Literature DB >> 21201905

5'-Chloro-spiro-[1,3-dioxolane-2,3'-indolin]-2'-one: a potential anti-convulsant.

Amitabha De1.   

Abstract

The title compound, C(10)H(8)ClNO(3), is a significant anti-convulsant agent. The indolinone system is essentially planar, the dihedral angle between the rings being 2.24 (8)°. The dioxolane ring adopts an envelope conformation; the dihedral angle between the plane through its four coplanar atoms and the indolinone system is 89.8 (1)°. The crystal structure is stabilized by a three-dimensional network of inter-molecular N-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21201905      PMCID: PMC2960872          DOI: 10.1107/S160053680800336X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Codding et al. (1984 ▶); De (1990 ▶, 1992 ▶); De & Kitagawa (1991a ▶,b ▶); De & Kusunoki (1991 ▶); Dickerson & Geis (1969 ▶); Itai et al. (1978 ▶); James & Williams (1972 ▶); Popp (1977 ▶, 1984 ▶); Rajopadhye & Popp (1988 ▶); Chakraborty & Talapatra (1985 ▶); Chakraborty et al. (1985 ▶).

Experimental

Crystal data

C10H8ClNO3 M = 225.62 Monoclinic, a = 18.266 (2) Å b = 7.360 (1) Å c = 14.821 (1) Å β = 92.855 (7)° V = 1990.0 (4) Å3 Z = 8 Mo Kα radiation μ = 0.37 mm−1 T = 298 (2) K 0.50 × 0.30 × 0.30 mm

Data collection

Rigaku AFC-4 diffractometer Absorption correction: none 2479 measured reflections 2297 independent reflections 1591 reflections with I > 2σ(I) R int = 0.042 3 standard reflections every 100 reflections intensity decay: 0.2%

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.189 S = 0.83 2297 reflections 160 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.52 e Å−3 Data collection: AFC-4 Diffractometer Control Software (Rigaku, 1997 ▶); cell refinement: AFC-4 Diffractometer Control Software; data reduction: AFC-4 Diffractometer Control Software; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP (Johnson, 1965 ▶); software used to prepare material for publication: SHELXL97 and PARST (Nardelli, 1983 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680800336X/er2049sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680800336X/er2049Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8ClNO3F000 = 928
Mr = 225.62Dx = 1.506 Mg m3Dm = 1.498 Mg m3Dm measured by flotation
Monoclinic, I2/cMelting point: 460 K
Hall symbol: -I 2ycMo Kα radiation λ = 0.71073 Å
a = 18.266 (2) ÅCell parameters from 25 reflections
b = 7.360 (1) Åθ = 2.2–27.5º
c = 14.821 (1) ŵ = 0.37 mm1
β = 92.855 (7)ºT = 298 (2) K
V = 1990.0 (4) Å3Needle, colourless
Z = 80.50 × 0.30 × 0.30 mm
Rigaku AFC-4 diffractometerRint = 0.042
Radiation source: fine-focus sealed tubeθmax = 27.5º
Monochromator: graphiteθmin = 2.2º
T = 298(2) Kh = −23→23
ω scansk = 0→9
Absorption correction: nonel = 0→19
2479 measured reflections3 standard reflections
2297 independent reflections every 100 reflections
1591 reflections with I > 2σ(I) intensity decay: 0.2%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.189  w = 1/[σ2(Fo2) + (0.1365P)2 + 2.6179P] where P = (Fo2 + 2Fc2)/3
S = 0.83(Δ/σ)max = 0.006
2297 reflectionsΔρmax = 0.34 e Å3
160 parametersΔρmin = −0.52 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement on F2 for ALL reflections except for 0 with very negative F2 or flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating _R_factor_obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.40898 (6)−0.00775 (11)0.43060 (5)0.0825 (4)
O10.3184 (2)0.5049 (4)0.0001 (2)0.0931 (9)
O20.37608 (10)0.5934 (2)0.18885 (12)0.0534 (5)
O30.45532 (9)0.4244 (2)0.11210 (12)0.0494 (4)
N10.28723 (12)0.2542 (4)0.0815 (2)0.0612 (6)
C10.3263 (2)0.4038 (4)0.0651 (2)0.0596 (7)
C20.38452 (12)0.4261 (3)0.1450 (2)0.0442 (5)
C30.36853 (11)0.2671 (3)0.20354 (15)0.0418 (5)
C40.40017 (12)0.2147 (3)0.2858 (2)0.0446 (5)
C50.3712 (2)0.0628 (3)0.3264 (2)0.0516 (6)
C60.3125 (2)−0.0317 (4)0.2873 (2)0.0634 (8)
C70.2809 (2)0.0217 (4)0.2041 (2)0.0606 (7)
C80.31030 (12)0.1704 (3)0.1639 (2)0.0484 (5)
C90.4219 (2)0.7216 (4)0.1450 (2)0.0678 (8)
C100.4787 (2)0.6085 (4)0.1035 (3)0.0759 (9)
H40.4389 (16)0.275 (4)0.3142 (18)0.051 (7)*
H60.2955 (19)−0.126 (5)0.316 (2)0.069 (9)*
H70.234 (2)−0.037 (5)0.181 (2)0.077 (10)*
H10.2565 (18)0.206 (5)0.047 (2)0.062 (9)*
H910.393 (2)0.792 (6)0.102 (3)0.110 (14)*
H920.441 (2)0.808 (7)0.189 (3)0.086 (11)*
H1010.52600.62630.13510.08*
H1020.48220.64010.04030.08*
U11U22U33U12U13U23
Cl10.1293 (9)0.0619 (5)0.0567 (5)0.0119 (4)0.0092 (5)0.0165 (3)
O10.099 (2)0.100 (2)0.077 (2)0.0173 (14)−0.0313 (13)0.0273 (14)
O20.0595 (10)0.0389 (9)0.0630 (10)0.0018 (7)0.0167 (8)−0.0016 (7)
O30.0459 (8)0.0434 (9)0.0594 (10)0.0071 (7)0.0089 (7)0.0065 (7)
N10.0475 (11)0.0723 (15)0.0617 (13)0.0053 (11)−0.0181 (10)−0.0182 (12)
C10.0552 (13)0.065 (2)0.0573 (14)0.0149 (12)−0.0140 (11)0.0000 (12)
C20.0427 (10)0.0426 (11)0.0467 (11)0.0043 (8)−0.0024 (8)0.0014 (9)
C30.0367 (9)0.0384 (10)0.0500 (11)0.0013 (8)−0.0004 (8)−0.0026 (9)
C40.0426 (11)0.0400 (11)0.0509 (12)−0.0019 (9)−0.0016 (9)−0.0015 (9)
C50.0677 (14)0.0371 (11)0.0514 (12)0.0043 (10)0.0157 (11)0.0016 (9)
C60.077 (2)0.0349 (11)0.081 (2)−0.0119 (12)0.031 (2)−0.0082 (12)
C70.0508 (13)0.0505 (14)0.081 (2)−0.0119 (11)0.0094 (12)−0.0206 (13)
C80.0393 (10)0.0447 (11)0.0608 (13)0.0020 (9)0.0001 (9)−0.0156 (10)
C90.083 (2)0.0459 (14)0.076 (2)−0.0025 (13)0.022 (2)0.0066 (14)
C100.086 (2)0.051 (2)0.095 (2)−0.0020 (15)0.041 (2)0.005 (2)
Cl1—C51.740 (3)C4—C51.386 (3)
O1—C11.220 (4)C4—H40.92 (3)
O2—C21.404 (3)C5—C61.381 (4)
O2—C91.438 (3)C6—C71.392 (5)
O3—C21.405 (3)C6—H60.88 (4)
O3—C101.429 (4)C7—C81.369 (4)
N1—C11.341 (4)C7—H71.01 (4)
N1—C81.412 (4)C9—C101.487 (4)
N1—H10.82 (3)C9—H910.96 (4)
C1—C21.560 (3)C9—H920.96 (4)
C2—C31.494 (3)C10—H1010.97
C3—C41.378 (3)C10—H1020.97
C3—C81.386 (3)
C2—O2—C9106.6 (2)C4—C5—Cl1118.8 (2)
C2—O3—C10107.9 (2)C5—C6—C7120.6 (2)
C1—N1—C8112.1 (2)C5—C6—H6118.9 (23)
C1—N1—H1126.8 (23)C7—C6—H6120.5 (23)
C8—N1—H1120.7 (23)C8—C7—C6117.2 (2)
O1—C1—N1127.0 (3)C8—C7—H7123.0 (21)
O1—C1—C2125.8 (3)C6—C7—H7119.1 (21)
N1—C1—C2107.3 (2)C7—C8—C3122.4 (2)
O3—C2—O2107.0 (2)C7—C8—N1128.2 (2)
O3—C2—C3113.9 (2)C3—C8—N1109.4 (2)
O2—C2—C3112.9 (2)O2—C9—C10104.7 (2)
O3—C2—C1109.8 (2)O2—C9—H91109.6 (26)
O2—C2—C1110.9 (2)C10—C9—H91113.8 (26)
C3—C2—C1102.3 (2)O2—C9—H92109.0 (23)
C4—C3—C8120.7 (2)C10—C9—H92114.7 (24)
C4—C3—C2130.3 (2)H91—C9—H92105.0 (36)
C8—C3—C2108.9 (2)O3—C10—C9106.0 (2)
C3—C4—C5117.2 (2)O3—C10—H101110.3
C3—C4—H4123.2 (17)C9—C10—H101111.0
C5—C4—H4119.6 (17)O3—C10—H102110.3
C6—C5—C4122.0 (3)C9—C10—H102110.3
C6—C5—Cl1119.2 (2)H101—C10—H102110.0
C9—O2—C2—O328.9 (2)O2—C2—C3—C8118.8 (2)
C9—O2—C2—C1−90.9 (2)O3—C2—C3—C463.6 (3)
C9—O2—C2—C3155.0 (2)O3—C2—C3—C8−118.9 (2)
C2—O2—C9—C10−23.5 (3)C1—C2—C3—C4−177.9 (2)
C10—O3—C2—O2−22.6 (3)C1—C2—C3—C8−0.4 (2)
C10—O3—C2—C197.9 (2)C2—C3—C4—C5177.2 (2)
C10—O3—C2—C3−148.1 (2)C2—C3—C8—N10.9 (3)
C2—O3—C10—C97.5 (3)C2—C3—C8—C7−176.9 (2)
C8—N1—C1—O1−179.1 (3)C4—C3—C8—N1178.7 (2)
C8—N1—C1—C20.8 (3)C4—C3—C8—C70.9 (4)
C1—N1—C8—C3−1.1 (3)C3—C4—C5—Cl1−179.6 (2)
C1—N1—C8—C7176.6 (3)C3—C4—C5—C6−0.9 (4)
O1—C1—C2—O259.0 (4)Cl1—C5—C6—C7179.8 (2)
O1—C1—C2—O3−59.1 (4)C4—C5—C6—C71.0 (4)
O1—C1—C2—C3179.7 (3)C5—C6—C7—C8−0.2 (4)
N1—C1—C2—O2−120.9 (2)C6—C7—C8—N1−178.1 (3)
N1—C1—C2—O3121.0 (2)C6—C7—C8—C3−0.7 (4)
N1—C1—C2—C3−0.2 (3)O2—C9—C10—O39.7 (3)
O2—C2—C3—C4−58.7 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.82 (3)2.11 (3)2.885 (4)157.4 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.82 (3)2.11 (3)2.885 (4)157.4 (3)

Symmetry code: (i) .

  3 in total

1.  Potential anticonvulsants. 11. Synthesis and anticonvulsant activity of spiro[1,3-dioxolane-2,3'-indolin]-2'-ones and structural analogues.

Authors:  M Rajopadhye; F D Popp
Journal:  J Med Chem       Date:  1988-05       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Cyheptamide and 3-hydroxy-3-phenacyloxindole: structural similarity to diphenylhydantoin as the basis for anticonvulsant activity.

Authors:  P W Codding; T A Lee; J F Richardson
Journal:  J Med Chem       Date:  1984-05       Impact factor: 7.446

  3 in total
  2 in total

1.  (E)-5-Chloro-3-(2,6-dichloro-benzyl-idene)-indolin-2-one.

Authors:  Hongming Zhang; Haribabu Ankati; Shashidhar Kumar Akubathini; Ed Biehl
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-11

2.  (Z)-5-Fluoro-3-[(1H-pyrrol-2-yl)methyl-ene]indolin-2-one.

Authors:  Hongming Zhang; Haribabu Ankati; Shashidhar Kumar Akubathini; Ed Biehl
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-03
  2 in total

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