Literature DB >> 21201875

Diammonium diaqua-bis(malonato-κO,O')cobaltate(II) dihydrate.

Haiyun Xu1, Fengwu Wang.   

Abstract

The title complex, (NH(4))(2)[Co(C(3)H(3)O(4))(2)(H(2)O)(2)]·2H(2)O, features a six-coordinate Co atom located on a center of symmetry. The octa-hedral O(6) coordination geometry is defined by two bidentate malonate ligands and two water mol-ecules, with the latter in a trans configuration. The mol-ecules are linked through O-H⋯O and N-H⋯O hydrogen-bonding inter-actions, forming a three-dimensional supra-molecular network.

Entities:  

Year:  2008        PMID: 21201875      PMCID: PMC2960805          DOI: 10.1107/S1600536808004625

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Delgado et al. (2006 ▶); Saadeh et al. (1993 ▶); Wang et al. (2005 ▶); Wuest (2005 ▶); Yolanda et al. (2002 ▶).

Experimental

Crystal data

(NH4)2[Co(C3H3O4)2(H2O)2]·2H2O M = 371.17 Triclinic, a = 6.950 (2) Å b = 7.075 (2) Å c = 7.433 (2) Å α = 89.032 (5)° β = 73.076 (5)° γ = 88.062 (5)° V = 349.45 (17) Å3 Z = 1 Mo Kα radiation μ = 1.29 mm−1 T = 298 (2) K 0.24 × 0.21 × 0.18 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.747, T max = 0.801 1817 measured reflections 1285 independent reflections 1246 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.107 S = 1.09 1285 reflections 97 parameters 4 restraints H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.76 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808004625/tk2245sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808004625/tk2245Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(NH4)2[Co(C3H3O4)2(H2O)2]·2H2OZ = 1
Mr = 371.17F000 = 193
Triclinic, P1Dx = 1.764 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 6.950 (2) ÅCell parameters from 1285 reflections
b = 7.075 (2) Åθ = 2.9–25.5º
c = 7.433 (2) ŵ = 1.29 mm1
α = 89.032 (5)ºT = 298 (2) K
β = 73.076 (5)ºBlock, purple
γ = 88.062 (5)º0.24 × 0.21 × 0.18 mm
V = 349.45 (17) Å3
Bruker SMART APEX CCD diffractometer1285 independent reflections
Radiation source: fine-focus sealed tube1246 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.057
T = 298(2) Kθmax = 25.5º
φ and ω scansθmin = 2.9º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.747, Tmax = 0.801k = −7→8
1817 measured reflectionsl = −6→8
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.107  w = 1/[σ2(Fo2) + (0.0668P)2 + 0.0816P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
1285 reflectionsΔρmax = 0.39 e Å3
97 parametersΔρmin = −0.76 e Å3
4 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.00001.00000.50000.0246 (2)
C10.2349 (4)0.7294 (4)0.2083 (4)0.0302 (6)
C20.3182 (4)0.6385 (4)0.3572 (4)0.0371 (7)
H2A0.36960.51280.31430.045*
H2B0.43200.71080.36380.045*
C30.1802 (4)0.6198 (3)0.5553 (3)0.0265 (5)
N10.1772 (4)0.2806 (4)0.0011 (3)0.0438 (6)
H1B0.08250.27150.10310.053*
H1A0.25580.1845−0.03090.053*
H1C0.10820.3123−0.07260.053*
H1D0.24700.37540.00710.053*
O10.1213 (3)0.8738 (3)0.2439 (2)0.0322 (4)
O20.2920 (4)0.6563 (3)0.0484 (3)0.0501 (6)
O30.0789 (3)0.7649 (2)0.6328 (2)0.0315 (4)
O40.1752 (3)0.4670 (2)0.6380 (3)0.0371 (5)
O50.2733 (3)1.1242 (3)0.4906 (3)0.0347 (5)
H5A0.36941.11790.38930.042*
H5B0.25131.23740.52960.042*
O60.6141 (3)0.0563 (3)0.2034 (3)0.0391 (5)
H6B0.70110.00790.25210.047*
H6A0.67290.11330.10380.047*
U11U22U33U12U13U23
Co10.0283 (3)0.0183 (3)0.0245 (3)0.00435 (19)−0.0037 (2)−0.00096 (19)
C10.0355 (14)0.0214 (13)0.0272 (13)−0.0012 (11)0.0012 (11)−0.0005 (10)
C20.0345 (15)0.0327 (15)0.0364 (15)0.0115 (12)0.0003 (12)0.0024 (12)
C30.0301 (13)0.0227 (13)0.0276 (13)0.0007 (10)−0.0103 (11)−0.0007 (10)
N10.0573 (17)0.0370 (14)0.0322 (13)0.0090 (12)−0.0063 (12)−0.0035 (10)
O10.0394 (11)0.0270 (10)0.0266 (9)0.0088 (8)−0.0047 (8)−0.0021 (7)
O20.0817 (18)0.0295 (11)0.0280 (11)0.0148 (11)−0.0001 (11)−0.0061 (8)
O30.0435 (11)0.0218 (9)0.0250 (9)0.0067 (8)−0.0040 (8)0.0008 (7)
O40.0534 (13)0.0203 (10)0.0353 (11)0.0045 (9)−0.0099 (9)0.0013 (8)
O50.0310 (10)0.0241 (10)0.0430 (11)0.0009 (8)−0.0012 (8)−0.0054 (8)
O60.0400 (11)0.0414 (12)0.0322 (11)−0.0001 (9)−0.0054 (9)0.0059 (9)
Co1—O12.0502 (18)C2—H2B0.9699
Co1—O1i2.0502 (18)C3—O41.231 (3)
Co1—O3i2.0592 (17)C3—O31.272 (3)
Co1—O32.0592 (17)N1—H1B0.8500
Co1—O5i2.1020 (19)N1—H1A0.8500
Co1—O52.1020 (19)N1—H1C0.8500
C1—O21.252 (3)N1—H1D0.8500
C1—O11.253 (3)O5—H5A0.8498
C1—C21.516 (4)O5—H5B0.8498
C2—C31.512 (4)O6—H6B0.8500
C2—H2A0.9699O6—H6A0.8378
O1—Co1—O1i180C1—C2—H2A107.8
O1—Co1—O3i89.76 (7)C3—C2—H2B107.3
O1i—Co1—O3i90.24 (7)C1—C2—H2B107.8
O1—Co1—O390.24 (7)H2A—C2—H2B107.1
O1i—Co1—O389.76 (7)O4—C3—O3122.4 (2)
O3i—Co1—O3180O4—C3—C2119.0 (2)
O1—Co1—O5i87.61 (8)O3—C3—C2118.6 (2)
O1i—Co1—O5i92.39 (8)H1B—N1—H1A116.6
O3i—Co1—O5i90.37 (8)H1B—N1—H1C99.2
O3—Co1—O5i89.63 (8)H1A—N1—H1C116.0
O1—Co1—O592.39 (8)H1B—N1—H1D109.3
O1i—Co1—O587.61 (8)H1A—N1—H1D108.6
O3i—Co1—O589.63 (8)H1C—N1—H1D106.4
O3—Co1—O590.37 (8)C1—O1—Co1127.52 (17)
O5i—Co1—O5180C3—O3—Co1127.00 (16)
O2—C1—O1122.7 (3)Co1—O5—H5A118.7
O2—C1—C2116.3 (2)Co1—O5—H5B109.9
O1—C1—C2121.0 (2)H5A—O5—H5B111.0
C3—C2—C1118.6 (2)H6B—O6—H6A109.3
C3—C2—H2A107.7
D—H···AD—HH···AD···AD—H···A
O5—H5A···O6ii0.851.902.723 (3)164
O5—H5B···O4ii0.851.822.663 (3)172
O6—H6A···O1iii0.842.573.336 (3)153
O6—H6A···O2iii0.841.952.704 (3)149
O6—H6B···O3iv0.852.573.063 (3)118
O6—H6B···O5iv0.852.172.879 (3)141
N1—H1A···O6v0.852.162.950 (3)155
N1—H1B···O3vi0.851.972.805 (3)165
N1—H1C···O4vii0.852.332.988 (3)135
N1—H1D···O20.852.062.857 (4)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5A⋯O6i0.851.902.723 (3)164
O5—H5B⋯O4i0.851.822.663 (3)172
O6—H6A⋯O1ii0.842.573.336 (3)153
O6—H6A⋯O2ii0.841.952.704 (3)149
O6—H6B⋯O3iii0.852.573.063 (3)118
O6—H6B⋯O5iii0.852.172.879 (3)141
N1—H1A⋯O6iv0.852.162.950 (3)155
N1—H1B⋯O3v0.851.972.805 (3)165
N1—H1C⋯O4vi0.852.332.988 (3)135
N1—H1D⋯O20.852.062.857 (4)155

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  2 in total

1.  Engineering crystals by the strategy of molecular tectonics.

Authors:  James D Wuest
Journal:  Chem Commun (Camb)       Date:  2005-11-08       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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