Literature DB >> 21201818

cis-3-(tert-Butoxy-carbonyl-amino)cyclo-hexa-necarboxylic acid.

Yu Hu, Xiaoxia Sun, Ying Guo, Hua Yao.   

Abstract

The title compound, C(12)H(21)NO(4), a γ-aminobutyric acid derivative, crystallizes with two mol-ecules in the asymmetric unit. The crystal structure is stabilized by inter-molecular N-H⋯O and O-H⋯O hydrogen bonds, forming a strand. An intramolecular N-H⋯O hydrogen bond is also observed.

Entities:  

Year:  2008        PMID: 21201818      PMCID: PMC2960558          DOI: 10.1107/S1600536808027098

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Allan et al. (1981 ▶); Amorin et al. (2003 ▶); Hu et al. (2006 ▶); Roberts et al. (1976 ▶); Schousboe (2000 ▶).

Experimental

Crystal data

C12H21NO4 M = 243.30 Triclinic, a = 5.854 (1) Å b = 10.000 (2) Å c = 23.014 (5) Å α = 85.64 (2)° β = 88.68 (2)° γ = 88.51 (2)° V = 1342.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 (2) K 0.56 × 0.46 × 0.20 mm

Data collection

Bruker SMART 1K area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.767, T max = 0.921 (expected range = 0.818–0.982) 5514 measured reflections 4822 independent reflections 2483 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.109 S = 0.81 4822 reflections 324 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 1999 ▶); cell refinement: SMART; data reduction: SAINT-Plus (Bruker, 1999 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXL97; software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808027098/bt2775sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808027098/bt2775Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H21NO4Z = 4
Mr = 243.30F000 = 528
Triclinic, P1Dx = 1.204 Mg m3
Hall symbol: -P 1Melting point: 409 K
a = 5.854 (1) ÅMo Kα radiation λ = 0.71073 Å
b = 10.000 (2) ÅCell parameters from 29 reflections
c = 23.014 (5) Åθ = 4.1–13.9º
α = 85.64 (2)ºµ = 0.09 mm1
β = 88.68 (2)ºT = 296 (2) K
γ = 88.51 (2)ºBlock, colorless
V = 1342.6 (4) Å30.56 × 0.46 × 0.20 mm
Bruker SMART 1K area-detector diffractometer4822 independent reflections
Radiation source: fine-focus sealed tube2483 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.017
T = 293(2) Kθmax = 25.3º
phi and ω scansθmin = 1.8º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = 0→7
Tmin = 0.767, Tmax = 0.921k = −11→11
5514 measured reflectionsl = −27→27
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109  w = 1/[σ2(Fo2) + (0.0564P)2] where P = (Fo2 + 2Fc2)/3
S = 0.81(Δ/σ)max < 0.001
4822 reflectionsΔρmax = 0.22 e Å3
324 parametersΔρmin = −0.17 e Å3
2 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0098 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6276 (3)0.87356 (14)0.15126 (6)0.0548 (5)
O20.5946 (3)1.03347 (15)0.21599 (7)0.0620 (5)
O30.6134 (3)0.64184 (19)0.45997 (9)0.0823 (6)
H30.63550.57780.48380.099*
O40.2737 (3)0.55582 (18)0.46040 (8)0.0797 (6)
N10.4694 (4)0.82327 (18)0.23756 (7)0.0481 (5)
C10.4318 (4)0.7291 (2)0.33857 (8)0.0408 (5)
H1C0.59600.71360.33920.049*
H1B0.36230.64900.32650.049*
C20.3427 (4)0.7572 (2)0.39994 (8)0.0384 (5)
H20.41830.83720.41130.046*
C30.0867 (4)0.7873 (2)0.39991 (9)0.0467 (6)
H3A0.00690.70800.39060.056*
H3B0.03580.80990.43840.056*
C40.0288 (4)0.9027 (2)0.35566 (10)0.0525 (6)
H4A0.09380.98430.36770.063*
H4B−0.13580.91600.35460.063*
C50.1199 (4)0.8768 (2)0.29489 (9)0.0536 (6)
H5A0.04240.80110.28100.064*
H5B0.08800.95470.26840.064*
C60.3752 (4)0.8474 (2)0.29527 (8)0.0403 (5)
H60.44930.92630.30830.048*
C70.5654 (4)0.9200 (2)0.20301 (9)0.0437 (6)
C80.7620 (4)0.9548 (2)0.10769 (9)0.0483 (6)
C90.6330 (5)1.0795 (3)0.08659 (11)0.0732 (8)
H9A0.48241.05670.07560.088*
H9B0.71201.12210.05350.088*
H9C0.62161.13970.11710.088*
C100.7906 (6)0.8626 (3)0.05895 (11)0.0877 (10)
H10A0.87050.78190.07290.105*
H10B0.87660.90660.02730.105*
H10C0.64300.84080.04560.105*
C110.9874 (5)0.9845 (3)0.13189 (13)0.0946 (11)
H11A0.96631.04920.16040.114*
H11B1.08661.02000.10100.114*
H11C1.05460.90360.14990.114*
C120.4076 (4)0.6421 (2)0.44293 (9)0.0414 (5)
O50.3565 (3)0.37430 (14)0.15151 (6)0.0550 (5)
O60.3842 (3)0.53682 (15)0.21453 (6)0.0597 (5)
O70.3647 (3)0.1116 (2)0.44631 (8)0.0765 (6)
H70.34450.05710.47430.092*
O80.7245 (3)0.08103 (17)0.47100 (7)0.0692 (5)
N20.5105 (3)0.32454 (17)0.23698 (7)0.0458 (5)
C130.5512 (4)0.2287 (2)0.33700 (8)0.0401 (5)
H13A0.63270.15040.32400.048*
H13B0.38920.21020.33850.048*
C140.6306 (4)0.2564 (2)0.39808 (8)0.0382 (5)
H140.54240.33470.41000.046*
C150.8821 (4)0.2927 (2)0.39721 (9)0.0477 (6)
H15A0.97570.21590.38730.057*
H15B0.92430.31590.43560.057*
C160.9262 (4)0.4108 (2)0.35278 (10)0.0543 (6)
H16A0.84740.49020.36560.065*
H16B1.08860.42800.35070.065*
C170.8453 (4)0.3842 (2)0.29241 (9)0.0536 (6)
H17A0.86780.46340.26600.064*
H17B0.93580.31100.27770.064*
C180.5954 (4)0.3489 (2)0.29415 (8)0.0395 (5)
H180.50810.42560.30800.047*
C190.4147 (4)0.4221 (2)0.20222 (9)0.0426 (6)
C200.2250 (4)0.4572 (2)0.10807 (9)0.0482 (6)
C210.3591 (5)0.5763 (3)0.08456 (11)0.0705 (8)
H21A0.37710.63590.11480.085*
H21B0.27910.62250.05280.085*
H21C0.50690.54650.07100.085*
C220.1969 (6)0.3620 (3)0.06073 (11)0.0893 (10)
H22A0.34470.33470.04630.107*
H22B0.11170.40650.02940.107*
H22C0.11640.28450.07640.107*
C23−0.0011 (5)0.4961 (3)0.13346 (12)0.0863 (10)
H23A−0.07160.41820.15220.104*
H23B−0.09720.53460.10300.104*
H23C0.01980.56070.16160.104*
C240.5776 (4)0.1408 (2)0.44197 (9)0.0426 (6)
H1A0.452 (4)0.7445 (12)0.2264 (9)0.048 (7)*
H2A0.522 (3)0.2460 (12)0.2249 (8)0.039 (6)*
U11U22U33U12U13U23
O10.0864 (13)0.0413 (9)0.0361 (9)−0.0087 (8)0.0145 (8)−0.0006 (7)
O20.1046 (15)0.0365 (9)0.0447 (10)−0.0099 (9)0.0104 (9)−0.0030 (8)
O30.0604 (13)0.0895 (15)0.0894 (15)−0.0081 (11)−0.0195 (11)0.0498 (11)
O40.0745 (14)0.0736 (13)0.0854 (14)−0.0219 (11)−0.0229 (10)0.0437 (11)
N10.0844 (16)0.0307 (11)0.0288 (10)−0.0057 (10)0.0068 (9)−0.0015 (9)
C10.0493 (14)0.0388 (12)0.0334 (12)0.0036 (10)0.0013 (10)0.0006 (9)
C20.0499 (14)0.0344 (11)0.0305 (11)−0.0003 (10)−0.0030 (10)0.0003 (9)
C30.0507 (15)0.0479 (14)0.0408 (13)0.0026 (11)0.0020 (11)−0.0007 (11)
C40.0536 (16)0.0525 (14)0.0504 (14)0.0098 (12)−0.0034 (12)0.0003 (12)
C50.0667 (18)0.0530 (15)0.0399 (14)0.0098 (13)−0.0113 (12)0.0041 (11)
C60.0584 (16)0.0356 (12)0.0266 (11)0.0001 (11)−0.0007 (10)−0.0006 (9)
C70.0648 (17)0.0345 (13)0.0313 (12)0.0029 (11)−0.0034 (11)0.0006 (10)
C80.0589 (16)0.0491 (14)0.0350 (12)−0.0040 (12)0.0051 (11)0.0082 (11)
C90.087 (2)0.0726 (18)0.0554 (16)0.0072 (16)0.0048 (15)0.0203 (14)
C100.139 (3)0.073 (2)0.0496 (17)−0.0045 (19)0.0331 (17)−0.0041 (15)
C110.066 (2)0.142 (3)0.071 (2)−0.012 (2)−0.0066 (16)0.028 (2)
C120.0492 (16)0.0454 (14)0.0294 (12)−0.0024 (12)−0.0003 (11)−0.0003 (10)
O50.0900 (13)0.0407 (9)0.0344 (9)0.0082 (8)−0.0216 (8)−0.0015 (7)
O60.1010 (14)0.0325 (9)0.0460 (10)0.0044 (9)−0.0174 (9)−0.0025 (7)
O70.0646 (13)0.0912 (15)0.0673 (13)−0.0167 (11)−0.0103 (10)0.0429 (10)
O80.0616 (12)0.0802 (12)0.0598 (11)0.0021 (10)−0.0067 (9)0.0342 (10)
N20.0777 (15)0.0305 (11)0.0291 (10)0.0044 (10)−0.0097 (9)−0.0011 (9)
C130.0491 (14)0.0377 (12)0.0334 (12)−0.0032 (10)−0.0063 (10)0.0011 (9)
C140.0526 (15)0.0335 (11)0.0281 (11)−0.0002 (10)−0.0027 (10)0.0006 (9)
C150.0576 (16)0.0470 (14)0.0385 (13)−0.0052 (11)−0.0095 (11)0.0003 (10)
C160.0569 (16)0.0544 (15)0.0516 (15)−0.0155 (12)−0.0063 (12)0.0035 (12)
C170.0651 (18)0.0549 (15)0.0389 (13)−0.0094 (13)0.0045 (12)0.0093 (11)
C180.0570 (15)0.0332 (11)0.0281 (11)0.0003 (10)−0.0029 (10)−0.0002 (9)
C190.0587 (16)0.0353 (13)0.0333 (12)−0.0016 (11)−0.0043 (11)0.0008 (10)
C200.0588 (16)0.0518 (14)0.0322 (12)0.0036 (12)−0.0077 (11)0.0098 (11)
C210.078 (2)0.0773 (19)0.0532 (16)−0.0065 (16)−0.0084 (14)0.0206 (14)
C220.138 (3)0.076 (2)0.0557 (18)0.0055 (19)−0.0464 (18)−0.0007 (15)
C230.063 (2)0.125 (3)0.0653 (19)0.0061 (18)−0.0004 (15)0.0247 (18)
C240.0528 (16)0.0483 (14)0.0265 (11)−0.0041 (12)−0.0032 (11)−0.0007 (10)
O1—C71.350 (2)O5—C191.349 (2)
O1—C81.468 (2)O5—C201.468 (2)
O2—C71.212 (2)O6—C191.210 (2)
O3—C121.276 (3)O7—C241.288 (3)
O3—H30.8200O7—H70.8200
O4—C121.220 (2)O8—C241.217 (2)
N1—C71.332 (3)N2—C191.334 (3)
N1—C61.461 (3)N2—C181.457 (3)
N1—H1A0.856 (9)N2—H2A0.854 (9)
C1—C61.522 (3)C13—C181.519 (3)
C1—C21.538 (3)C13—C141.538 (3)
C1—H1C0.9700C13—H13A0.9700
C1—H1B0.9700C13—H13B0.9700
C2—C121.507 (3)C14—C241.510 (3)
C2—C31.521 (3)C14—C151.525 (3)
C2—H20.9800C14—H140.9800
C3—C41.517 (3)C15—C161.526 (3)
C3—H3A0.9700C15—H15A0.9700
C3—H3B0.9700C15—H15B0.9700
C4—C51.524 (3)C16—C171.522 (3)
C4—H4A0.9700C16—H16A0.9700
C4—H4B0.9700C16—H16B0.9700
C5—C61.515 (3)C17—C181.513 (3)
C5—H5A0.9700C17—H17A0.9700
C5—H5B0.9700C17—H17B0.9700
C6—H60.9800C18—H180.9800
C8—C111.490 (3)C20—C231.489 (3)
C8—C91.496 (3)C20—C211.503 (3)
C8—C101.509 (3)C20—C221.515 (3)
C9—H9A0.9600C21—H21A0.9600
C9—H9B0.9600C21—H21B0.9600
C9—H9C0.9600C21—H21C0.9600
C10—H10A0.9600C22—H22A0.9600
C10—H10B0.9600C22—H22B0.9600
C10—H10C0.9600C22—H22C0.9600
C11—H11A0.9600C23—H23A0.9600
C11—H11B0.9600C23—H23B0.9600
C11—H11C0.9600C23—H23C0.9600
C7—O1—C8121.42 (16)C19—O5—C20121.23 (16)
C12—O3—H3109.5C24—O7—H7109.5
C7—N1—C6122.03 (18)C19—N2—C18121.92 (17)
C7—N1—H1A122.0 (15)C19—N2—H2A118.2 (14)
C6—N1—H1A115.9 (15)C18—N2—H2A119.8 (14)
C6—C1—C2110.34 (16)C18—C13—C14110.31 (16)
C6—C1—H1C109.6C18—C13—H13A109.6
C2—C1—H1C109.6C14—C13—H13A109.6
C6—C1—H1B109.6C18—C13—H13B109.6
C2—C1—H1B109.6C14—C13—H13B109.6
H1C—C1—H1B108.1H13A—C13—H13B108.1
C12—C2—C3112.57 (18)C24—C14—C15112.45 (18)
C12—C2—C1109.99 (16)C24—C14—C13111.16 (16)
C3—C2—C1110.88 (17)C15—C14—C13111.45 (17)
C12—C2—H2107.7C24—C14—H14107.2
C3—C2—H2107.7C15—C14—H14107.2
C1—C2—H2107.7C13—C14—H14107.2
C4—C3—C2110.80 (18)C14—C15—C16110.42 (18)
C4—C3—H3A109.5C14—C15—H15A109.6
C2—C3—H3A109.5C16—C15—H15A109.6
C4—C3—H3B109.5C14—C15—H15B109.6
C2—C3—H3B109.5C16—C15—H15B109.6
H3A—C3—H3B108.1H15A—C15—H15B108.1
C3—C4—C5111.78 (18)C17—C16—C15111.92 (18)
C3—C4—H4A109.3C17—C16—H16A109.2
C5—C4—H4A109.3C15—C16—H16A109.2
C3—C4—H4B109.3C17—C16—H16B109.2
C5—C4—H4B109.3C15—C16—H16B109.2
H4A—C4—H4B107.9H16A—C16—H16B107.9
C6—C5—C4111.06 (18)C18—C17—C16111.07 (18)
C6—C5—H5A109.4C18—C17—H17A109.4
C4—C5—H5A109.4C16—C17—H17A109.4
C6—C5—H5B109.4C18—C17—H17B109.4
C4—C5—H5B109.4C16—C17—H17B109.4
H5A—C5—H5B108.0H17A—C17—H17B108.0
N1—C6—C5112.69 (18)N2—C18—C17112.74 (18)
N1—C6—C1110.26 (16)N2—C18—C13110.10 (16)
C5—C6—C1110.66 (18)C17—C18—C13111.08 (17)
N1—C6—H6107.7N2—C18—H18107.6
C5—C6—H6107.7C17—C18—H18107.6
C1—C6—H6107.7C13—C18—H18107.6
O2—C7—N1125.2 (2)O6—C19—N2124.8 (2)
O2—C7—O1124.5 (2)O6—C19—O5125.00 (19)
N1—C7—O1110.26 (18)N2—C19—O5110.16 (18)
O1—C8—C11109.95 (19)O5—C20—C23110.03 (18)
O1—C8—C9111.3 (2)O5—C20—C21110.79 (19)
C11—C8—C9112.2 (2)C23—C20—C21112.6 (2)
O1—C8—C10102.23 (18)O5—C20—C22102.20 (18)
C11—C8—C10111.0 (2)C23—C20—C22110.8 (2)
C9—C8—C10109.7 (2)C21—C20—C22109.9 (2)
C8—C9—H9A109.5C20—C21—H21A109.5
C8—C9—H9B109.5C20—C21—H21B109.5
H9A—C9—H9B109.5H21A—C21—H21B109.5
C8—C9—H9C109.5C20—C21—H21C109.5
H9A—C9—H9C109.5H21A—C21—H21C109.5
H9B—C9—H9C109.5H21B—C21—H21C109.5
C8—C10—H10A109.5C20—C22—H22A109.5
C8—C10—H10B109.5C20—C22—H22B109.5
H10A—C10—H10B109.5H22A—C22—H22B109.5
C8—C10—H10C109.5C20—C22—H22C109.5
H10A—C10—H10C109.5H22A—C22—H22C109.5
H10B—C10—H10C109.5H22B—C22—H22C109.5
C8—C11—H11A109.5C20—C23—H23A109.5
C8—C11—H11B109.5C20—C23—H23B109.5
H11A—C11—H11B109.5H23A—C23—H23B109.5
C8—C11—H11C109.5C20—C23—H23C109.5
H11A—C11—H11C109.5H23A—C23—H23C109.5
H11B—C11—H11C109.5H23B—C23—H23C109.5
O4—C12—O3122.4 (2)O8—C24—O7123.0 (2)
O4—C12—C2122.7 (2)O8—C24—C14122.6 (2)
O3—C12—C2114.9 (2)O7—C24—C14114.4 (2)
C6—C1—C2—C12−177.75 (18)C18—C13—C14—C24177.21 (18)
C6—C1—C2—C357.1 (2)C18—C13—C14—C15−56.5 (2)
C12—C2—C3—C4−179.43 (18)C24—C14—C15—C16−179.33 (18)
C1—C2—C3—C4−55.7 (2)C13—C14—C15—C1655.1 (2)
C2—C3—C4—C555.1 (3)C14—C15—C16—C17−54.7 (3)
C3—C4—C5—C6−55.6 (3)C15—C16—C17—C1855.7 (3)
C7—N1—C6—C595.8 (3)C19—N2—C18—C17−91.8 (3)
C7—N1—C6—C1−140.0 (2)C19—N2—C18—C13143.5 (2)
C4—C5—C6—N1−179.42 (18)C16—C17—C18—N2179.19 (17)
C4—C5—C6—C156.6 (2)C16—C17—C18—C13−56.7 (2)
C2—C1—C6—N1177.30 (18)C14—C13—C18—N2−177.45 (17)
C2—C1—C6—C5−57.4 (2)C14—C13—C18—C1756.9 (2)
C6—N1—C7—O23.7 (4)C18—N2—C19—O6−1.7 (4)
C6—N1—C7—O1−176.82 (19)C18—N2—C19—O5178.42 (19)
C8—O1—C7—O26.9 (3)C20—O5—C19—O6−6.7 (3)
C8—O1—C7—N1−172.59 (19)C20—O5—C19—N2173.15 (19)
C7—O1—C8—C1161.5 (3)C19—O5—C20—C23−60.9 (3)
C7—O1—C8—C9−63.5 (3)C19—O5—C20—C2164.3 (3)
C7—O1—C8—C10179.4 (2)C19—O5—C20—C22−178.6 (2)
C3—C2—C12—O423.3 (3)C15—C14—C24—O8−3.1 (3)
C1—C2—C12—O4−100.9 (3)C13—C14—C24—O8122.6 (2)
C3—C2—C12—O3−156.4 (2)C15—C14—C24—O7176.5 (2)
C1—C2—C12—O379.5 (3)C13—C14—C24—O7−57.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O60.856 (9)2.163 (10)3.009 (2)169 (2)
N2—H2A···O2i0.854 (9)2.180 (11)3.013 (2)164.9 (19)
O3—H3···O4ii0.821.862.672 (2)172
O7—H7···O8iii0.821.842.656 (2)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O60.856 (9)2.163 (10)3.009 (2)169 (2)
N2—H2A⋯O2i0.854 (9)2.180 (11)3.013 (2)164.9 (19)
O3—H3⋯O4ii0.821.862.672 (2)172
O7—H7⋯O8iii0.821.842.656 (2)171

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  New cyclic peptide assemblies with hydrophobic cavities: the structural and thermodynamic basis of a new class of peptide nanotubes.

Authors:  Manuel Amorín; Luis Castedo; Juan R Granja
Journal:  J Am Chem Soc       Date:  2003-03-12       Impact factor: 15.419

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Pharmacological and functional characterization of astrocytic GABA transport: a short review.

Authors:  A Schousboe
Journal:  Neurochem Res       Date:  2000-10       Impact factor: 3.996

  3 in total

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