Literature DB >> 21201723

1',5-Dinitro-2'-phenyl-2',3',5',6',7',7a'-hexa-hydro-spiro-[indoline-3,3'-1'H-pyrrolizin]-2-one.

Yaghoub Sarrafi1, Kamal Alimohammadi.   

Abstract

In the title cyclo-adduct, C(20)H(18)N(4)O(5), the rings of the pyrrolizine system adopt envelope conformations. A centrosymmetric dimer is formed via inter-molecular N-H⋯O hydrogen bonds between the indolinone rings.

Entities:  

Year:  2008        PMID: 21201723      PMCID: PMC2960711          DOI: 10.1107/S1600536808025038

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: De March et al. (2002 ▶); Fejes et al. (2001 ▶); Karthikeyan et al. (2007 ▶); Usha et al. (2005a ▶,b ▶); Liddell (1998 ▶); Michael (1997 ▶).

Experimental

Crystal data

C20H18N4O5 M = 394.38 Monoclinic, a = 13.998 (4) Å b = 7.963 (3) Å c = 16.359 (6) Å β = 99.695 (11)° V = 1797.5 (10) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 120 (2) K 0.26 × 0.18 × 0.12 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: none 13372 measured reflections 4316 independent reflections 2227 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.114 S = 1.00 4316 reflections 262 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808025038/om2253sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808025038/om2253Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H18N4O5F000 = 824
Mr = 394.38Dx = 1.457 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 438 reflections
a = 13.998 (4) Åθ = 2.1–19.3º
b = 7.963 (3) ŵ = 0.11 mm1
c = 16.359 (6) ÅT = 120 (2) K
β = 99.695 (11)ºPrism, yellow
V = 1797.5 (10) Å30.26 × 0.18 × 0.12 mm
Z = 4
Bruker SMART 1000 CCD area-detector diffractometer2227 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.044
Monochromator: graphiteθmax = 28.0º
T = 120(2) Kθmin = 2.5º
φ and ω scansh = −17→18
Absorption correction: nonek = −10→10
13372 measured reflectionsl = −21→21
4316 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.114  w = 1/[σ2(Fo2) + (0.02P)2 + 1.3P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
4316 reflectionsΔρmax = 0.31 e Å3
262 parametersΔρmin = −0.25 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. A mixture of 5-nitroisatin (0.192 g, 1 mmol), proline (0.115 g, 1 mmol), and trans-β-nitrostyrene (0.149 g, 1 mmol) in ethanol (10 ml) was stirred at refluxed for 1 h. After completion of the reaction, as indicated by TLC, to solution was added water (25 ml) and the precipitated solid was separated by filtration. The pure cycloadduct was obtained by recrystallization from ethanol.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.42737 (11)0.8306 (2)0.53311 (9)0.0310 (4)
O2−0.02802 (13)1.0541 (3)0.22715 (12)0.0518 (5)
O30.03964 (13)1.2271 (2)0.15286 (11)0.0449 (5)
O40.27784 (16)0.2753 (2)0.54074 (12)0.0596 (6)
O50.17142 (13)0.3390 (2)0.43381 (11)0.0441 (5)
N10.39099 (13)1.0143 (2)0.42331 (11)0.0271 (5)
H1A0.44651.06250.42660.033*
N20.21896 (13)0.8303 (2)0.52112 (11)0.0276 (5)
N30.04377 (16)1.1279 (3)0.21107 (13)0.0366 (5)
N40.23870 (16)0.3752 (3)0.48895 (13)0.0360 (5)
C10.37153 (16)0.8895 (3)0.47458 (14)0.0260 (5)
C20.26499 (15)0.8336 (3)0.44673 (13)0.0240 (5)
C30.23048 (16)0.9555 (3)0.37701 (13)0.0247 (5)
C40.14310 (17)0.9760 (3)0.32541 (13)0.0277 (5)
H4A0.08960.91100.33150.033*
C50.13764 (17)1.0973 (3)0.26379 (14)0.0283 (6)
C60.21565 (18)1.1911 (3)0.24975 (15)0.0325 (6)
H6A0.20901.26810.20640.039*
C70.30444 (17)1.1698 (3)0.30081 (14)0.0304 (6)
H7A0.35861.23090.29240.036*
C80.30976 (16)1.0547 (3)0.36449 (13)0.0244 (5)
C90.12231 (17)0.9058 (3)0.52006 (15)0.0346 (6)
H9A0.08750.91540.46380.042*
H9B0.12791.01640.54530.042*
C100.07094 (18)0.7847 (3)0.57053 (16)0.0373 (6)
H10A0.08810.80640.62950.045*
H10B0.00110.79110.55440.045*
C110.10985 (18)0.6159 (3)0.54746 (17)0.0383 (6)
H11A0.09990.52930.58680.046*
H11B0.08010.58140.49220.046*
C120.21678 (17)0.6552 (3)0.55171 (14)0.0296 (6)
H12A0.24970.64970.60950.036*
C130.27408 (17)0.5532 (3)0.49667 (14)0.0297 (6)
H13A0.34290.55400.52150.036*
C140.26082 (16)0.6474 (3)0.41508 (13)0.0256 (5)
H14A0.19450.62640.38670.031*
C150.32836 (17)0.6039 (3)0.35484 (14)0.0272 (5)
C160.42558 (18)0.5628 (3)0.38008 (15)0.0371 (6)
H16A0.45130.56180.43630.044*
C170.48456 (19)0.5237 (3)0.32300 (16)0.0417 (7)
H17A0.54930.49690.34110.050*
C180.44760 (19)0.5243 (3)0.23930 (15)0.0387 (6)
H18A0.48700.49600.20100.046*
C190.35159 (19)0.5672 (3)0.21255 (15)0.0359 (6)
H19A0.32660.57020.15620.043*
C200.29304 (18)0.6057 (3)0.27026 (14)0.0311 (6)
H20A0.22850.63350.25190.037*
U11U22U33U12U13U23
O10.0260 (9)0.0382 (10)0.0268 (9)−0.0038 (8)−0.0010 (7)0.0041 (8)
O20.0293 (11)0.0701 (15)0.0526 (12)0.0004 (10)−0.0030 (9)0.0051 (10)
O30.0505 (12)0.0470 (11)0.0340 (11)0.0179 (10)−0.0023 (9)0.0041 (9)
O40.0802 (16)0.0409 (12)0.0554 (13)0.0026 (11)0.0053 (11)0.0165 (10)
O50.0453 (12)0.0390 (11)0.0477 (12)−0.0096 (9)0.0067 (10)−0.0070 (9)
N10.0195 (10)0.0318 (11)0.0292 (10)−0.0042 (9)0.0018 (8)0.0027 (9)
N20.0246 (11)0.0306 (11)0.0281 (11)−0.0027 (9)0.0060 (8)−0.0001 (9)
N30.0357 (13)0.0423 (13)0.0299 (12)0.0116 (11)−0.0001 (10)−0.0051 (10)
N40.0405 (13)0.0319 (12)0.0369 (13)−0.0016 (11)0.0105 (11)0.0010 (10)
C10.0254 (13)0.0306 (13)0.0226 (12)0.0000 (11)0.0056 (10)−0.0012 (10)
C20.0192 (12)0.0285 (13)0.0243 (12)−0.0016 (10)0.0037 (9)−0.0010 (10)
C30.0234 (12)0.0260 (12)0.0246 (12)0.0010 (10)0.0033 (10)−0.0023 (10)
C40.0261 (13)0.0287 (13)0.0282 (13)−0.0024 (11)0.0039 (10)−0.0048 (10)
C50.0254 (13)0.0328 (13)0.0243 (12)0.0068 (11)−0.0023 (10)−0.0042 (10)
C60.0379 (15)0.0292 (14)0.0294 (13)0.0040 (12)0.0028 (11)0.0026 (11)
C70.0283 (13)0.0313 (13)0.0315 (13)−0.0008 (11)0.0051 (11)0.0013 (11)
C80.0239 (13)0.0244 (12)0.0241 (12)0.0011 (10)0.0016 (10)−0.0040 (10)
C90.0328 (14)0.0361 (15)0.0370 (15)0.0037 (12)0.0116 (12)−0.0014 (12)
C100.0324 (14)0.0451 (16)0.0360 (15)0.0002 (13)0.0099 (12)−0.0006 (12)
C110.0349 (15)0.0368 (15)0.0457 (16)−0.0088 (12)0.0141 (12)0.0021 (12)
C120.0322 (14)0.0326 (14)0.0243 (12)−0.0009 (11)0.0057 (10)0.0022 (10)
C130.0281 (13)0.0275 (13)0.0340 (14)−0.0035 (11)0.0062 (11)−0.0013 (11)
C140.0227 (12)0.0287 (13)0.0250 (12)−0.0018 (10)0.0029 (10)−0.0012 (10)
C150.0263 (13)0.0256 (12)0.0304 (13)−0.0023 (11)0.0072 (10)0.0010 (10)
C160.0297 (14)0.0531 (17)0.0275 (13)0.0015 (13)0.0021 (11)−0.0005 (12)
C170.0239 (14)0.0599 (19)0.0413 (16)0.0031 (13)0.0054 (12)−0.0014 (14)
C180.0427 (17)0.0420 (16)0.0351 (15)0.0024 (13)0.0171 (13)0.0005 (12)
C190.0437 (16)0.0397 (15)0.0241 (13)0.0025 (13)0.0049 (12)0.0081 (11)
C200.0317 (14)0.0287 (13)0.0316 (14)0.0051 (11)0.0018 (11)0.0029 (11)
O1—C11.223 (2)C9—H9A0.9700
O2—N31.230 (3)C9—H9B0.9700
O3—N31.232 (3)C10—C111.521 (3)
O4—N41.223 (3)C10—H10A0.9700
O5—N41.224 (2)C10—H10B0.9700
N1—C11.357 (3)C11—C121.519 (3)
N1—C81.398 (3)C11—H11A0.9700
N1—H1A0.8600C11—H11B0.9700
N2—C21.470 (3)C12—C131.535 (3)
N2—C91.478 (3)C12—H12A0.9800
N2—C121.483 (3)C13—C141.515 (3)
N3—C51.466 (3)C13—H13A0.9800
N4—C131.500 (3)C14—C151.516 (3)
C1—C21.550 (3)C14—H14A0.9800
C2—C31.513 (3)C15—C201.389 (3)
C2—C141.568 (3)C15—C161.393 (3)
C3—C41.374 (3)C16—C171.382 (3)
C3—C81.405 (3)C16—H16A0.9300
C4—C51.389 (3)C17—C181.380 (3)
C4—H4A0.9300C17—H17A0.9300
C5—C61.374 (3)C18—C191.384 (3)
C6—C71.386 (3)C18—H18A0.9300
C6—H6A0.9300C19—C201.385 (3)
C7—C81.380 (3)C19—H19A0.9300
C7—H7A0.9300C20—H20A0.9300
C9—C101.526 (3)
C1—N1—C8111.68 (19)C9—C10—H10A111.4
C1—N1—H1A124.2C11—C10—H10B111.4
C8—N1—H1A124.2C9—C10—H10B111.4
C2—N2—C9120.73 (18)H10A—C10—H10B109.3
C2—N2—C12109.45 (18)C12—C11—C10101.42 (19)
C9—N2—C12108.40 (18)C12—C11—H11A111.5
O2—N3—O3122.6 (2)C10—C11—H11A111.5
O2—N3—C5118.6 (2)C12—C11—H11B111.5
O3—N3—C5118.8 (2)C10—C11—H11B111.5
O4—N4—O5123.8 (2)H11A—C11—H11B109.3
O4—N4—C13117.0 (2)N2—C12—C11104.72 (19)
O5—N4—C13119.1 (2)N2—C12—C13104.90 (18)
O1—C1—N1126.6 (2)C11—C12—C13118.2 (2)
O1—C1—C2125.2 (2)N2—C12—H12A109.5
N1—C1—C2108.18 (19)C11—C12—H12A109.5
N2—C2—C3120.44 (19)C13—C12—H12A109.5
N2—C2—C1107.23 (17)N4—C13—C14113.83 (19)
C3—C2—C1101.93 (18)N4—C13—C12110.60 (19)
N2—C2—C14105.01 (17)C14—C13—C12104.84 (19)
C3—C2—C14111.59 (18)N4—C13—H13A109.1
C1—C2—C14110.43 (18)C14—C13—H13A109.1
C4—C3—C8119.1 (2)C12—C13—H13A109.1
C4—C3—C2132.6 (2)C13—C14—C15117.51 (19)
C8—C3—C2108.11 (18)C13—C14—C2100.67 (17)
C3—C4—C5117.6 (2)C15—C14—C2116.00 (18)
C3—C4—H4A121.2C13—C14—H14A107.3
C5—C4—H4A121.2C15—C14—H14A107.3
C6—C5—C4123.5 (2)C2—C14—H14A107.3
C6—C5—N3118.1 (2)C20—C15—C16117.6 (2)
C4—C5—N3118.5 (2)C20—C15—C14119.3 (2)
C5—C6—C7119.3 (2)C16—C15—C14123.1 (2)
C5—C6—H6A120.3C17—C16—C15121.2 (2)
C7—C6—H6A120.3C17—C16—H16A119.4
C8—C7—C6117.7 (2)C15—C16—H16A119.4
C8—C7—H7A121.1C18—C17—C16120.2 (2)
C6—C7—H7A121.1C18—C17—H17A119.9
C7—C8—N1127.4 (2)C16—C17—H17A119.9
C7—C8—C3122.7 (2)C17—C18—C19119.8 (2)
N1—C8—C3109.93 (19)C17—C18—H18A120.1
N2—C9—C10104.50 (19)C19—C18—H18A120.1
N2—C9—H9A110.9C18—C19—C20119.6 (2)
C10—C9—H9A110.9C18—C19—H19A120.2
N2—C9—H9B110.9C20—C19—H19A120.2
C10—C9—H9B110.9C19—C20—C15121.6 (2)
H9A—C9—H9B108.9C19—C20—H20A119.2
C11—C10—C9101.72 (19)C15—C20—H20A119.2
C11—C10—H10A111.4
C8—N1—C1—O1−178.1 (2)C12—N2—C9—C1013.3 (2)
C8—N1—C1—C21.6 (2)N2—C9—C10—C11−35.4 (2)
C9—N2—C2—C318.2 (3)C9—C10—C11—C1243.5 (2)
C12—N2—C2—C3145.0 (2)C2—N2—C12—C11−119.4 (2)
C9—N2—C2—C1133.9 (2)C9—N2—C12—C1114.2 (2)
C12—N2—C2—C1−99.3 (2)C2—N2—C12—C135.8 (2)
C9—N2—C2—C14−108.6 (2)C9—N2—C12—C13139.27 (19)
C12—N2—C2—C1418.2 (2)C10—C11—C12—N2−35.9 (2)
O1—C1—C2—N248.8 (3)C10—C11—C12—C13−152.1 (2)
N1—C1—C2—N2−130.89 (19)O4—N4—C13—C14152.6 (2)
O1—C1—C2—C3176.2 (2)O5—N4—C13—C14−29.7 (3)
N1—C1—C2—C3−3.5 (2)O4—N4—C13—C12−89.7 (3)
O1—C1—C2—C14−65.1 (3)O5—N4—C13—C1288.1 (3)
N1—C1—C2—C14115.2 (2)N2—C12—C13—N4−151.47 (18)
N2—C2—C3—C4−61.6 (3)C11—C12—C13—N4−35.3 (3)
C1—C2—C3—C4180.0 (2)N2—C12—C13—C14−28.4 (2)
C14—C2—C3—C462.1 (3)C11—C12—C13—C1487.8 (2)
N2—C2—C3—C8122.5 (2)N4—C13—C14—C15−73.9 (3)
C1—C2—C3—C84.1 (2)C12—C13—C14—C15165.08 (19)
C14—C2—C3—C8−113.7 (2)N4—C13—C14—C2159.14 (19)
C8—C3—C4—C5−1.1 (3)C12—C13—C14—C238.1 (2)
C2—C3—C4—C5−176.5 (2)N2—C2—C14—C13−34.7 (2)
C3—C4—C5—C63.1 (3)C3—C2—C14—C13−166.78 (18)
C3—C4—C5—N3−176.6 (2)C1—C2—C14—C1380.6 (2)
O2—N3—C5—C6−174.4 (2)N2—C2—C14—C15−162.62 (18)
O3—N3—C5—C65.0 (3)C3—C2—C14—C1565.3 (2)
O2—N3—C5—C45.3 (3)C1—C2—C14—C15−47.3 (2)
O3—N3—C5—C4−175.2 (2)C13—C14—C15—C20144.2 (2)
C4—C5—C6—C7−2.3 (4)C2—C14—C15—C20−96.7 (2)
N3—C5—C6—C7177.4 (2)C13—C14—C15—C16−36.4 (3)
C5—C6—C7—C8−0.5 (3)C2—C14—C15—C1682.7 (3)
C6—C7—C8—N1−179.5 (2)C20—C15—C16—C17−0.6 (4)
C6—C7—C8—C32.5 (3)C14—C15—C16—C17179.9 (2)
C1—N1—C8—C7−177.0 (2)C15—C16—C17—C18−0.2 (4)
C1—N1—C8—C31.2 (3)C16—C17—C18—C191.2 (4)
C4—C3—C8—C7−1.7 (3)C17—C18—C19—C20−1.4 (4)
C2—C3—C8—C7174.8 (2)C18—C19—C20—C150.6 (4)
C4—C3—C8—N1180.0 (2)C16—C15—C20—C190.4 (4)
C2—C3—C8—N1−3.5 (2)C14—C15—C20—C19179.9 (2)
C2—N2—C9—C10140.7 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.861.972.808 (2)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.861.972.808 (2)164

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Pyrrolizidine alkaloids.

Authors:  J R Liddel
Journal:  Nat Prod Rep       Date:  1998-08       Impact factor: 13.423

Review 3.  Indolizidine and quinolizidine alkaloids.

Authors:  J P Michael
Journal:  Nat Prod Rep       Date:  1997-12       Impact factor: 13.423

  3 in total

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