Literature DB >> 21201871

cis-Dichlorido[4,4,5,5-tetra-methyl-2-(2-pyrid-yl)-2-imidazoline-1-ox-yl]-palladium(II) tetra-hydro-furan hemi-solvate.

Sihem Badeche, Djamil Azzedine Rouag, Sabrina Benmebarek, Salah-Eddine Bouaoud, Stéphane Golhen.   

Abstract

The asymmetric unit of the title complex, [PdCl(2)(C(12)H(16)N(3)O)]·0.5C(4)H(8)O, consists of one palladium complex in a general position and one half tetra-hydro-furan (THF) solvent mol-ecule, with the O atom lying on a twofold rotation axis. The Pd(II) atom is bound to one chelating imino nitroxide radical through two N atoms, one from the pyridyl ring and the other from the imidazoline ring. The coordination of the metal centre is completed by two Cl atoms in a cis configuration, leading to a quasi-square-planar coordination of the metal centre. The four atoms that define the Pd(II) coordination environment and the eight atoms that belong to the pyridylimine fragment are coplanar, with no deviation larger than 0.087 (5) Å. In the crystal structure, inter-molecular inter-actions shorter than the corresponding van der Waals radii sum are observed only between Pd(II) complexes, and no short contact is observed around the THF mol-ecule. Weak C-H⋯O and C-H⋯Cl inter-actions yield a two-dimensional network of complexes in the (101) plane.

Entities:  

Year:  2008        PMID: 21201871      PMCID: PMC2960750          DOI: 10.1107/S1600536808004406

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Caneschi et al. (1991 ▶); Davis et al. (1972 ▶); Evans et al. (1968 ▶); Fettouhi et al. (2003 ▶); Li et al. (2004 ▶); Ma et al. (2006 ▶, 2007 ▶); Oshio et al. (1996 ▶); Ueda et al. (2003 ▶, 2005 ▶); Ullman & Holm (1970 ▶); Xu et al. (2007 ▶).

Experimental

Crystal data

[PdCl2(C12H16N3O)]·0.5C4H8O M = 431.65 Monoclinic, a = 19.1398 (10) Å b = 15.2061 (12) Å c = 13.8291 (10) Å β = 123.415 (3)° V = 3359.6 (4) Å3 Z = 8 Mo Kα radiation μ = 1.43 mm−1 T = 293 (2) K 0.7 × 0.3 × 0.3 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: none 5707 measured reflections 3065 independent reflections 2049 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.152 S = 1.03 3065 reflections 199 parameters H-atom parameters constrained Δρmax = 0.61 e Å−3 Δρmin = −0.95 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: HKL SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: HKL DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808004406/dn2318sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808004406/dn2318Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdCl2(C12H16N3O)]·0.5C4H8OF000 = 1736
Mr = 431.65Dx = 1.707 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2981 reflections
a = 19.1398 (10) Åθ = 2.6–25.4º
b = 15.2061 (12) ŵ = 1.43 mm1
c = 13.8291 (10) ÅT = 293 (2) K
β = 123.415 (3)ºThick plate, brown
V = 3359.6 (4) Å30.7 × 0.3 × 0.3 mm
Z = 8
Nonius KappaCCD diffractometer2049 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.059
Monochromator: graphiteθmax = 25.4º
T = 293(2) Kθmin = 3.0º
φ and ω scansh = −22→22
Absorption correction: nonek = −17→18
5707 measured reflectionsl = −16→16
3065 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.152  w = 1/[σ2(Fo2) + (0.0709P)2 + 4.5052P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
3065 reflectionsΔρmax = 0.61 e Å3
199 parametersΔρmin = −0.95 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. Multiscan absorption correction methods did not yield a better refinement agreement, then no correction was applied.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4332 (5)0.2973 (4)0.6038 (6)0.0604 (18)
H10.41960.35110.62140.073*
C20.4905 (5)0.2955 (5)0.5741 (8)0.072 (2)
H20.51540.34750.57230.087*
C30.5113 (5)0.2173 (5)0.5470 (6)0.0603 (18)
H30.54970.21510.52580.072*
C40.4733 (5)0.1419 (4)0.5520 (6)0.0558 (18)
H40.48510.08770.53300.067*
C50.4172 (4)0.1475 (4)0.5858 (5)0.0443 (14)
C60.3741 (4)0.0747 (4)0.5988 (5)0.0445 (14)
C70.3264 (5)−0.0669 (4)0.6000 (6)0.0560 (17)
C80.2934 (4)0.0028 (4)0.6501 (6)0.0498 (16)
C90.2604 (6)−0.0980 (6)0.4783 (7)0.081 (2)
H9A0.2328−0.04790.42940.122*
H9B0.2201−0.13390.48060.122*
H9C0.2867−0.13170.44800.122*
C100.3725 (5)−0.1451 (5)0.6789 (8)0.078 (2)
H10A0.3899−0.18430.64150.117*
H10B0.3359−0.17570.69460.117*
H10C0.4208−0.12460.75030.117*
C110.1983 (5)0.0032 (5)0.5897 (7)0.076 (2)
H11A0.18240.05010.62020.114*
H11B0.1805−0.05200.60300.114*
H11C0.17230.01160.50800.114*
C120.3364 (5)−0.0032 (5)0.7811 (6)0.067 (2)
H12A0.3951−0.01430.81670.101*
H12B0.3121−0.05020.79940.101*
H12C0.32920.05130.80980.101*
N10.3961 (3)0.2250 (3)0.6084 (5)0.0470 (12)
N20.3857 (4)−0.0129 (3)0.5888 (5)0.0512 (13)
N30.3211 (3)0.0884 (3)0.6270 (5)0.0509 (13)
O10.4363 (3)−0.0447 (3)0.5657 (5)0.0687 (14)
Cl10.21890 (16)0.20499 (14)0.7093 (2)0.0865 (7)
Cl20.30744 (14)0.36626 (13)0.67356 (19)0.0761 (6)
Pd10.30983 (3)0.21827 (3)0.65241 (5)0.0534 (2)
O1S0.50000.4980 (7)0.75000.177 (7)
C2S0.5251 (8)0.5487 (7)0.6926 (10)0.108 (3)
H2S10.49490.53190.61160.130*
H2S20.58450.54080.72630.130*
C3S0.5078 (9)0.6386 (6)0.7032 (11)0.118 (4)
H3S10.45900.65950.63120.142*
H3S20.55520.67580.72350.142*
U11U22U33U12U13U23
C10.069 (5)0.050 (4)0.066 (5)0.003 (3)0.040 (4)−0.004 (3)
C20.077 (6)0.059 (5)0.091 (6)−0.023 (4)0.052 (5)−0.002 (4)
C30.060 (4)0.068 (5)0.065 (5)−0.006 (4)0.041 (4)0.000 (4)
C40.071 (5)0.053 (4)0.064 (5)0.003 (3)0.050 (4)0.003 (3)
C50.050 (4)0.045 (3)0.039 (3)−0.002 (3)0.026 (3)−0.002 (3)
C60.050 (4)0.046 (3)0.048 (4)0.004 (3)0.034 (3)0.003 (3)
C70.068 (5)0.046 (3)0.073 (5)−0.006 (3)0.050 (4)0.001 (3)
C80.050 (4)0.053 (4)0.054 (4)0.000 (3)0.034 (4)0.008 (3)
C90.095 (7)0.079 (5)0.083 (6)−0.018 (5)0.057 (6)−0.017 (5)
C100.100 (7)0.060 (5)0.105 (7)0.009 (4)0.075 (6)0.022 (4)
C110.061 (5)0.085 (6)0.091 (6)−0.010 (4)0.048 (5)0.000 (5)
C120.074 (5)0.078 (5)0.060 (5)−0.003 (4)0.044 (4)0.005 (4)
N10.051 (3)0.043 (3)0.049 (3)−0.002 (2)0.029 (3)0.002 (2)
N20.059 (3)0.043 (3)0.067 (4)0.006 (3)0.044 (3)0.006 (2)
N30.056 (3)0.052 (3)0.057 (3)0.006 (3)0.039 (3)0.005 (2)
O10.083 (4)0.052 (3)0.103 (4)0.014 (3)0.072 (4)0.004 (3)
Cl10.0970 (17)0.0960 (15)0.1066 (18)0.0216 (13)0.0814 (16)0.0034 (12)
Cl20.0873 (15)0.0578 (10)0.0865 (15)0.0200 (10)0.0499 (13)−0.0037 (9)
Pd10.0586 (4)0.0552 (3)0.0549 (4)0.0116 (3)0.0366 (3)−0.0002 (2)
O1S0.249 (17)0.068 (6)0.35 (2)0.0000.246 (18)0.000
C2S0.116 (9)0.094 (7)0.134 (10)−0.007 (6)0.081 (8)−0.014 (7)
C3S0.178 (12)0.073 (6)0.142 (10)−0.025 (7)0.113 (10)−0.009 (6)
C1—N11.329 (8)C10—H10A0.9600
C1—C21.367 (11)C10—H10B0.9600
C1—H10.9300C10—H10C0.9600
C2—C31.370 (10)C11—H11A0.9600
C2—H20.9300C11—H11B0.9600
C3—C41.381 (9)C11—H11C0.9600
C3—H30.9300C12—H12A0.9600
C4—C51.388 (8)C12—H12B0.9600
C4—H40.9300C12—H12C0.9600
C5—N11.338 (7)N1—Pd12.052 (5)
C5—C61.451 (8)N2—O11.269 (6)
C6—N31.289 (7)N3—Pd12.037 (5)
C6—N21.370 (8)Cl1—Pd12.280 (2)
C7—N21.476 (8)Cl2—Pd12.273 (2)
C7—C91.520 (11)O1S—C2Si1.370 (10)
C7—C101.524 (10)O1S—C2S1.370 (10)
C7—C81.576 (9)C2S—C3S1.433 (13)
C8—N31.505 (8)C2S—H2S10.9700
C8—C121.526 (9)C2S—H2S20.9700
C8—C111.529 (10)C3S—C3Si1.479 (18)
C9—H9A0.9600C3S—H3S10.9700
C9—H9B0.9600C3S—H3S20.9700
C9—H9C0.9600
N1—C1—C2122.5 (6)H10B—C10—H10C109.5
N1—C1—H1118.8C8—C11—H11A109.5
C2—C1—H1118.8C8—C11—H11B109.5
C1—C2—C3120.1 (7)H11A—C11—H11B109.5
C1—C2—H2120.0C8—C11—H11C109.5
C3—C2—H2120.0H11A—C11—H11C109.5
C2—C3—C4117.9 (6)H11B—C11—H11C109.5
C2—C3—H3121.1C8—C12—H12A109.5
C4—C3—H3121.1C8—C12—H12B109.5
C3—C4—C5119.4 (6)H12A—C12—H12B109.5
C3—C4—H4120.3C8—C12—H12C109.5
C5—C4—H4120.3H12A—C12—H12C109.5
N1—C5—C4121.5 (6)H12B—C12—H12C109.5
N1—C5—C6112.1 (5)C1—N1—C5118.6 (6)
C4—C5—C6126.3 (6)C1—N1—Pd1126.5 (4)
N3—C6—N2112.8 (5)C5—N1—Pd1114.9 (4)
N3—C6—C5120.7 (5)O1—N2—C6125.7 (5)
N2—C6—C5126.4 (5)O1—N2—C7123.5 (5)
N2—C7—C9106.0 (6)C6—N2—C7110.6 (5)
N2—C7—C10109.5 (6)C6—N3—C8110.5 (5)
C9—C7—C10110.5 (7)C6—N3—Pd1112.6 (4)
N2—C7—C8100.9 (5)C8—N3—Pd1136.0 (4)
C9—C7—C8113.9 (6)N3—Pd1—N179.58 (19)
C10—C7—C8115.1 (6)N3—Pd1—Cl2173.28 (15)
N3—C8—C12106.3 (5)N1—Pd1—Cl293.72 (14)
N3—C8—C11109.4 (5)N3—Pd1—Cl198.44 (15)
C12—C8—C11110.5 (5)N1—Pd1—Cl1176.70 (15)
N3—C8—C7102.5 (4)Cl2—Pd1—Cl188.28 (8)
C12—C8—C7113.4 (6)C2Si—O1S—C2S111.5 (11)
C11—C8—C7114.1 (6)O1S—C2S—C3S107.6 (9)
C7—C9—H9A109.5O1S—C2S—H2S1110.2
C7—C9—H9B109.5C3S—C2S—H2S1110.2
H9A—C9—H9B109.5O1S—C2S—H2S2110.2
C7—C9—H9C109.5C3S—C2S—H2S2110.2
H9A—C9—H9C109.5H2S1—C2S—H2S2108.5
H9B—C9—H9C109.5C2S—C3S—C3Si105.0 (6)
C7—C10—H10A109.5C2S—C3S—H3S1110.7
C7—C10—H10B109.5C3Si—C3S—H3S1110.7
H10A—C10—H10B109.5C2S—C3S—H3S2110.7
C7—C10—H10C109.5C3Si—C3S—H3S2110.7
H10A—C10—H10C109.5H3S1—C3S—H3S2108.8
D—H···AD—HH···AD···AD—H···A
C4—H4···O1ii0.932.613.307 (8)132
C10—H10B···Cl1iii0.962.773.691 (7)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O1i0.932.613.307 (8)132
C10—H10B⋯Cl1ii0.962.773.691 (7)160

Symmetry codes: (i) ; (ii) .

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