Literature DB >> 21201727

5,5-Bis(hydroxy-meth-yl)-3-methyl-cyclo-hex-2-enone.

Dongmei Cui, Qian Wang, Chen Zhang, Jianming Gu.   

Abstract

In the title compound, C(9)H(14)O(3), the cyclo-hexenone ring has an envelope conformation; the flap atom (with the hydroxy-methyl groups attached) is displaced by 0.582 (4) Å from the plane of the other five ring atoms. The crystal structure contains an inter-molecular O-H⋯O hydrogen-bonded ring.

Entities:  

Year:  2008        PMID: 21201727      PMCID: PMC2960602          DOI: 10.1107/S1600536808025063

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Aghil et al. (1992 ▶); Hu et al. (2003 ▶); Li & Strobel (2001 ▶); Luu et al. (2004 ▶).

Experimental

Crystal data

C9H14O3 M = 170.21 Triclinic, a = 5.9791 (3) Å b = 6.2251 (1) Å c = 13.7493 (8) Å α = 90.8104 (17)° β = 91.3285 (12)° γ = 117.0728 (15)° V = 455.38 (4) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 296 (1) K 0.43 × 0.40 × 0.20 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.958, T max = 0.982 4514 measured reflections 2060 independent reflections 1432 reflections with F 2 > 2σ(F 2) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.195 S = 1.01 2060 reflections 110 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.23 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶) and Larson (1970 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808025063/ez2128sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808025063/ez2128Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H14O3Z = 2
Mr = 170.21F000 = 184.00
Triclinic, P1Dx = 1.241 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71075 Å
a = 5.9791 (3) ÅCell parameters from 3491 reflections
b = 6.22510 (10) Åθ = 3.7–27.4º
c = 13.7493 (8) ŵ = 0.09 mm1
α = 90.8104 (17)ºT = 296 (1) K
β = 91.3285 (12)ºChunk, colorless
γ = 117.0728 (15)º0.43 × 0.40 × 0.20 mm
V = 455.38 (4) Å3
Rigaku R-AXIS RAPID diffractometer1432 reflections with F2 > 2σ(F2)
Detector resolution: 10.00 pixels mm-1Rint = 0.018
ω scansθmax = 27.5º
Absorption correction: multi-scan(ABSCOR; Higashi, 1995)h = −7→7
Tmin = 0.958, Tmax = 0.982k = −8→8
4514 measured reflectionsl = −17→17
2060 independent reflections
Refinement on F2  w = 1/[0.0027Fo2 + 5σ(Fo2) + 1]/(4Fo2)
R[F2 > 2σ(F2)] = 0.054(Δ/σ)max < 0.001
wR(F2) = 0.195Δρmax = 0.29 e Å3
S = 1.01Δρmin = −0.23 e Å3
2060 reflectionsExtinction correction: Larson (1970)
110 parametersExtinction coefficient: 107 (30)
H-atom parameters constrained
Refinement. Refinement using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
O11.1756 (3)1.1069 (3)0.16817 (14)0.0617 (6)
O20.8610 (2)0.5583 (3)0.38179 (12)0.0518 (5)
O30.3183 (3)0.5928 (4)0.43726 (12)0.0625 (6)
C10.6300 (3)0.7646 (4)0.31049 (14)0.0342 (5)
C20.4284 (4)0.7285 (4)0.23242 (14)0.0382 (6)
C30.5141 (4)0.7644 (4)0.13114 (16)0.0395 (6)
C40.7599 (4)0.8911 (4)0.11129 (17)0.0459 (6)
C50.9546 (4)1.0036 (4)0.18614 (18)0.0418 (6)
C60.8686 (4)0.9901 (4)0.29092 (17)0.0435 (6)
C70.3125 (5)0.6558 (5)0.05324 (18)0.0575 (8)
C80.6772 (4)0.5422 (4)0.31014 (16)0.0391 (6)
C90.5370 (4)0.7935 (5)0.41112 (17)0.0497 (7)
H40.80570.90660.04660.055*
H210.29490.56490.23650.046*
H220.36280.84180.24670.046*
H611.00130.99530.33430.052*
H620.84041.12910.30440.052*
H710.38750.6827−0.00930.069*
H720.20240.72940.05640.069*
H730.21830.48550.06260.069*
H810.52040.40120.32250.047*
H820.73440.52430.24650.047*
H910.66840.82090.45960.060*
H920.50420.93240.41030.060*
H2010.77360.48670.43570.067*
H3010.18880.61490.40490.081*
U11U22U33U12U13U23
O10.0437 (10)0.0582 (12)0.0750 (14)0.0149 (8)0.0195 (9)0.0154 (10)
O20.0403 (9)0.0843 (13)0.0433 (9)0.0383 (9)0.0072 (7)0.0232 (8)
O30.0444 (9)0.1166 (18)0.0398 (9)0.0471 (11)0.0123 (7)0.0284 (10)
C10.0325 (10)0.0441 (13)0.0296 (10)0.0205 (9)0.0006 (8)−0.0006 (8)
C20.0357 (10)0.0514 (14)0.0324 (11)0.0239 (10)0.0002 (8)0.0044 (9)
C30.0480 (12)0.0438 (13)0.0328 (11)0.0263 (11)−0.0014 (9)0.0041 (9)
C40.0556 (14)0.0524 (15)0.0333 (11)0.0272 (12)0.0097 (10)0.0090 (10)
C50.0422 (12)0.0347 (12)0.0508 (13)0.0190 (10)0.0108 (10)0.0086 (10)
C60.0423 (12)0.0411 (13)0.0437 (13)0.0163 (10)−0.0014 (10)−0.0049 (10)
C70.0663 (17)0.0717 (19)0.0387 (13)0.0360 (15)−0.0145 (12)−0.0003 (12)
C80.0371 (11)0.0488 (14)0.0366 (11)0.0238 (10)−0.0010 (9)0.0071 (9)
C90.0473 (13)0.0781 (19)0.0333 (12)0.0367 (13)0.0062 (10)0.0024 (12)
O1—C51.211 (2)O3—H3010.948
O2—C81.426 (3)C2—H210.970
O3—C91.395 (2)C2—H220.970
C1—C21.530 (3)C4—H40.930
C1—C61.512 (2)C6—H610.970
C1—C81.534 (4)C6—H620.970
C1—C91.541 (3)C7—H710.960
C2—C31.480 (3)C7—H720.960
C3—C41.351 (3)C7—H730.960
C3—C71.495 (3)C8—H810.970
C4—C51.445 (3)C8—H820.970
C5—C61.531 (3)C9—H910.970
O2—H2010.915C9—H920.970
C2—C1—C6109.76 (18)C3—C4—H4118.6
C2—C1—C8109.12 (18)C5—C4—H4118.6
C2—C1—C9109.4 (2)C1—C6—H61108.4
C6—C1—C8110.8 (2)C1—C6—H62108.4
C6—C1—C9108.79 (18)C5—C6—H61108.4
C8—C1—C9109.0 (2)C5—C6—H62108.4
C1—C2—C3115.5 (2)H61—C6—H62109.5
C2—C3—C4121.45 (19)C3—C7—H71109.5
C2—C3—C7115.92 (19)C3—C7—H72109.5
C4—C3—C7122.6 (2)C3—C7—H73109.5
C3—C4—C5122.9 (2)H71—C7—H72109.5
O1—C5—C4122.5 (2)H71—C7—H73109.5
O1—C5—C6120.8 (2)H72—C7—H73109.5
C4—C5—C6116.7 (2)O2—C8—H81108.6
C1—C6—C5113.84 (17)O2—C8—H82108.6
O2—C8—C1113.12 (18)C1—C8—H81108.6
O3—C9—C1113.6 (2)C1—C8—H82108.6
C8—O2—H201105.8H81—C8—H82109.5
C9—O3—H301103.4O3—C9—H91108.4
C1—C2—H21107.9O3—C9—H92108.4
C1—C2—H22107.9C1—C9—H91108.4
C3—C2—H21107.9C1—C9—H92108.4
C3—C2—H22107.9H91—C9—H92109.5
H21—C2—H22109.5
C2—C1—C6—C5−50.0 (3)C8—C1—C9—O3−58.2 (2)
C6—C1—C2—C344.7 (3)C9—C1—C8—O2−59.9 (2)
C2—C1—C8—O2−179.24 (16)C1—C2—C3—C4−19.9 (4)
C8—C1—C2—C3−76.9 (2)C1—C2—C3—C7161.0 (2)
C2—C1—C9—O361.0 (3)C2—C3—C4—C5−1.2 (4)
C9—C1—C2—C3164.0 (2)C7—C3—C4—C5177.8 (3)
C6—C1—C8—O259.8 (2)C3—C4—C5—O1176.3 (3)
C8—C1—C6—C570.6 (2)C3—C4—C5—C6−4.6 (4)
C6—C1—C9—O3−179.1 (2)O1—C5—C6—C1−149.4 (2)
C9—C1—C6—C5−169.7 (2)C4—C5—C6—C131.5 (3)
D—H···AD—HH···AD···AD—H···A
O2—H201···O3i0.921.852.738 (2)163
O3—H301···O2ii0.951.852.733 (2)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H201⋯O3i0.921.852.738 (2)163
O3—H301⋯O2ii0.951.842.733 (2)155

Symmetry codes: (i) ; (ii) .

  2 in total

1.  Jesterone and hydroxy-jesterone antioomycete cyclohexenone epoxides from the endophytic fungus Pestalotiopsis jesteri.

Authors:  J Y Li; G A Strobel
Journal:  Phytochemistry       Date:  2001-05       Impact factor: 4.072

2.  Synthesis and cytotoxicity of shikimate analogues. Structure:activity studies based on 1-crotonyloxymethyl-3R,4R,5R-trihydroxycyclohex-2-enone.

Authors:  O Aghil; M C Bibby; S J Carrington; J Double; K T Douglas; R M Phillips; T K Shing
Journal:  Anticancer Drug Des       Date:  1992-02
  2 in total

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