| Literature DB >> 21201871 |
Sihem Badeche, Djamil Azzedine Rouag, Sabrina Benmebarek, Salah-Eddine Bouaoud, Stéphane Golhen.
Abstract
The asymmetric unit of the title complex, [PdCl(2)(C(12)H(16)N(3)O)]·0.5C(4)H(8)O, consists of one palladium complex in a general position and one half tetra-hydro-furan (THF) solvent mol-ecule, with the O atom lying on a twofold rotation axis. The Pd(II) atom is bound to one chelating imino nitroxide radical through two N atoms, one from the pyridyl ring and the other from the imidazoline ring. The coordination of the metal centre is completed by two Cl atoms in a cis configuration, leading to a quasi-square-planar coordination of the metal centre. The four atoms that define the Pd(II) coordination environment and the eight atoms that belong to the pyridylimine fragment are coplanar, with no deviation larger than 0.087 (5) Å. In the crystal structure, inter-molecular inter-actions shorter than the corresponding van der Waals radii sum are observed only between Pd(II) complexes, and no short contact is observed around the THF mol-ecule. Weak C-H⋯O and C-H⋯Cl inter-actions yield a two-dimensional network of complexes in the (101) plane.Entities:
Year: 2008 PMID: 21201871 PMCID: PMC2960750 DOI: 10.1107/S1600536808004406
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [PdCl2(C12H16N3O)]·0.5C4H8O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2981 reflections |
| θ = 2.6–25.4º | |
| µ = 1.43 mm−1 | |
| β = 123.415 (3)º | Thick plate, brown |
| 0.7 × 0.3 × 0.3 mm | |
| Nonius KappaCCD diffractometer | 2049 reflections with |
| Radiation source: fine-focus sealed tube | |
| Monochromator: graphite | θmax = 25.4º |
| θmin = 3.0º | |
| φ and ω scans | |
| Absorption correction: none | |
| 5707 measured reflections | |
| 3065 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.001 | |
| 3065 reflections | Δρmax = 0.61 e Å−3 |
| 199 parameters | Δρmin = −0.95 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Experimental. Multiscan absorption correction methods did not yield a better refinement agreement, then no correction was applied. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.4332 (5) | 0.2973 (4) | 0.6038 (6) | 0.0604 (18) | |
| H1 | 0.4196 | 0.3511 | 0.6214 | 0.073* | |
| C2 | 0.4905 (5) | 0.2955 (5) | 0.5741 (8) | 0.072 (2) | |
| H2 | 0.5154 | 0.3475 | 0.5723 | 0.087* | |
| C3 | 0.5113 (5) | 0.2173 (5) | 0.5470 (6) | 0.0603 (18) | |
| H3 | 0.5497 | 0.2151 | 0.5258 | 0.072* | |
| C4 | 0.4733 (5) | 0.1419 (4) | 0.5520 (6) | 0.0558 (18) | |
| H4 | 0.4851 | 0.0877 | 0.5330 | 0.067* | |
| C5 | 0.4172 (4) | 0.1475 (4) | 0.5858 (5) | 0.0443 (14) | |
| C6 | 0.3741 (4) | 0.0747 (4) | 0.5988 (5) | 0.0445 (14) | |
| C7 | 0.3264 (5) | −0.0669 (4) | 0.6000 (6) | 0.0560 (17) | |
| C8 | 0.2934 (4) | 0.0028 (4) | 0.6501 (6) | 0.0498 (16) | |
| C9 | 0.2604 (6) | −0.0980 (6) | 0.4783 (7) | 0.081 (2) | |
| H9A | 0.2328 | −0.0479 | 0.4294 | 0.122* | |
| H9B | 0.2201 | −0.1339 | 0.4806 | 0.122* | |
| H9C | 0.2867 | −0.1317 | 0.4480 | 0.122* | |
| C10 | 0.3725 (5) | −0.1451 (5) | 0.6789 (8) | 0.078 (2) | |
| H10A | 0.3899 | −0.1843 | 0.6415 | 0.117* | |
| H10B | 0.3359 | −0.1757 | 0.6946 | 0.117* | |
| H10C | 0.4208 | −0.1246 | 0.7503 | 0.117* | |
| C11 | 0.1983 (5) | 0.0032 (5) | 0.5897 (7) | 0.076 (2) | |
| H11A | 0.1824 | 0.0501 | 0.6202 | 0.114* | |
| H11B | 0.1805 | −0.0520 | 0.6030 | 0.114* | |
| H11C | 0.1723 | 0.0116 | 0.5080 | 0.114* | |
| C12 | 0.3364 (5) | −0.0032 (5) | 0.7811 (6) | 0.067 (2) | |
| H12A | 0.3951 | −0.0143 | 0.8167 | 0.101* | |
| H12B | 0.3121 | −0.0502 | 0.7994 | 0.101* | |
| H12C | 0.3292 | 0.0513 | 0.8098 | 0.101* | |
| N1 | 0.3961 (3) | 0.2250 (3) | 0.6084 (5) | 0.0470 (12) | |
| N2 | 0.3857 (4) | −0.0129 (3) | 0.5888 (5) | 0.0512 (13) | |
| N3 | 0.3211 (3) | 0.0884 (3) | 0.6270 (5) | 0.0509 (13) | |
| O1 | 0.4363 (3) | −0.0447 (3) | 0.5657 (5) | 0.0687 (14) | |
| Cl1 | 0.21890 (16) | 0.20499 (14) | 0.7093 (2) | 0.0865 (7) | |
| Cl2 | 0.30744 (14) | 0.36626 (13) | 0.67356 (19) | 0.0761 (6) | |
| Pd1 | 0.30983 (3) | 0.21827 (3) | 0.65241 (5) | 0.0534 (2) | |
| O1S | 0.5000 | 0.4980 (7) | 0.7500 | 0.177 (7) | |
| C2S | 0.5251 (8) | 0.5487 (7) | 0.6926 (10) | 0.108 (3) | |
| H2S1 | 0.4949 | 0.5319 | 0.6116 | 0.130* | |
| H2S2 | 0.5845 | 0.5408 | 0.7263 | 0.130* | |
| C3S | 0.5078 (9) | 0.6386 (6) | 0.7032 (11) | 0.118 (4) | |
| H3S1 | 0.4590 | 0.6595 | 0.6312 | 0.142* | |
| H3S2 | 0.5552 | 0.6758 | 0.7235 | 0.142* |
| C1 | 0.069 (5) | 0.050 (4) | 0.066 (5) | 0.003 (3) | 0.040 (4) | −0.004 (3) |
| C2 | 0.077 (6) | 0.059 (5) | 0.091 (6) | −0.023 (4) | 0.052 (5) | −0.002 (4) |
| C3 | 0.060 (4) | 0.068 (5) | 0.065 (5) | −0.006 (4) | 0.041 (4) | 0.000 (4) |
| C4 | 0.071 (5) | 0.053 (4) | 0.064 (5) | 0.003 (3) | 0.050 (4) | 0.003 (3) |
| C5 | 0.050 (4) | 0.045 (3) | 0.039 (3) | −0.002 (3) | 0.026 (3) | −0.002 (3) |
| C6 | 0.050 (4) | 0.046 (3) | 0.048 (4) | 0.004 (3) | 0.034 (3) | 0.003 (3) |
| C7 | 0.068 (5) | 0.046 (3) | 0.073 (5) | −0.006 (3) | 0.050 (4) | 0.001 (3) |
| C8 | 0.050 (4) | 0.053 (4) | 0.054 (4) | 0.000 (3) | 0.034 (4) | 0.008 (3) |
| C9 | 0.095 (7) | 0.079 (5) | 0.083 (6) | −0.018 (5) | 0.057 (6) | −0.017 (5) |
| C10 | 0.100 (7) | 0.060 (5) | 0.105 (7) | 0.009 (4) | 0.075 (6) | 0.022 (4) |
| C11 | 0.061 (5) | 0.085 (6) | 0.091 (6) | −0.010 (4) | 0.048 (5) | 0.000 (5) |
| C12 | 0.074 (5) | 0.078 (5) | 0.060 (5) | −0.003 (4) | 0.044 (4) | 0.005 (4) |
| N1 | 0.051 (3) | 0.043 (3) | 0.049 (3) | −0.002 (2) | 0.029 (3) | 0.002 (2) |
| N2 | 0.059 (3) | 0.043 (3) | 0.067 (4) | 0.006 (3) | 0.044 (3) | 0.006 (2) |
| N3 | 0.056 (3) | 0.052 (3) | 0.057 (3) | 0.006 (3) | 0.039 (3) | 0.005 (2) |
| O1 | 0.083 (4) | 0.052 (3) | 0.103 (4) | 0.014 (3) | 0.072 (4) | 0.004 (3) |
| Cl1 | 0.0970 (17) | 0.0960 (15) | 0.1066 (18) | 0.0216 (13) | 0.0814 (16) | 0.0034 (12) |
| Cl2 | 0.0873 (15) | 0.0578 (10) | 0.0865 (15) | 0.0200 (10) | 0.0499 (13) | −0.0037 (9) |
| Pd1 | 0.0586 (4) | 0.0552 (3) | 0.0549 (4) | 0.0116 (3) | 0.0366 (3) | −0.0002 (2) |
| O1S | 0.249 (17) | 0.068 (6) | 0.35 (2) | 0.000 | 0.246 (18) | 0.000 |
| C2S | 0.116 (9) | 0.094 (7) | 0.134 (10) | −0.007 (6) | 0.081 (8) | −0.014 (7) |
| C3S | 0.178 (12) | 0.073 (6) | 0.142 (10) | −0.025 (7) | 0.113 (10) | −0.009 (6) |
| C1—N1 | 1.329 (8) | C10—H10A | 0.9600 |
| C1—C2 | 1.367 (11) | C10—H10B | 0.9600 |
| C1—H1 | 0.9300 | C10—H10C | 0.9600 |
| C2—C3 | 1.370 (10) | C11—H11A | 0.9600 |
| C2—H2 | 0.9300 | C11—H11B | 0.9600 |
| C3—C4 | 1.381 (9) | C11—H11C | 0.9600 |
| C3—H3 | 0.9300 | C12—H12A | 0.9600 |
| C4—C5 | 1.388 (8) | C12—H12B | 0.9600 |
| C4—H4 | 0.9300 | C12—H12C | 0.9600 |
| C5—N1 | 1.338 (7) | N1—Pd1 | 2.052 (5) |
| C5—C6 | 1.451 (8) | N2—O1 | 1.269 (6) |
| C6—N3 | 1.289 (7) | N3—Pd1 | 2.037 (5) |
| C6—N2 | 1.370 (8) | Cl1—Pd1 | 2.280 (2) |
| C7—N2 | 1.476 (8) | Cl2—Pd1 | 2.273 (2) |
| C7—C9 | 1.520 (11) | O1S—C2Si | 1.370 (10) |
| C7—C10 | 1.524 (10) | O1S—C2S | 1.370 (10) |
| C7—C8 | 1.576 (9) | C2S—C3S | 1.433 (13) |
| C8—N3 | 1.505 (8) | C2S—H2S1 | 0.9700 |
| C8—C12 | 1.526 (9) | C2S—H2S2 | 0.9700 |
| C8—C11 | 1.529 (10) | C3S—C3Si | 1.479 (18) |
| C9—H9A | 0.9600 | C3S—H3S1 | 0.9700 |
| C9—H9B | 0.9600 | C3S—H3S2 | 0.9700 |
| C9—H9C | 0.9600 | ||
| N1—C1—C2 | 122.5 (6) | H10B—C10—H10C | 109.5 |
| N1—C1—H1 | 118.8 | C8—C11—H11A | 109.5 |
| C2—C1—H1 | 118.8 | C8—C11—H11B | 109.5 |
| C1—C2—C3 | 120.1 (7) | H11A—C11—H11B | 109.5 |
| C1—C2—H2 | 120.0 | C8—C11—H11C | 109.5 |
| C3—C2—H2 | 120.0 | H11A—C11—H11C | 109.5 |
| C2—C3—C4 | 117.9 (6) | H11B—C11—H11C | 109.5 |
| C2—C3—H3 | 121.1 | C8—C12—H12A | 109.5 |
| C4—C3—H3 | 121.1 | C8—C12—H12B | 109.5 |
| C3—C4—C5 | 119.4 (6) | H12A—C12—H12B | 109.5 |
| C3—C4—H4 | 120.3 | C8—C12—H12C | 109.5 |
| C5—C4—H4 | 120.3 | H12A—C12—H12C | 109.5 |
| N1—C5—C4 | 121.5 (6) | H12B—C12—H12C | 109.5 |
| N1—C5—C6 | 112.1 (5) | C1—N1—C5 | 118.6 (6) |
| C4—C5—C6 | 126.3 (6) | C1—N1—Pd1 | 126.5 (4) |
| N3—C6—N2 | 112.8 (5) | C5—N1—Pd1 | 114.9 (4) |
| N3—C6—C5 | 120.7 (5) | O1—N2—C6 | 125.7 (5) |
| N2—C6—C5 | 126.4 (5) | O1—N2—C7 | 123.5 (5) |
| N2—C7—C9 | 106.0 (6) | C6—N2—C7 | 110.6 (5) |
| N2—C7—C10 | 109.5 (6) | C6—N3—C8 | 110.5 (5) |
| C9—C7—C10 | 110.5 (7) | C6—N3—Pd1 | 112.6 (4) |
| N2—C7—C8 | 100.9 (5) | C8—N3—Pd1 | 136.0 (4) |
| C9—C7—C8 | 113.9 (6) | N3—Pd1—N1 | 79.58 (19) |
| C10—C7—C8 | 115.1 (6) | N3—Pd1—Cl2 | 173.28 (15) |
| N3—C8—C12 | 106.3 (5) | N1—Pd1—Cl2 | 93.72 (14) |
| N3—C8—C11 | 109.4 (5) | N3—Pd1—Cl1 | 98.44 (15) |
| C12—C8—C11 | 110.5 (5) | N1—Pd1—Cl1 | 176.70 (15) |
| N3—C8—C7 | 102.5 (4) | Cl2—Pd1—Cl1 | 88.28 (8) |
| C12—C8—C7 | 113.4 (6) | C2Si—O1S—C2S | 111.5 (11) |
| C11—C8—C7 | 114.1 (6) | O1S—C2S—C3S | 107.6 (9) |
| C7—C9—H9A | 109.5 | O1S—C2S—H2S1 | 110.2 |
| C7—C9—H9B | 109.5 | C3S—C2S—H2S1 | 110.2 |
| H9A—C9—H9B | 109.5 | O1S—C2S—H2S2 | 110.2 |
| C7—C9—H9C | 109.5 | C3S—C2S—H2S2 | 110.2 |
| H9A—C9—H9C | 109.5 | H2S1—C2S—H2S2 | 108.5 |
| H9B—C9—H9C | 109.5 | C2S—C3S—C3Si | 105.0 (6) |
| C7—C10—H10A | 109.5 | C2S—C3S—H3S1 | 110.7 |
| C7—C10—H10B | 109.5 | C3Si—C3S—H3S1 | 110.7 |
| H10A—C10—H10B | 109.5 | C2S—C3S—H3S2 | 110.7 |
| C7—C10—H10C | 109.5 | C3Si—C3S—H3S2 | 110.7 |
| H10A—C10—H10C | 109.5 | H3S1—C3S—H3S2 | 108.8 |
| H··· | ||||
| C4—H4···O1ii | 0.93 | 2.61 | 3.307 (8) | 132 |
| C10—H10B···Cl1iii | 0.96 | 2.77 | 3.691 (7) | 160 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C4—H4⋯O1i | 0.93 | 2.61 | 3.307 (8) | 132 |
| C10—H10 | 0.96 | 2.77 | 3.691 (7) | 160 |
Symmetry codes: (i) ; (ii) .