Literature DB >> 21201851

Dichlorido(9-methyl-adenine-κN)(η-penta-methyl-cyclo-penta-dien-yl)iridium(III) dichloromethane solvate.

Clemens Bruhn, Thomas Küger, Dirk Steinborn.   

Abstract

In the title complex, [Ir(C(10)H(15))Cl(2)(C(6)H(7)N(5))]·CH(2)Cl(2) or [Ir(η(5)-C(5)Me(5))Cl(2)(9-MeAde-κN(7))]·CH(2)Cl(2) (9-MeAde = 9-methyl-adenine), the coordination geometry of the Ir(III) atom approximates to a three-legged piano stool. The 9-methyl-adenine ligand is coordinated in a monodentate fashion to the Ir centre through its N-7 atom. The crystal structure contains centrosymmetric pairs of mol-ecules, inter-acting through two N-H⋯N hydrogen bonds. An intra-molecular N-H⋯Cl hydrogen bond is formed between the H atom of an NH(2) group and a chlorido ligand. Further short intra- and inter-molecular C-H⋯Cl contacts are observed.

Entities:  

Year:  2008        PMID: 21201851      PMCID: PMC2960857          DOI: 10.1107/S1600536808003760

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information, see: Lippert (2000 ▶); Houlton (2002 ▶). For related literature, see: Zhu et al. (2002 ▶); Gaballa et al. (2004 ▶, 2008 ▶); Aakeröy et al. (1999 ▶); Baldovino-Pantaleon et al. (2007 ▶); Davies et al. (2003 ▶); Huang et al. (1998 ▶); Jeffrey & Saenger (1994 ▶); Kistenmacher & Rossi (1977 ▶); McMullan et al. (1980 ▶).

Experimental

Crystal data

[Ir(C10H15)Cl2(C6H7N5)]·CH2Cl2 M = 632.41 Triclinic, a = 7.294 (2) Å b = 11.8698 (14) Å c = 13.649 (3) Å α = 71.338 (15)° β = 83.83 (3)° γ = 78.003 (14)° V = 1094.0 (4) Å3 Z = 2 Mo Kα radiation μ = 6.60 mm−1 T = 200 (2) K 0.19 × 0.15 × 0.13 mm

Data collection

Stoe STADI-4 diffractometer Absorption correction: multi-scan (X-RED; Stoe & Cie, 2002 ▶) T min = 0.32, T max = 0.43 4132 measured reflections 3807 independent reflections 3246 reflections with I > 2σ(I) R int = 0.068 1 standard reflections frequency: 60 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.125 S = 1.13 3807 reflections 250 parameters H-atom parameters constrained Δρmax = 2.87 e Å−3 Δρmin = −3.41 e Å−3 Data collection: STADI4 (Stoe & Cie, 2002 ▶); cell refinement: STADI4 (Stoe & Cie, 2002 ▶); data reduction: X-RED (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808003760/fj2096sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808003760/fj2096Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ir(C10H15)Cl2(C6H7N5)]·CH2Cl2Z = 2
Mr = 632.41F(000) = 612
Triclinic, P1Dx = 1.920 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.294 (2) ÅCell parameters from 32 reflections
b = 11.8698 (14) Åθ = 6.5–18.9°
c = 13.649 (3) ŵ = 6.60 mm1
α = 71.338 (15)°T = 200 K
β = 83.83 (3)°Block, colourless
γ = 78.003 (14)°0.19 × 0.15 × 0.13 mm
V = 1094.0 (4) Å3
Stoe STADI-4 diffractometer3246 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.068
graphiteθmax = 25.0°, θmin = 1.6°
profile data from ω/2θ scansh = −8→8
Absorption correction: multi-scan (X-RED; Stoe & Cie, 2002)k = −13→14
Tmin = 0.32, Tmax = 0.43l = −8→16
4132 measured reflections1 standard reflections every 60 min
3807 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H-atom parameters constrained
S = 1.13w = 1/[σ2(Fo2) + (0.0666P)2] where P = (Fo2 + 2Fc2)/3
3807 reflections(Δ/σ)max < 0.001
250 parametersΔρmax = 2.87 e Å3
0 restraintsΔρmin = −3.41 e Å3
0 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.9961 (15)−0.0640 (10)0.7978 (9)0.030 (2)
H21.0628−0.14500.81650.036*
C40.8452 (14)0.0945 (9)0.6832 (8)0.023 (2)
C50.7931 (13)0.1571 (8)0.7549 (7)0.019 (2)
C60.8617 (15)0.0991 (9)0.8549 (8)0.026 (2)
C80.6814 (13)0.2726 (9)0.6092 (8)0.020 (2)
H80.61980.34020.55730.024*
C90.7869 (16)0.1435 (10)0.4929 (8)0.029 (2)
H9A0.71370.21090.44160.035*
H9B0.73750.06960.50340.035*
H9C0.91850.13180.46820.035*
C100.2376 (14)0.3257 (10)0.7454 (8)0.028 (2)
C110.3065 (16)0.2573 (10)0.8485 (9)0.030 (3)
C120.2955 (15)0.3417 (11)0.9036 (8)0.031 (3)
C130.2174 (16)0.4615 (11)0.8368 (10)0.037 (3)
C140.1805 (14)0.4482 (10)0.7419 (9)0.030 (3)
C150.213 (2)0.2713 (14)0.6624 (11)0.053 (4)
H15A0.24820.32420.59450.064*
H15B0.08210.26320.66350.064*
H15C0.29410.19140.67540.064*
C160.3688 (18)0.1234 (10)0.8885 (11)0.045 (3)
H16A0.47890.10480.93010.054*
H16B0.40140.09070.83010.054*
H16C0.26710.08690.93150.054*
C170.3513 (19)0.3108 (14)1.0118 (9)0.050 (4)
H17A0.40300.37721.01970.060*
H17B0.44650.23661.02820.060*
H17C0.24120.29821.05910.060*
C180.180 (2)0.5756 (12)0.8658 (13)0.060 (4)
H18A0.21260.64200.80670.072*
H18B0.25550.56510.92430.072*
H18C0.04640.59460.88550.072*
C190.0889 (17)0.5477 (13)0.6515 (12)0.056 (4)
H19A0.08300.62630.66210.068*
H19B−0.03830.53610.64620.068*
H19C0.16270.54540.58760.068*
C200.331 (2)0.2130 (12)0.3148 (10)0.045 (3)
H20A0.21670.21110.28260.053*
H20B0.35330.29720.29030.053*
Cl10.5584 (4)0.5480 (2)0.6167 (2)0.0268 (5)
Cl20.7133 (4)0.4366 (2)0.8520 (2)0.0289 (6)
Cl30.2938 (5)0.1691 (3)0.4491 (3)0.0505 (8)
Cl40.5213 (6)0.1194 (4)0.2750 (4)0.0745 (12)
N10.9631 (12)−0.0139 (8)0.8738 (7)0.027 (2)
N30.9494 (13)−0.0174 (7)0.6998 (7)0.029 (2)
N60.8322 (13)0.1512 (8)0.9311 (7)0.031 (2)
H6A0.87890.11150.99210.037*
H6B0.76630.22490.91990.037*
N70.6850 (11)0.2692 (7)0.7069 (6)0.0188 (17)
N90.7732 (12)0.1709 (8)0.5912 (6)0.0233 (18)
Ir0.47641 (5)0.39087 (3)0.76639 (3)0.01833 (15)
U11U22U33U12U13U23
C20.030 (6)0.026 (6)0.033 (6)0.002 (5)−0.006 (5)−0.011 (5)
C40.025 (5)0.024 (5)0.026 (5)−0.008 (4)−0.003 (4)−0.011 (4)
C50.022 (5)0.017 (5)0.017 (5)−0.004 (4)0.001 (4)−0.006 (4)
C60.028 (6)0.023 (5)0.021 (5)0.002 (4)−0.003 (4)−0.003 (4)
C80.014 (5)0.017 (5)0.025 (5)0.002 (4)−0.004 (4)−0.004 (4)
C90.043 (7)0.025 (6)0.022 (5)−0.009 (5)0.006 (5)−0.011 (4)
C100.018 (5)0.040 (7)0.029 (6)−0.016 (5)0.005 (4)−0.011 (5)
C110.033 (6)0.025 (6)0.035 (6)−0.017 (5)0.016 (5)−0.009 (5)
C120.026 (6)0.043 (7)0.025 (6)−0.013 (5)0.010 (4)−0.012 (5)
C130.023 (6)0.030 (6)0.053 (8)0.005 (5)0.012 (5)−0.015 (6)
C140.018 (5)0.028 (6)0.037 (6)0.006 (4)−0.002 (4)−0.004 (5)
C150.055 (9)0.069 (10)0.053 (9)−0.046 (8)0.006 (7)−0.026 (8)
C160.048 (8)0.015 (6)0.064 (9)−0.014 (5)0.005 (6)0.001 (6)
C170.041 (7)0.074 (10)0.029 (7)−0.006 (7)0.006 (6)−0.013 (7)
C180.054 (9)0.041 (8)0.092 (12)0.003 (7)0.027 (8)−0.047 (8)
C190.019 (6)0.057 (9)0.068 (10)−0.001 (6)0.000 (6)0.012 (7)
C200.054 (8)0.037 (7)0.047 (8)−0.007 (6)−0.001 (6)−0.020 (6)
Cl10.0323 (14)0.0227 (13)0.0256 (13)−0.0081 (10)−0.0010 (10)−0.0057 (10)
Cl20.0349 (14)0.0274 (13)0.0295 (14)−0.0074 (11)−0.0051 (11)−0.0136 (11)
Cl30.055 (2)0.0467 (19)0.058 (2)−0.0206 (16)0.0060 (16)−0.0227 (16)
Cl40.071 (3)0.081 (3)0.072 (3)0.008 (2)0.009 (2)−0.042 (2)
N10.028 (5)0.018 (4)0.033 (5)0.000 (4)−0.002 (4)−0.008 (4)
N30.032 (5)0.015 (4)0.040 (6)0.001 (4)0.000 (4)−0.013 (4)
N60.043 (6)0.023 (5)0.023 (5)0.011 (4)−0.009 (4)−0.011 (4)
N70.021 (4)0.010 (4)0.020 (4)0.004 (3)−0.002 (3)−0.001 (3)
N90.029 (5)0.022 (4)0.019 (4)−0.006 (4)0.005 (3)−0.008 (4)
Ir0.0201 (2)0.0154 (2)0.0201 (2)−0.00199 (14)0.00201 (14)−0.00814 (15)
C2—N31.325 (14)C13—C181.494 (17)
C2—N11.331 (14)C13—Ir2.159 (11)
C2—H20.9500C14—C191.510 (16)
C4—N31.348 (13)C14—Ir2.153 (10)
C4—N91.375 (13)C15—H15A0.9800
C4—C51.386 (14)C15—H15B0.9800
C5—N71.392 (12)C15—H15C0.9800
C5—C61.410 (14)C16—H16A0.9800
C6—N11.349 (13)C16—H16B0.9800
C6—N61.349 (14)C16—H16C0.9800
C8—N71.325 (13)C17—H17A0.9800
C8—N91.335 (13)C17—H17B0.9800
C8—H80.9500C17—H17C0.9800
C9—N91.467 (13)C18—H18A0.9800
C9—H9A0.9800C18—H18B0.9800
C9—H9B0.9800C18—H18C0.9800
C9—H9C0.9800C19—H19A0.9800
C10—C141.414 (16)C19—H19B0.9800
C10—C111.463 (16)C19—H19C0.9800
C10—C151.514 (17)C20—Cl41.743 (13)
C10—Ir2.127 (10)C20—Cl31.745 (13)
C11—C121.419 (16)C20—H20A0.9900
C11—C161.493 (15)C20—H20B0.9900
C11—Ir2.165 (10)Cl1—Ir2.402 (3)
C12—C131.458 (16)Cl2—Ir2.423 (3)
C12—C171.484 (16)N6—H6A0.8800
C12—Ir2.164 (10)N6—H6B0.8800
C13—C141.413 (17)N7—Ir2.152 (8)
N3—C2—N1129.5 (10)C12—C17—H17A109.5
N3—C2—H2115.3C12—C17—H17B109.5
N1—C2—H2115.3H17A—C17—H17B109.5
N3—C4—N9127.0 (9)C12—C17—H17C109.5
N3—C4—C5127.0 (10)H17A—C17—H17C109.5
N9—C4—C5106.0 (9)H17B—C17—H17C109.5
C4—C5—N7108.9 (8)C13—C18—H18A109.5
C4—C5—C6116.4 (9)C13—C18—H18B109.5
N7—C5—C6134.6 (9)H18A—C18—H18B109.5
N1—C6—N6119.0 (9)C13—C18—H18C109.5
N1—C6—C5117.6 (9)H18A—C18—H18C109.5
N6—C6—C5123.4 (9)H18B—C18—H18C109.5
N7—C8—N9112.9 (8)C14—C19—H19A109.5
N7—C8—H8123.5C14—C19—H19B109.5
N9—C8—H8123.5H19A—C19—H19B109.5
N9—C9—H9A109.5C14—C19—H19C109.5
N9—C9—H9B109.5H19A—C19—H19C109.5
H9A—C9—H9B109.5H19B—C19—H19C109.5
N9—C9—H9C109.5Cl4—C20—Cl3112.3 (8)
H9A—C9—H9C109.5Cl4—C20—H20A109.2
H9B—C9—H9C109.5Cl3—C20—H20A109.2
C14—C10—C11107.9 (10)Cl4—C20—H20B109.2
C14—C10—C15126.5 (11)Cl3—C20—H20B109.2
C11—C10—C15125.3 (11)H20A—C20—H20B107.9
C14—C10—Ir71.7 (6)C2—N1—C6119.0 (9)
C11—C10—Ir71.5 (6)C2—N3—C4110.4 (9)
C15—C10—Ir127.3 (8)C6—N6—H6A120.0
C12—C11—C10107.0 (10)C6—N6—H6B120.0
C12—C11—C16126.9 (11)H6A—N6—H6B120.0
C10—C11—C16126.1 (11)C8—N7—C5104.9 (8)
C12—C11—Ir70.8 (6)C8—N7—Ir119.3 (6)
C10—C11—Ir68.7 (5)C5—N7—Ir132.2 (6)
C16—C11—Ir127.4 (8)C8—N9—C4107.2 (8)
C11—C12—C13108.4 (10)C8—N9—C9126.4 (9)
C11—C12—C17125.0 (12)C4—N9—C9126.3 (9)
C13—C12—C17126.6 (12)C10—Ir—N797.3 (4)
C11—C12—Ir70.9 (6)C10—Ir—C1438.6 (4)
C13—C12—Ir70.1 (6)N7—Ir—C14130.7 (4)
C17—C12—Ir125.7 (8)C10—Ir—C1365.1 (5)
C14—C13—C12107.3 (10)N7—Ir—C13160.2 (4)
C14—C13—C18127.1 (12)C14—Ir—C1338.3 (5)
C12—C13—C18125.6 (13)C10—Ir—C1265.4 (4)
C14—C13—Ir70.6 (6)N7—Ir—C12126.5 (4)
C12—C13—Ir70.4 (6)C14—Ir—C1264.8 (4)
C18—C13—Ir125.4 (9)C13—Ir—C1239.4 (4)
C13—C14—C10109.4 (10)C10—Ir—C1139.9 (4)
C13—C14—C19125.8 (12)N7—Ir—C1195.5 (4)
C10—C14—C19124.7 (12)C14—Ir—C1165.2 (4)
C13—C14—Ir71.1 (6)C13—Ir—C1165.3 (4)
C10—C14—Ir69.7 (6)C12—Ir—C1138.3 (4)
C19—C14—Ir126.8 (8)C10—Ir—Cl1112.7 (3)
C10—C15—H15A109.5N7—Ir—Cl186.0 (2)
C10—C15—H15B109.5C14—Ir—Cl193.1 (3)
H15A—C15—H15B109.5C13—Ir—Cl1108.6 (3)
C10—C15—H15C109.5C12—Ir—Cl1147.4 (3)
H15A—C15—H15C109.5C11—Ir—Cl1152.5 (3)
H15B—C15—H15C109.5C10—Ir—Cl2160.2 (3)
C11—C16—H16A109.5N7—Ir—Cl291.0 (2)
C11—C16—H16B109.5C14—Ir—Cl2138.2 (3)
H16A—C16—H16B109.5C13—Ir—Cl2103.0 (4)
C11—C16—H16C109.5C12—Ir—Cl295.2 (3)
H16A—C16—H16C109.5C11—Ir—Cl2121.6 (3)
H16B—C16—H16C109.5Cl1—Ir—Cl285.72 (9)
D—H···AD—HH···AD···AD—H···A
N6—H6A···N1i0.882.143.007 (13)170.
N6—H6B···Cl20.882.353.168 (10)155.
C8—H8···Cl10.952.773.237 (11)111.
C8—H8···Cl1ii0.952.653.537 (11)156.
C9—H9B···Cl3iii0.982.753.697 (13)163.
C20—H20B···Cl1ii0.992.753.519 (15)135.
C10—Ir2.127 (10)
C11—Ir2.165 (10)
C12—Ir2.164 (10)
C13—Ir2.159 (11)
C14—Ir2.153 (10)
Cl1—Ir2.402 (3)
Cl2—Ir2.423 (3)
N7—Ir2.152 (8)
N7—Ir—Cl186.0 (2)
N7—Ir—Cl291.0 (2)
Cl1—Ir—Cl285.72 (9)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N6—H6A⋯N1i0.882.143.007 (13)170
N6—H6B⋯Cl20.882.353.168 (10)155
C8—H8⋯Cl10.952.773.237 (11)111
C8—H8⋯Cl1ii0.952.653.537 (11)156
C9—H9B⋯Cl3iii0.982.753.697 (13)163
C20—H20B⋯Cl1ii0.992.753.519 (15)135

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, characterization, and structure of [[PtMe(3)(9-MeA)](3)] (9-MeAH = 9-Methyladenine): a cyclic trimeric platinum(IV) complex with a nucleobase.

Authors:  Xuhui Zhu; Eduard Rusanov; Ralph Kluge; Harry Schmidt; Dirk Steinborn
Journal:  Inorg Chem       Date:  2002-05-20       Impact factor: 5.165

3.  Protonated nucleobase ligands: synthesis, structure and characterization of 9-methyladeninium hexachloroplatinate and pentachloro(9-methyladeninium)platinum(IV).

Authors:  Akmal Gaballa; Harry Schmidt; Günter Hempel; Detlef Reichert; Christoph Wagner; Eduard Rusanov; Dirk Steinborn
Journal:  J Inorg Biochem       Date:  2004-03       Impact factor: 4.155

  3 in total
  1 in total

1.  N,N'-Bis[2-(methoxycarbonyl)ethyl]ethane-1,2-diammonium dichloride.

Authors:  Goran N Kaluderović; Anchan Paethanom; Christoph Wagner; Tibor J Sabo; Harry Schmidt
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-07
  1 in total

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