| Literature DB >> 21201725 |
Abstract
The title compound, C(12)H(16)N(2)S, was prepared by the reaction of with phenyl isothio-cyanate and piperidine. In the crystal structure, the mol-ecule exhibits inter-molecular N-H⋯S hydrogen bonds and weak intra-molecular C-H⋯S and C-H⋯N hydrogen-bonding inter-actions.Entities:
Year: 2008 PMID: 21201725 PMCID: PMC2960655 DOI: 10.1107/S1600536808025142
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H16N2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
| θ = 1.8–27.0º | |
| µ = 0.24 mm−1 | |
| β = 102.15 (3)º | Block, colourless |
| 0.25 × 0.20 × 0.18 mm | |
| Enraf–Nonius CAD-4 diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 27.0º |
| Monochromator: graphite | θmin = 1.8º |
| ω scans | |
| Absorption correction: none | |
| 2681 measured reflections | 3 standard reflections |
| 2547 independent reflections | every 100 reflections |
| 1972 reflections with | intensity decay: none |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| | |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.26 e Å−3 | |
| 2547 reflections | Δρmin = −0.38 e Å−3 |
| 149 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.129 (8) |
| Secondary atom site location: difference Fourier map |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.48254 (4) | 0.19137 (5) | 0.42566 (4) | 0.04595 (19) | |
| N1 | 0.33547 (12) | 0.37786 (15) | 0.29140 (15) | 0.0441 (4) | |
| N2 | 0.53031 (12) | 0.41101 (18) | 0.29001 (15) | 0.0465 (4) | |
| C1 | 0.23443 (15) | 0.2923 (2) | 0.3048 (2) | 0.0507 (5) | |
| H1A | 0.1878 | 0.3431 | 0.3537 | 0.061* | |
| H1B | 0.2615 | 0.2060 | 0.3484 | 0.061* | |
| C2 | 0.15982 (19) | 0.2580 (2) | 0.1783 (2) | 0.0655 (6) | |
| H2B | 0.0900 | 0.2083 | 0.1890 | 0.079* | |
| H2C | 0.2034 | 0.1966 | 0.1341 | 0.079* | |
| C3 | 0.1237 (2) | 0.3906 (2) | 0.1007 (3) | 0.0701 (7) | |
| H3A | 0.0837 | 0.3642 | 0.0173 | 0.084* | |
| H3B | 0.0696 | 0.4450 | 0.1377 | 0.084* | |
| C4 | 0.23033 (19) | 0.4800 (2) | 0.09364 (19) | 0.0558 (5) | |
| H4A | 0.2794 | 0.4308 | 0.0465 | 0.067* | |
| H4B | 0.2051 | 0.5676 | 0.0512 | 0.067* | |
| C5 | 0.29967 (16) | 0.51043 (19) | 0.22297 (19) | 0.0449 (4) | |
| C6 | 0.44703 (14) | 0.33344 (17) | 0.33069 (15) | 0.0362 (4) | |
| C7 | 0.65404 (14) | 0.39270 (17) | 0.32415 (16) | 0.0388 (4) | |
| C8 | 0.71647 (15) | 0.38347 (18) | 0.23028 (18) | 0.0439 (4) | |
| H8A | 0.6772 | 0.3841 | 0.1473 | 0.053* | |
| C9 | 0.83783 (16) | 0.3733 (2) | 0.2604 (2) | 0.0522 (5) | |
| H9A | 0.8797 | 0.3673 | 0.1973 | 0.063* | |
| C10 | 0.89689 (16) | 0.3721 (2) | 0.3832 (2) | 0.0538 (5) | |
| H10A | 0.9782 | 0.3646 | 0.4030 | 0.065* | |
| C11 | 0.83420 (16) | 0.3822 (2) | 0.4765 (2) | 0.0533 (5) | |
| H11A | 0.8737 | 0.3814 | 0.5594 | 0.064* | |
| C12 | 0.71314 (16) | 0.3935 (2) | 0.44777 (18) | 0.0481 (4) | |
| H12A | 0.6716 | 0.4015 | 0.5110 | 0.058* | |
| H5A | 0.3633 (19) | 0.566 (2) | 0.220 (2) | 0.055 (6)* | |
| H5B | 0.2457 (19) | 0.561 (2) | 0.267 (2) | 0.056 (6)* | |
| H2 | 0.5075 (17) | 0.463 (2) | 0.230 (2) | 0.051 (6)* |
| S1 | 0.0424 (3) | 0.0424 (3) | 0.0520 (3) | 0.00420 (18) | 0.00770 (19) | 0.01026 (19) |
| N1 | 0.0343 (7) | 0.0404 (8) | 0.0576 (9) | −0.0006 (6) | 0.0095 (6) | 0.0122 (7) |
| N2 | 0.0336 (7) | 0.0551 (9) | 0.0494 (9) | −0.0004 (7) | 0.0058 (6) | 0.0162 (7) |
| C1 | 0.0344 (9) | 0.0481 (10) | 0.0717 (13) | 0.0002 (7) | 0.0158 (8) | 0.0176 (9) |
| C2 | 0.0502 (11) | 0.0419 (11) | 0.0962 (17) | −0.0057 (9) | −0.0033 (11) | 0.0036 (11) |
| C3 | 0.0613 (13) | 0.0556 (13) | 0.0792 (16) | −0.0016 (10) | −0.0179 (11) | 0.0042 (11) |
| C4 | 0.0655 (12) | 0.0503 (11) | 0.0525 (11) | 0.0128 (9) | 0.0142 (9) | 0.0097 (9) |
| C5 | 0.0370 (8) | 0.0355 (9) | 0.0631 (12) | 0.0021 (7) | 0.0124 (8) | 0.0092 (8) |
| C6 | 0.0351 (8) | 0.0369 (8) | 0.0367 (8) | −0.0014 (6) | 0.0078 (6) | −0.0016 (6) |
| C7 | 0.0335 (8) | 0.0343 (8) | 0.0475 (9) | −0.0029 (6) | 0.0059 (7) | 0.0017 (7) |
| C8 | 0.0418 (9) | 0.0420 (10) | 0.0474 (10) | −0.0041 (7) | 0.0081 (7) | 0.0007 (7) |
| C9 | 0.0434 (10) | 0.0475 (11) | 0.0706 (13) | −0.0022 (8) | 0.0233 (9) | −0.0035 (9) |
| C10 | 0.0320 (9) | 0.0451 (10) | 0.0814 (14) | −0.0008 (7) | 0.0052 (9) | 0.0032 (9) |
| C11 | 0.0435 (10) | 0.0539 (12) | 0.0556 (11) | −0.0051 (8) | −0.0054 (8) | 0.0008 (9) |
| C12 | 0.0428 (9) | 0.0536 (11) | 0.0466 (10) | −0.0036 (8) | 0.0066 (8) | −0.0027 (8) |
| S1—C6 | 1.7056 (17) | C4—C5 | 1.508 (3) |
| N1—C6 | 1.349 (2) | C4—H4A | 0.9700 |
| N1—C1 | 1.465 (2) | C4—H4B | 0.9700 |
| N1—C5 | 1.484 (2) | C5—H5A | 0.92 (2) |
| N2—C6 | 1.368 (2) | C5—H5B | 0.99 (2) |
| N2—C7 | 1.423 (2) | C7—C8 | 1.385 (3) |
| N2—H2 | 0.82 (2) | C7—C12 | 1.388 (2) |
| C1—C2 | 1.512 (3) | C8—C9 | 1.387 (3) |
| C1—H1A | 0.9700 | C8—H8A | 0.9300 |
| C1—H1B | 0.9700 | C9—C10 | 1.380 (3) |
| C2—C3 | 1.533 (3) | C9—H9A | 0.9300 |
| C2—H2B | 0.9700 | C10—C11 | 1.383 (3) |
| C2—H2C | 0.9700 | C10—H10A | 0.9300 |
| C3—C4 | 1.522 (3) | C11—C12 | 1.384 (3) |
| C3—H3A | 0.9700 | C11—H11A | 0.9300 |
| C3—H3B | 0.9700 | C12—H12A | 0.9300 |
| C6—N1—C1 | 122.35 (14) | H4A—C4—H4B | 108.2 |
| C6—N1—C5 | 125.33 (14) | N1—C5—C4 | 110.63 (16) |
| C1—N1—C5 | 112.18 (14) | N1—C5—H5A | 111.5 (13) |
| C6—N2—C7 | 126.72 (15) | C4—C5—H5A | 110.9 (13) |
| C6—N2—H2 | 117.1 (14) | N1—C5—H5B | 107.9 (13) |
| C7—N2—H2 | 115.0 (14) | C4—C5—H5B | 106.3 (12) |
| N1—C1—C2 | 110.30 (17) | H5A—C5—H5B | 109.3 (18) |
| N1—C1—H1A | 109.6 | N1—C6—N2 | 115.41 (15) |
| C2—C1—H1A | 109.6 | N1—C6—S1 | 122.54 (12) |
| N1—C1—H1B | 109.6 | N2—C6—S1 | 122.05 (12) |
| C2—C1—H1B | 109.6 | C8—C7—C12 | 119.93 (16) |
| H1A—C1—H1B | 108.1 | C8—C7—N2 | 118.31 (16) |
| C1—C2—C3 | 111.80 (18) | C12—C7—N2 | 121.62 (16) |
| C1—C2—H2B | 109.3 | C7—C8—C9 | 119.78 (18) |
| C3—C2—H2B | 109.3 | C7—C8—H8A | 120.1 |
| C1—C2—H2C | 109.3 | C9—C8—H8A | 120.1 |
| C3—C2—H2C | 109.3 | C10—C9—C8 | 120.50 (19) |
| H2B—C2—H2C | 107.9 | C10—C9—H9A | 119.7 |
| C4—C3—C2 | 110.95 (18) | C8—C9—H9A | 119.7 |
| C4—C3—H3A | 109.4 | C9—C10—C11 | 119.48 (17) |
| C2—C3—H3A | 109.4 | C9—C10—H10A | 120.3 |
| C4—C3—H3B | 109.4 | C11—C10—H10A | 120.3 |
| C2—C3—H3B | 109.4 | C10—C11—C12 | 120.59 (18) |
| H3A—C3—H3B | 108.0 | C10—C11—H11A | 119.7 |
| C5—C4—C3 | 109.95 (18) | C12—C11—H11A | 119.7 |
| C5—C4—H4A | 109.7 | C11—C12—C7 | 119.70 (18) |
| C3—C4—H4A | 109.7 | C11—C12—H12A | 120.1 |
| C5—C4—H4B | 109.7 | C7—C12—H12A | 120.1 |
| C3—C4—H4B | 109.7 | ||
| C6—N1—C1—C2 | −117.8 (2) | C7—N2—C6—N1 | 175.49 (17) |
| C5—N1—C1—C2 | 58.1 (2) | C7—N2—C6—S1 | −3.9 (3) |
| N1—C1—C2—C3 | −54.1 (2) | C6—N2—C7—C8 | 129.22 (19) |
| C1—C2—C3—C4 | 52.7 (3) | C6—N2—C7—C12 | −55.1 (3) |
| C2—C3—C4—C5 | −53.8 (3) | C12—C7—C8—C9 | 0.8 (3) |
| C6—N1—C5—C4 | 115.4 (2) | N2—C7—C8—C9 | 176.49 (16) |
| C1—N1—C5—C4 | −60.4 (2) | C7—C8—C9—C10 | 0.1 (3) |
| C3—C4—C5—N1 | 57.2 (2) | C8—C9—C10—C11 | −0.5 (3) |
| C1—N1—C6—N2 | 167.41 (17) | C9—C10—C11—C12 | 0.0 (3) |
| C5—N1—C6—N2 | −8.0 (3) | C10—C11—C12—C7 | 0.9 (3) |
| C1—N1—C6—S1 | −13.2 (2) | C8—C7—C12—C11 | −1.3 (3) |
| C5—N1—C6—S1 | 171.48 (14) | N2—C7—C12—C11 | −176.82 (17) |
| H··· | ||||
| N2—H2···S1i | 0.82 (2) | 2.78 (2) | 3.5520 (19) | 156.1 (18) |
| C1—H1B···S1 | 0.97 | 2.54 | 3.073 (2) | 114 |
| C5—H5A···N2 | 0.92 (2) | 2.44 (2) | 2.800 (2) | 103.8 (14) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯S1i | 0.82 (2) | 2.78 (2) | 3.5520 (19) | 156.1 (18) |
| C1—H1 | 0.97 | 2.54 | 3.073 (2) | 114 |
| C5—H5 | 0.92 (2) | 2.44 (2) | 2.800 (2) | 103.8 (14) |
Symmetry code: (i) .