Literature DB >> 21201764

(R)-3,4,5-Tride-oxy-5,6-didehydro-1,2-O-(2,2,2-trichloro-ethyl-idene)-α-d-gluco-furan-ose-6,3-carbolactone: a new derivative of α-chloralose.

Violeta Aburto-Luna, Rosa-Luisa Meza-León, Sylvain Bernès.   

Abstract

THE TITLE COMPOUND [SYSTEMATIC NAME: (R)-2-trichloro-methyl-3a,3b,7a,8a-tetra-hydro-5H-pyrano[2',3':4,5]furano[2,3-d][1,3]dioxol-5-one], C(9)H(7)Cl(3)O(5), a triyclic system that contains a central α-d-furan-ose ring cis-fused with a dioxolane ring as well as a δ-lactone ring, exhibits a twisted conformation. The CCl(3) group has an axial orientation. The furan-ose ring approximates an envelope conformation due to the α,β-unsaturated lactone functionality. The asymmetric unit contains two independent mol-ecules with almost identical geometries.

Entities:  

Year:  2008        PMID: 21201764      PMCID: PMC2960566          DOI: 10.1107/S1600536808026196

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background regarding α-chloralose and δ-lactones, see: Collins et al. (1983 ▶); Zosimo-Landolfo & Tronchet (1999 ▶); Wu et al. (1992 ▶).

Experimental

Crystal data

C9H7Cl3O5 M = 301.50 Orthorhombic, a = 9.129 (4) Å b = 11.264 (4) Å c = 23.156 (7) Å V = 2381.1 (15) Å3 Z = 8 Mo Kα radiation μ = 0.77 mm−1 T = 298 (1) K 0.60 × 0.40 × 0.10 mm

Data collection

Siemens P4 diffractometer Absorption correction: ψ scan (XSCANS; Siemens, 1996 ▶) T min = 0.803, T max = 0.926 6901 measured reflections 4735 independent reflections 3838 reflections with I > 2σ(I) R int = 0.044 3 standard reflections every 97 reflections intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.111 S = 1.06 4735 reflections 307 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.35 e Å−3 Absolute structure: Flack (1983 ▶), 2010 Friedel pairs Flack parameter: 0.04 (8) Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808026196/pv2095sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026196/pv2095Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H7Cl3O5Dx = 1.682 Mg m3
Mr = 301.50Melting point = 416–418 K
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 78 reflections
a = 9.129 (4) Åθ = 4.6–12.4º
b = 11.264 (4) ŵ = 0.77 mm1
c = 23.156 (7) ÅT = 298 (1) K
V = 2381.1 (15) Å3Cell measurement pressure: 101(2) kPa
Z = 8Prism, colourless
F000 = 12160.60 × 0.40 × 0.10 mm
Siemens P4 diffractometerRint = 0.044
Radiation source: fine-focus sealed tubeθmax = 26.2º
Monochromator: graphiteθmin = 1.8º
T = 298(1) Kh = −11→11
ω scansk = −14→14
Absorption correction: ψ scan(XSCANS; Siemens, 1996)l = −28→28
Tmin = 0.803, Tmax = 0.9263 standard reflections
6901 measured reflections every 97 reflections
4735 independent reflections intensity decay: 2%
3838 reflections with I > 2σ(I)
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.044  w = 1/[σ2(Fo2) + (0.0319P)2 + 1.7306P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.111(Δ/σ)max < 0.001
S = 1.06Δρmax = 0.34 e Å3
4735 reflectionsΔρmin = −0.35 e Å3
307 parametersExtinction correction: none
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 2010 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.04 (8)
xyzUiso*/Ueq
Cl11.0538 (2)0.40323 (18)0.81819 (5)0.1242 (7)
Cl20.80275 (18)0.39332 (15)0.74470 (6)0.1046 (5)
Cl30.87777 (16)0.60974 (15)0.80223 (5)0.0921 (4)
O11.0741 (4)0.3469 (3)0.60422 (14)0.0810 (10)
C21.1264 (5)0.4432 (4)0.63415 (15)0.0612 (10)
H2A1.22770.46110.62320.073*
O21.1138 (3)0.4251 (3)0.69476 (11)0.0730 (9)
C31.0260 (4)0.5478 (3)0.62175 (13)0.0510 (8)
H3A1.07960.61650.60670.061*
O30.9574 (3)0.5723 (2)0.67532 (9)0.0533 (6)
C3A0.9171 (4)0.5005 (3)0.57924 (14)0.0486 (8)
H3AA0.81860.53170.58650.058*
O40.9700 (3)0.5335 (2)0.52305 (9)0.0540 (6)
C50.9475 (5)0.4644 (4)0.47699 (16)0.0626 (11)
O50.9798 (5)0.5044 (3)0.43064 (11)0.0863 (11)
C60.8919 (7)0.3451 (4)0.4862 (2)0.0852 (16)
H6A0.86210.30040.45460.102*
C70.8828 (7)0.2992 (4)0.5377 (2)0.0914 (18)
H7A0.84930.22180.54210.110*
C7A0.9250 (6)0.3685 (4)0.58927 (18)0.0684 (12)
H7AA0.86160.34690.62180.082*
C81.0435 (5)0.5219 (4)0.71861 (14)0.0561 (10)
H8A1.11580.57980.73230.067*
C90.9472 (5)0.4813 (4)0.76875 (16)0.0675 (12)
Cl110.48873 (14)0.45925 (9)0.55424 (4)0.0678 (3)
Cl120.32408 (13)0.58949 (15)0.47031 (5)0.0852 (4)
Cl130.63514 (12)0.59974 (13)0.46866 (4)0.0733 (3)
O110.3340 (3)0.6649 (2)0.68090 (10)0.0568 (7)
C120.3800 (5)0.7463 (3)0.63918 (14)0.0527 (9)
H12A0.33380.82390.64520.063*
O120.3488 (3)0.7016 (3)0.58318 (10)0.0583 (7)
C130.5434 (5)0.7557 (3)0.64229 (13)0.0503 (9)
H13A0.57790.83800.64430.060*
O130.5930 (3)0.6951 (2)0.59195 (10)0.0506 (6)
C13A0.5833 (4)0.6837 (3)0.69550 (14)0.0476 (8)
H13B0.67780.64330.69120.057*
O140.5842 (3)0.7680 (2)0.74220 (10)0.0552 (7)
C150.5407 (5)0.7344 (3)0.79577 (14)0.0547 (9)
O150.5549 (4)0.8058 (3)0.83396 (11)0.0814 (10)
C160.4746 (5)0.6189 (3)0.80334 (14)0.0598 (10)
H16A0.46260.58910.84050.072*
C170.4312 (5)0.5554 (3)0.75938 (15)0.0542 (9)
H17A0.38330.48360.76550.065*
C17A0.4586 (4)0.5981 (3)0.69935 (13)0.0460 (8)
H17B0.47500.53070.67340.055*
C180.4790 (4)0.7002 (3)0.55198 (14)0.0498 (8)
H18A0.48720.77240.52860.060*
C190.4815 (4)0.5908 (3)0.51320 (13)0.0500 (8)
U11U22U33U12U13U23
Cl10.1478 (14)0.1669 (16)0.0579 (6)0.0583 (13)0.0186 (8)0.0493 (9)
Cl20.1170 (11)0.1059 (11)0.0909 (9)−0.0468 (9)0.0423 (8)−0.0014 (8)
Cl30.0981 (9)0.1150 (11)0.0632 (6)0.0175 (8)0.0090 (6)−0.0219 (7)
O10.119 (3)0.0595 (19)0.0646 (18)0.0256 (19)0.0019 (19)0.0040 (15)
C20.068 (2)0.074 (3)0.0413 (18)0.009 (2)0.0125 (18)0.0106 (19)
O20.082 (2)0.094 (2)0.0429 (13)0.0327 (18)0.0134 (13)0.0182 (15)
C30.059 (2)0.0539 (19)0.0401 (16)−0.0027 (19)0.0064 (16)0.0059 (15)
O30.0669 (16)0.0559 (14)0.0371 (11)0.0089 (13)0.0027 (11)0.0023 (10)
C3A0.060 (2)0.0480 (19)0.0382 (16)−0.0023 (17)0.0064 (16)0.0007 (15)
O40.0784 (17)0.0454 (13)0.0380 (11)−0.0015 (13)0.0041 (13)0.0050 (10)
C50.089 (3)0.055 (2)0.0439 (19)0.008 (2)0.010 (2)−0.0023 (17)
O50.141 (3)0.0767 (19)0.0410 (13)0.003 (2)0.0180 (18)0.0018 (13)
C60.137 (5)0.059 (3)0.060 (3)−0.015 (3)0.002 (3)−0.015 (2)
C70.153 (5)0.054 (3)0.067 (3)−0.021 (3)0.008 (3)−0.004 (2)
C7A0.106 (4)0.051 (2)0.048 (2)−0.016 (2)0.009 (2)0.0023 (18)
C80.056 (2)0.071 (3)0.0408 (17)0.005 (2)0.0053 (17)0.0085 (17)
C90.075 (3)0.082 (3)0.0449 (19)0.009 (2)0.0119 (19)0.0139 (19)
Cl110.0934 (8)0.0501 (5)0.0599 (5)−0.0081 (5)0.0111 (6)−0.0027 (4)
Cl120.0661 (6)0.1375 (12)0.0518 (5)0.0059 (7)−0.0119 (5)−0.0211 (7)
Cl130.0659 (6)0.1098 (9)0.0443 (5)−0.0028 (6)0.0161 (4)0.0017 (6)
O110.0608 (16)0.0652 (17)0.0443 (13)0.0013 (13)−0.0010 (12)0.0127 (12)
C120.077 (3)0.047 (2)0.0342 (16)0.0121 (19)−0.0010 (17)−0.0003 (15)
O120.0589 (16)0.080 (2)0.0364 (12)0.0177 (14)−0.0038 (11)−0.0060 (12)
C130.075 (3)0.0403 (17)0.0355 (15)−0.0042 (18)0.0029 (16)0.0013 (14)
O130.0557 (14)0.0606 (16)0.0356 (11)−0.0098 (12)0.0012 (10)−0.0033 (11)
C13A0.063 (2)0.0419 (18)0.0377 (16)0.0000 (16)−0.0030 (15)−0.0069 (15)
O140.0838 (18)0.0433 (13)0.0386 (11)−0.0123 (13)−0.0030 (12)−0.0040 (10)
C150.080 (3)0.0457 (18)0.0378 (16)−0.0019 (19)−0.0027 (18)−0.0038 (15)
O150.137 (3)0.0614 (17)0.0461 (14)−0.0131 (19)−0.0012 (17)−0.0150 (14)
C160.093 (3)0.050 (2)0.0359 (16)0.001 (2)−0.0011 (19)0.0065 (15)
C170.080 (3)0.0399 (18)0.0430 (17)−0.0034 (18)−0.0025 (18)0.0076 (15)
C17A0.065 (2)0.0376 (16)0.0356 (14)0.0000 (17)−0.0054 (15)−0.0001 (13)
C180.062 (2)0.0500 (19)0.0376 (15)0.0018 (17)0.0035 (17)0.0075 (15)
C190.053 (2)0.064 (2)0.0326 (14)−0.0013 (19)0.0015 (14)−0.0001 (15)
Cl1—C91.741 (4)Cl11—C191.761 (4)
Cl2—C91.741 (5)Cl12—C191.747 (4)
Cl3—C91.760 (5)Cl13—C191.744 (4)
O1—C21.373 (6)O11—C121.397 (4)
O1—C7A1.426 (6)O11—C17A1.429 (4)
C2—O21.423 (4)C12—O121.420 (4)
C2—C31.520 (6)C12—C131.497 (6)
C2—H2A0.9800C12—H12A0.9800
O2—C81.381 (5)O12—C181.390 (4)
C3—O31.417 (4)C13—O131.424 (4)
C3—C3A1.497 (5)C13—C13A1.520 (5)
C3—H3A0.9800C13—H13A0.9800
O3—C81.395 (4)O13—C181.394 (4)
C3A—O41.436 (4)C13A—O141.439 (4)
C3A—C7A1.507 (6)C13A—C17A1.495 (5)
C3A—H3AA0.9800C13A—H13B0.9800
O4—C51.337 (5)O14—C151.356 (4)
C5—O51.201 (5)C15—O151.202 (4)
C5—C61.452 (7)C15—C161.445 (5)
C6—C71.302 (6)C16—C171.306 (5)
C6—H6A0.9300C16—H16A0.9300
C7—C7A1.478 (6)C17—C17A1.492 (5)
C7—H7A0.9300C17—H17A0.9300
C7A—H7AA0.9800C17A—H17B0.9800
C8—C91.527 (5)C18—C191.526 (5)
C8—H8A0.9800C18—H18A0.9800
C2—O1—C7A108.6 (4)C12—O11—C17A108.3 (3)
O1—C2—O2110.9 (4)O11—C12—O12109.8 (3)
O1—C2—C3107.9 (3)O11—C12—C13108.2 (3)
O2—C2—C3104.4 (3)O12—C12—C13105.6 (3)
O1—C2—H2A111.1O11—C12—H12A111.0
O2—C2—H2A111.1O12—C12—H12A111.0
C3—C2—H2A111.1C13—C12—H12A111.0
C8—O2—C2108.6 (3)C18—O12—C12107.9 (3)
O3—C3—C3A110.6 (3)O13—C13—C12104.1 (3)
O3—C3—C2104.6 (3)O13—C13—C13A109.4 (3)
C3A—C3—C2104.4 (3)C12—C13—C13A103.9 (3)
O3—C3—H3A112.3O13—C13—H13A112.9
C3A—C3—H3A112.3C12—C13—H13A112.9
C2—C3—H3A112.3C13A—C13—H13A112.9
C8—O3—C3107.5 (3)C18—O13—C13106.6 (3)
O4—C3A—C3106.3 (3)O14—C13A—C17A112.7 (3)
O4—C3A—C7A112.3 (3)O14—C13A—C13105.0 (3)
C3—C3A—C7A102.6 (3)C17A—C13A—C13102.1 (3)
O4—C3A—H3AA111.7O14—C13A—H13B112.1
C3—C3A—H3AA111.7C17A—C13A—H13B112.1
C7A—C3A—H3AA111.7C13—C13A—H13B112.1
C5—O4—C3A121.4 (3)C15—O14—C13A120.1 (3)
O5—C5—O4117.2 (4)O15—C15—O14117.0 (3)
O5—C5—C6124.4 (4)O15—C15—C16123.9 (3)
O4—C5—C6118.4 (3)O14—C15—C16119.0 (3)
C7—C6—C5121.6 (4)C17—C16—C15121.7 (3)
C7—C6—H6A119.2C17—C16—H16A119.1
C5—C6—H6A119.2C15—C16—H16A119.1
C6—C7—C7A120.9 (4)C16—C17—C17A119.9 (3)
C6—C7—H7A119.5C16—C17—H17A120.0
C7A—C7—H7A119.5C17A—C17—H17A120.0
O1—C7A—C7110.8 (5)O11—C17A—C17108.4 (3)
O1—C7A—C3A104.6 (4)O11—C17A—C13A104.4 (3)
C7—C7A—C3A112.6 (4)C17—C17A—C13A113.0 (3)
O1—C7A—H7AA109.6O11—C17A—H17B110.3
C7—C7A—H7AA109.6C17—C17A—H17B110.3
C3A—C7A—H7AA109.6C13A—C17A—H17B110.3
O2—C8—O3107.2 (3)O12—C18—O13107.1 (2)
O2—C8—C9109.6 (3)O12—C18—C19109.1 (3)
O3—C8—C9110.1 (3)O13—C18—C19110.3 (3)
O2—C8—H8A110.0O12—C18—H18A110.1
O3—C8—H8A110.0O13—C18—H18A110.1
C9—C8—H8A110.0C19—C18—H18A110.1
C8—C9—Cl1109.3 (3)C18—C19—Cl13108.3 (3)
C8—C9—Cl2111.3 (3)C18—C19—Cl12109.2 (3)
Cl1—C9—Cl2110.3 (3)Cl13—C19—Cl12109.01 (16)
C8—C9—Cl3107.2 (3)C18—C19—Cl11111.3 (2)
Cl1—C9—Cl3109.1 (2)Cl13—C19—Cl11109.7 (2)
Cl2—C9—Cl3109.6 (3)Cl12—C19—Cl11109.3 (2)
C7A—O1—C2—O294.8 (4)C17A—O11—C12—O1299.0 (3)
C7A—O1—C2—C3−19.0 (4)C17A—O11—C12—C13−15.8 (4)
O1—C2—O2—C8−128.5 (4)O11—C12—O12—C18−124.3 (3)
C3—C2—O2—C8−12.5 (5)C13—C12—O12—C18−7.8 (4)
O1—C2—C3—O3113.3 (3)O11—C12—C13—O13107.1 (3)
O2—C2—C3—O3−4.7 (4)O12—C12—C13—O13−10.4 (4)
O1—C2—C3—C3A−2.9 (4)O11—C12—C13—C13A−7.4 (4)
O2—C2—C3—C3A−120.9 (3)O12—C12—C13—C13A−124.9 (3)
C3A—C3—O3—C8132.0 (3)C12—C13—O13—C1825.0 (4)
C2—C3—O3—C820.1 (4)C13A—C13—O13—C18135.5 (3)
O3—C3—C3A—O4151.9 (3)O13—C13—C13A—O14157.7 (3)
C2—C3—C3A—O4−96.1 (3)C12—C13—C13A—O14−91.6 (3)
O3—C3—C3A—C7A−90.1 (4)O13—C13—C13A—C17A−84.5 (3)
C2—C3—C3A—C7A21.9 (4)C12—C13—C13A—C17A26.1 (3)
C3—C3A—O4—C5147.0 (4)C17A—C13A—O14—C1535.4 (5)
C7A—C3A—O4—C535.6 (5)C13—C13A—O14—C15145.7 (3)
C3A—O4—C5—O5171.5 (4)C13A—O14—C15—O15174.2 (4)
C3A—O4—C5—C6−10.9 (6)C13A—O14—C15—C16−8.6 (6)
O5—C5—C6—C7167.8 (6)O15—C15—C16—C17164.2 (5)
O4—C5—C6—C7−9.5 (8)O14—C15—C16—C17−12.7 (7)
C5—C6—C7—C7A1.8 (10)C15—C16—C17—C17A4.1 (7)
C2—O1—C7A—C7154.9 (4)C12—O11—C17A—C17153.7 (3)
C2—O1—C7A—C3A33.4 (4)C12—O11—C17A—C13A33.0 (3)
C6—C7—C7A—O1−93.4 (7)C16—C17—C17A—O11−92.0 (5)
C6—C7—C7A—C3A23.4 (8)C16—C17—C17A—C13A23.2 (5)
O4—C3A—C7A—O180.2 (4)O14—C13A—C17A—O1176.1 (3)
C3—C3A—C7A—O1−33.5 (4)C13—C13A—C17A—O11−35.9 (3)
O4—C3A—C7A—C7−40.1 (6)O14—C13A—C17A—C17−41.4 (4)
C3—C3A—C7A—C7−153.8 (4)C13—C13A—C17A—C17−153.5 (3)
C2—O2—C8—O325.7 (4)C12—O12—C18—O1323.9 (4)
C2—O2—C8—C9145.1 (4)C12—O12—C18—C19143.2 (3)
C3—O3—C8—O2−28.8 (4)C13—O13—C18—O12−30.9 (3)
C3—O3—C8—C9−147.9 (3)C13—O13—C18—C19−149.5 (3)
O2—C8—C9—Cl155.3 (4)O12—C18—C19—Cl13173.3 (2)
O3—C8—C9—Cl1173.0 (3)O13—C18—C19—Cl13−69.4 (3)
O2—C8—C9—Cl2−66.7 (4)O12—C18—C19—Cl1254.7 (3)
O3—C8—C9—Cl251.0 (4)O13—C18—C19—Cl12172.1 (2)
O2—C8—C9—Cl3173.4 (3)O12—C18—C19—Cl11−66.0 (3)
O3—C8—C9—Cl3−68.9 (4)O13—C18—C19—Cl1151.3 (4)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Alpha-chloralose suppression of neuronal activity.

Authors:  J G Collins; M Kawahara; E Homma; L M Kitahata
Journal:  Life Sci       Date:  1983-06-27       Impact factor: 5.037

  2 in total
  1 in total

1.  The Knoevenagel-Doebner reaction on 1,2-O-(2,2,2-trichloroethylidene) derivatives of D-gluco- and D-manno-furanose.

Authors:  Gökhan Kök; Tamer Karayıldırım; Kadir Ay; Emriye Ay
Journal:  Molecules       Date:  2010-10-29       Impact factor: 4.411

  1 in total

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