell refinement: LS in CAD-4; data reduction: HELENA (Spek, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808003954/cv2386sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808003954/cv2386Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H17BrN2O2F000 = 760
Mr = 373.25Dx = 1.428 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 9.5707 (19) Åθ = 13–16º
b = 13.738 (3) ŵ = 2.38 mm1
c = 13.302 (3) ÅT = 260 (2) K
β = 96.99 (2)ºSpherical, colourless
V = 1736.0 (6) Å30.28 × 0.28 × 0.28 × 0.14 (radius) mm
Z = 4
Enraf–Nonius CAD-4 diffractometerRint = 0.050
Radiation source: fine-focus sealed tubeθmax = 28.0º
Monochromator: graphiteθmin = 2.1º
T = 260(2) Kh = −12→12
θ/2θ scansk = 0→18
Absorption correction: for a sphere(SHELXTL; Sheldrick, 2008)l = −17→17
Tmin = 0.612, Tmax = 0.6173 standard reflections
8356 measured reflections every 180 min
4180 independent reflections intensity decay: none
2941 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.119  w = 1/[σ2(Fo2) + (0.0458P)2 + 1.2016P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
4180 reflectionsΔρmax = 0.87 e Å3
216 parametersΔρmin = −0.89 e Å3
10 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.68968 (4)1.01480 (3)0.85408 (3)0.07187 (17)
C1−0.0555 (2)0.71666 (16)0.64026 (16)0.0217 (4)
N20.08435 (19)0.75423 (14)0.68588 (13)0.0230 (4)
C30.1138 (3)0.7265 (2)0.79443 (18)0.0372 (6)
H3A0.11120.78310.83790.045*
H3B0.20510.69550.80840.045*
C4−0.0033 (3)0.65609 (19)0.80987 (18)0.0330 (5)
H4A−0.02570.65810.87900.040*
H4B0.02150.59000.79350.040*
C5−0.1249 (3)0.69388 (18)0.73599 (17)0.0277 (5)
H5A−0.16560.75200.76200.033*
H5B−0.19770.64490.72240.033*
C6−0.0375 (2)0.62094 (16)0.58089 (16)0.0225 (5)
N70.0475 (3)0.62518 (17)0.50977 (16)0.0310 (5)
H7A0.060 (3)0.572 (2)0.477 (2)0.026 (7)*
H7B0.089 (3)0.677 (2)0.502 (2)0.038 (8)*
O8−0.1011 (2)0.54709 (12)0.60012 (14)0.0357 (4)
C9−0.1430 (2)0.78995 (16)0.57304 (17)0.0245 (5)
C10−0.1242 (3)0.88979 (18)0.5831 (2)0.0333 (5)
H10−0.05150.91390.62910.040*
C11−0.2120 (3)0.9539 (2)0.5257 (2)0.0448 (7)
H11−0.19751.02060.53280.054*
C12−0.3217 (3)0.9190 (2)0.4578 (2)0.0484 (8)
H12−0.38110.96210.41930.058*
C13−0.3422 (3)0.8208 (2)0.4475 (2)0.0454 (7)
H13−0.41600.79730.40210.055*
C14−0.2534 (3)0.75578 (19)0.50447 (19)0.0341 (6)
H14−0.26800.68910.49660.041*
C150.1780 (2)0.79997 (16)0.63414 (17)0.0244 (5)
O160.16487 (18)0.80521 (12)0.54045 (12)0.0298 (4)
C170.3019 (2)0.84793 (17)0.69371 (18)0.0264 (5)
C180.4350 (3)0.8311 (2)0.6659 (2)0.0356 (6)
H180.44630.78670.61480.043*
C190.5505 (3)0.8797 (2)0.7137 (2)0.0441 (7)
H190.63970.86790.69550.053*
C200.5317 (3)0.9461 (2)0.7890 (2)0.0412 (7)
C210.4003 (3)0.9652 (2)0.8166 (2)0.0410 (6)
H210.38921.01100.86660.049*
C220.2853 (3)0.91537 (19)0.7691 (2)0.0337 (6)
H220.19620.92710.78770.040*
U11U22U33U12U13U23
Br10.0470 (2)0.0818 (3)0.0793 (3)−0.02922 (18)−0.02262 (18)0.0072 (2)
C10.0249 (10)0.0220 (11)0.0184 (10)−0.0011 (8)0.0038 (8)−0.0017 (8)
N20.0263 (9)0.0274 (10)0.0154 (9)−0.0030 (8)0.0033 (7)−0.0008 (7)
C30.0455 (15)0.0498 (16)0.0152 (11)−0.0080 (12)−0.0002 (10)0.0018 (11)
C40.0441 (14)0.0370 (14)0.0188 (11)−0.0031 (11)0.0070 (10)0.0039 (10)
C50.0329 (12)0.0292 (12)0.0229 (11)0.0000 (10)0.0108 (9)−0.0012 (9)
C60.0273 (11)0.0230 (11)0.0170 (10)0.0020 (9)0.0014 (8)0.0005 (8)
N70.0464 (13)0.0213 (11)0.0280 (11)−0.0039 (10)0.0159 (9)−0.0048 (9)
O80.0492 (11)0.0245 (9)0.0365 (10)−0.0080 (8)0.0176 (8)−0.0047 (7)
C90.0266 (11)0.0263 (11)0.0216 (11)0.0033 (9)0.0070 (9)0.0019 (9)
C100.0359 (13)0.0281 (13)0.0367 (14)0.0033 (10)0.0076 (11)0.0004 (11)
C110.0519 (17)0.0289 (13)0.0556 (19)0.0102 (12)0.0146 (15)0.0123 (13)
C120.0484 (17)0.0498 (18)0.0472 (17)0.0196 (14)0.0065 (14)0.0200 (14)
C130.0398 (15)0.0563 (19)0.0375 (16)0.0111 (13)−0.0064 (12)0.0058 (13)
C140.0359 (13)0.0332 (13)0.0324 (13)0.0040 (11)0.0011 (11)−0.0017 (11)
C150.0282 (11)0.0221 (11)0.0237 (11)0.0022 (9)0.0063 (9)−0.0015 (9)
O160.0383 (9)0.0314 (9)0.0208 (8)−0.0058 (7)0.0078 (7)−0.0010 (7)
C170.0257 (11)0.0270 (11)0.0267 (11)0.0000 (9)0.0042 (9)0.0001 (10)
C180.0310 (13)0.0372 (14)0.0398 (15)0.0024 (11)0.0095 (11)−0.0016 (11)
C190.0244 (12)0.0528 (17)0.0552 (18)0.0022 (11)0.0060 (12)0.0068 (15)
C200.0299 (13)0.0445 (15)0.0453 (16)−0.0118 (11)−0.0107 (11)0.0070 (13)
C210.0430 (15)0.0394 (15)0.0392 (15)−0.0072 (12)−0.0001 (12)−0.0086 (12)
C220.0287 (12)0.0357 (13)0.0374 (14)−0.0013 (10)0.0064 (10)−0.0093 (11)
Br1—C201.899 (3)C10—C111.382 (4)
C1—N21.493 (3)C10—H100.9300
C1—C91.527 (3)C11—C121.385 (5)
C1—C51.538 (3)C11—H110.9300
C1—C61.554 (3)C12—C131.368 (5)
N2—C151.350 (3)C12—H120.9300
N2—C31.487 (3)C13—C141.392 (4)
C3—C41.513 (4)C13—H130.9300
C3—H3A0.9700C14—H140.9300
C3—H3B0.9700C15—O161.239 (3)
C4—C51.520 (3)C15—C171.496 (3)
C4—H4A0.9700C17—C181.388 (3)
C4—H4B0.9700C17—C221.389 (3)
C5—H5A0.9700C18—C191.378 (4)
C5—H5B0.9700C18—H180.9300
C6—O81.226 (3)C19—C201.383 (4)
C6—N71.321 (3)C19—H190.9300
N7—H7A0.86 (3)C20—C211.378 (4)
N7—H7B0.83 (3)C21—C221.383 (4)
C9—C101.388 (3)C21—H210.9300
C9—C141.391 (3)C22—H220.9300
N2—C1—C9114.23 (18)C11—C10—C9121.0 (3)
N2—C1—C5100.93 (17)C11—C10—H10119.5
C9—C1—C5110.99 (18)C9—C10—H10119.5
N2—C1—C6110.43 (17)C10—C11—C12120.1 (3)
C9—C1—C6110.32 (17)C10—C11—H11120.0
C5—C1—C6109.54 (18)C12—C11—H11120.0
C15—N2—C3123.7 (2)C13—C12—C11119.6 (3)
C15—N2—C1124.89 (18)C13—C12—H12120.2
C3—N2—C1111.14 (18)C11—C12—H12120.2
N2—C3—C4103.87 (19)C12—C13—C14120.6 (3)
N2—C3—H3A111.0C12—C13—H13119.7
C4—C3—H3A111.0C14—C13—H13119.7
N2—C3—H3B111.0C9—C14—C13120.3 (3)
C4—C3—H3B111.0C9—C14—H14119.8
H3A—C3—H3B109.0C13—C14—H14119.8
C3—C4—C5102.4 (2)O16—C15—N2123.2 (2)
C3—C4—H4A111.3O16—C15—C17118.9 (2)
C5—C4—H4A111.3N2—C15—C17117.9 (2)
C3—C4—H4B111.3C18—C17—C22119.5 (2)
C5—C4—H4B111.3C18—C17—C15118.6 (2)
H4A—C4—H4B109.2C22—C17—C15121.5 (2)
C4—C5—C1103.39 (19)C19—C18—C17120.5 (3)
C4—C5—H5A111.1C19—C18—H18119.8
C1—C5—H5A111.1C17—C18—H18119.8
C4—C5—H5B111.1C18—C19—C20119.1 (3)
C1—C5—H5B111.1C18—C19—H19120.5
H5A—C5—H5B109.1C20—C19—H19120.5
O8—C6—N7123.4 (2)C21—C20—C19121.5 (2)
O8—C6—C1120.3 (2)C21—C20—Br1119.0 (2)
N7—C6—C1116.3 (2)C19—C20—Br1119.5 (2)
C6—N7—H7A117.1 (18)C20—C21—C22119.0 (3)
C6—N7—H7B119 (2)C20—C21—H21120.5
H7A—N7—H7B124 (3)C22—C21—H21120.5
C10—C9—C14118.4 (2)C21—C22—C17120.4 (2)
C10—C9—C1122.7 (2)C21—C22—H22119.8
C14—C9—C1118.7 (2)C17—C22—H22119.8
C9—C1—N2—C15−49.1 (3)C1—C9—C10—C11−175.3 (2)
C5—C1—N2—C15−168.3 (2)C9—C10—C11—C120.7 (4)
C6—C1—N2—C1575.9 (3)C10—C11—C12—C13−0.2 (5)
C9—C1—N2—C3136.3 (2)C11—C12—C13—C14−0.3 (5)
C5—C1—N2—C317.2 (2)C10—C9—C14—C130.1 (4)
C6—C1—N2—C3−98.6 (2)C1—C9—C14—C13175.0 (2)
C15—N2—C3—C4−165.7 (2)C12—C13—C14—C90.3 (4)
C1—N2—C3—C49.0 (3)C3—N2—C15—O16164.8 (2)
N2—C3—C4—C5−31.7 (3)C1—N2—C15—O16−9.1 (3)
C3—C4—C5—C143.1 (2)C3—N2—C15—C17−16.3 (3)
N2—C1—C5—C4−36.6 (2)C1—N2—C15—C17169.74 (19)
C9—C1—C5—C4−158.09 (19)O16—C15—C17—C18−48.8 (3)
C6—C1—C5—C479.8 (2)N2—C15—C17—C18132.3 (2)
N2—C1—C6—O8125.4 (2)O16—C15—C17—C22125.0 (3)
C9—C1—C6—O8−107.4 (2)N2—C15—C17—C22−53.9 (3)
C5—C1—C6—O815.1 (3)C22—C17—C18—C191.0 (4)
N2—C1—C6—N7−55.3 (3)C15—C17—C18—C19174.9 (2)
C9—C1—C6—N771.9 (3)C17—C18—C19—C20−0.6 (4)
C5—C1—C6—N7−165.6 (2)C18—C19—C20—C21−0.5 (4)
N2—C1—C9—C10−23.9 (3)C18—C19—C20—Br1−179.2 (2)
C5—C1—C9—C1089.4 (3)C19—C20—C21—C221.2 (4)
C6—C1—C9—C10−149.0 (2)Br1—C20—C21—C22179.9 (2)
N2—C1—C9—C14161.4 (2)C20—C21—C22—C17−0.8 (4)
C5—C1—C9—C14−85.3 (3)C18—C17—C22—C21−0.3 (4)
C6—C1—C9—C1436.3 (3)C15—C17—C22—C21−174.0 (2)
C14—C9—C10—C11−0.6 (4)
D—H···AD—HH···AD···AD—H···A
N7—H7b···O160.83 (2)1.95 (3)2.726 (3)155 (3)
N7—H7a···O8i0.86 (3)2.00 (3)2.861 (3)176 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N7—H7b⋯O160.83 (2)1.95 (3)2.726 (3)155 (3)
N7—H7a⋯O8i0.86 (3)2.00 (3)2.861 (3)176 (3)

Symmetry code: (i) .

  4 in total

1.  What can be Expected from Non-nucleoside Reverse Transcriptase Inhibitors (NNRTIs) in the Treatment of Human Immunodeficiency Virus Type 1 (HIV-1) Infections?

Authors: 
Journal:  Rev Med Virol       Date:  1996-06       Impact factor: 6.989

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  1-Substituted derivatives of 2-phenylpyrrolidine-2-carboxamide.

Authors:  Rafael Tamazyan; Harutyun Karapetyan; Ashot Martirosyan; Vahagn Hovhannesyan; Sahak Gasparyan
Journal:  Acta Crystallogr C       Date:  2002-06-12       Impact factor: 1.172

4.  1-Substituted derivatives of 2-aryl-5-oxopyrrolidine-2-carboxylic acid.

Authors:  Harutyun Karapetyan; Rafael Tamazyan; Ashot Martirosyan; Vahagn Hovhannesyan; Sahak Gasparyan
Journal:  Acta Crystallogr C       Date:  2002-06-20       Impact factor: 1.172

  4 in total

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