| Literature DB >> 21201723 |
Yaghoub Sarrafi1, Kamal Alimohammadi.
Abstract
In the title cyclo-adduct, C(20)H(18)N(4)O(5), the rings of the pyrrolizine system adopt envelope conformations. A centrosymmetric dimer is formed via inter-molecular N-H⋯O hydrogen bonds between the indolinone rings.Entities:
Year: 2008 PMID: 21201723 PMCID: PMC2960711 DOI: 10.1107/S1600536808025038
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H18N4O5 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 438 reflections |
| θ = 2.1–19.3º | |
| µ = 0.11 mm−1 | |
| β = 99.695 (11)º | Prism, yellow |
| 0.26 × 0.18 × 0.12 mm | |
| Bruker SMART 1000 CCD area-detector diffractometer | 2227 reflections with |
| Radiation source: fine-focus sealed tube | |
| Monochromator: graphite | θmax = 28.0º |
| θmin = 2.5º | |
| φ and ω scans | |
| Absorption correction: none | |
| 13372 measured reflections | |
| 4316 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 4316 reflections | Δρmax = 0.31 e Å−3 |
| 262 parameters | Δρmin = −0.25 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Experimental. A mixture of 5-nitroisatin (0.192 g, 1 mmol), proline (0.115 g, 1 mmol), and
|
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.42737 (11) | 0.8306 (2) | 0.53311 (9) | 0.0310 (4) | |
| O2 | −0.02802 (13) | 1.0541 (3) | 0.22715 (12) | 0.0518 (5) | |
| O3 | 0.03964 (13) | 1.2271 (2) | 0.15286 (11) | 0.0449 (5) | |
| O4 | 0.27784 (16) | 0.2753 (2) | 0.54074 (12) | 0.0596 (6) | |
| O5 | 0.17142 (13) | 0.3390 (2) | 0.43381 (11) | 0.0441 (5) | |
| N1 | 0.39099 (13) | 1.0143 (2) | 0.42331 (11) | 0.0271 (5) | |
| H1A | 0.4465 | 1.0625 | 0.4266 | 0.033* | |
| N2 | 0.21896 (13) | 0.8303 (2) | 0.52112 (11) | 0.0276 (5) | |
| N3 | 0.04377 (16) | 1.1279 (3) | 0.21107 (13) | 0.0366 (5) | |
| N4 | 0.23870 (16) | 0.3752 (3) | 0.48895 (13) | 0.0360 (5) | |
| C1 | 0.37153 (16) | 0.8895 (3) | 0.47458 (14) | 0.0260 (5) | |
| C2 | 0.26499 (15) | 0.8336 (3) | 0.44673 (13) | 0.0240 (5) | |
| C3 | 0.23048 (16) | 0.9555 (3) | 0.37701 (13) | 0.0247 (5) | |
| C4 | 0.14310 (17) | 0.9760 (3) | 0.32541 (13) | 0.0277 (5) | |
| H4A | 0.0896 | 0.9110 | 0.3315 | 0.033* | |
| C5 | 0.13764 (17) | 1.0973 (3) | 0.26379 (14) | 0.0283 (6) | |
| C6 | 0.21565 (18) | 1.1911 (3) | 0.24975 (15) | 0.0325 (6) | |
| H6A | 0.2090 | 1.2681 | 0.2064 | 0.039* | |
| C7 | 0.30444 (17) | 1.1698 (3) | 0.30081 (14) | 0.0304 (6) | |
| H7A | 0.3586 | 1.2309 | 0.2924 | 0.036* | |
| C8 | 0.30976 (16) | 1.0547 (3) | 0.36449 (13) | 0.0244 (5) | |
| C9 | 0.12231 (17) | 0.9058 (3) | 0.52006 (15) | 0.0346 (6) | |
| H9A | 0.0875 | 0.9154 | 0.4638 | 0.042* | |
| H9B | 0.1279 | 1.0164 | 0.5453 | 0.042* | |
| C10 | 0.07094 (18) | 0.7847 (3) | 0.57053 (16) | 0.0373 (6) | |
| H10A | 0.0881 | 0.8064 | 0.6295 | 0.045* | |
| H10B | 0.0011 | 0.7911 | 0.5544 | 0.045* | |
| C11 | 0.10985 (18) | 0.6159 (3) | 0.54746 (17) | 0.0383 (6) | |
| H11A | 0.0999 | 0.5293 | 0.5868 | 0.046* | |
| H11B | 0.0801 | 0.5814 | 0.4922 | 0.046* | |
| C12 | 0.21678 (17) | 0.6552 (3) | 0.55171 (14) | 0.0296 (6) | |
| H12A | 0.2497 | 0.6497 | 0.6095 | 0.036* | |
| C13 | 0.27408 (17) | 0.5532 (3) | 0.49667 (14) | 0.0297 (6) | |
| H13A | 0.3429 | 0.5540 | 0.5215 | 0.036* | |
| C14 | 0.26082 (16) | 0.6474 (3) | 0.41508 (13) | 0.0256 (5) | |
| H14A | 0.1945 | 0.6264 | 0.3867 | 0.031* | |
| C15 | 0.32836 (17) | 0.6039 (3) | 0.35484 (14) | 0.0272 (5) | |
| C16 | 0.42558 (18) | 0.5628 (3) | 0.38008 (15) | 0.0371 (6) | |
| H16A | 0.4513 | 0.5618 | 0.4363 | 0.044* | |
| C17 | 0.48456 (19) | 0.5237 (3) | 0.32300 (16) | 0.0417 (7) | |
| H17A | 0.5493 | 0.4969 | 0.3411 | 0.050* | |
| C18 | 0.44760 (19) | 0.5243 (3) | 0.23930 (15) | 0.0387 (6) | |
| H18A | 0.4870 | 0.4960 | 0.2010 | 0.046* | |
| C19 | 0.35159 (19) | 0.5672 (3) | 0.21255 (15) | 0.0359 (6) | |
| H19A | 0.3266 | 0.5702 | 0.1562 | 0.043* | |
| C20 | 0.29304 (18) | 0.6057 (3) | 0.27026 (14) | 0.0311 (6) | |
| H20A | 0.2285 | 0.6335 | 0.2519 | 0.037* |
| O1 | 0.0260 (9) | 0.0382 (10) | 0.0268 (9) | −0.0038 (8) | −0.0010 (7) | 0.0041 (8) |
| O2 | 0.0293 (11) | 0.0701 (15) | 0.0526 (12) | 0.0004 (10) | −0.0030 (9) | 0.0051 (10) |
| O3 | 0.0505 (12) | 0.0470 (11) | 0.0340 (11) | 0.0179 (10) | −0.0023 (9) | 0.0041 (9) |
| O4 | 0.0802 (16) | 0.0409 (12) | 0.0554 (13) | 0.0026 (11) | 0.0053 (11) | 0.0165 (10) |
| O5 | 0.0453 (12) | 0.0390 (11) | 0.0477 (12) | −0.0096 (9) | 0.0067 (10) | −0.0070 (9) |
| N1 | 0.0195 (10) | 0.0318 (11) | 0.0292 (10) | −0.0042 (9) | 0.0018 (8) | 0.0027 (9) |
| N2 | 0.0246 (11) | 0.0306 (11) | 0.0281 (11) | −0.0027 (9) | 0.0060 (8) | −0.0001 (9) |
| N3 | 0.0357 (13) | 0.0423 (13) | 0.0299 (12) | 0.0116 (11) | −0.0001 (10) | −0.0051 (10) |
| N4 | 0.0405 (13) | 0.0319 (12) | 0.0369 (13) | −0.0016 (11) | 0.0105 (11) | 0.0010 (10) |
| C1 | 0.0254 (13) | 0.0306 (13) | 0.0226 (12) | 0.0000 (11) | 0.0056 (10) | −0.0012 (10) |
| C2 | 0.0192 (12) | 0.0285 (13) | 0.0243 (12) | −0.0016 (10) | 0.0037 (9) | −0.0010 (10) |
| C3 | 0.0234 (12) | 0.0260 (12) | 0.0246 (12) | 0.0010 (10) | 0.0033 (10) | −0.0023 (10) |
| C4 | 0.0261 (13) | 0.0287 (13) | 0.0282 (13) | −0.0024 (11) | 0.0039 (10) | −0.0048 (10) |
| C5 | 0.0254 (13) | 0.0328 (13) | 0.0243 (12) | 0.0068 (11) | −0.0023 (10) | −0.0042 (10) |
| C6 | 0.0379 (15) | 0.0292 (14) | 0.0294 (13) | 0.0040 (12) | 0.0028 (11) | 0.0026 (11) |
| C7 | 0.0283 (13) | 0.0313 (13) | 0.0315 (13) | −0.0008 (11) | 0.0051 (11) | 0.0013 (11) |
| C8 | 0.0239 (13) | 0.0244 (12) | 0.0241 (12) | 0.0011 (10) | 0.0016 (10) | −0.0040 (10) |
| C9 | 0.0328 (14) | 0.0361 (15) | 0.0370 (15) | 0.0037 (12) | 0.0116 (12) | −0.0014 (12) |
| C10 | 0.0324 (14) | 0.0451 (16) | 0.0360 (15) | 0.0002 (13) | 0.0099 (12) | −0.0006 (12) |
| C11 | 0.0349 (15) | 0.0368 (15) | 0.0457 (16) | −0.0088 (12) | 0.0141 (12) | 0.0021 (12) |
| C12 | 0.0322 (14) | 0.0326 (14) | 0.0243 (12) | −0.0009 (11) | 0.0057 (10) | 0.0022 (10) |
| C13 | 0.0281 (13) | 0.0275 (13) | 0.0340 (14) | −0.0035 (11) | 0.0062 (11) | −0.0013 (11) |
| C14 | 0.0227 (12) | 0.0287 (13) | 0.0250 (12) | −0.0018 (10) | 0.0029 (10) | −0.0012 (10) |
| C15 | 0.0263 (13) | 0.0256 (12) | 0.0304 (13) | −0.0023 (11) | 0.0072 (10) | 0.0010 (10) |
| C16 | 0.0297 (14) | 0.0531 (17) | 0.0275 (13) | 0.0015 (13) | 0.0021 (11) | −0.0005 (12) |
| C17 | 0.0239 (14) | 0.0599 (19) | 0.0413 (16) | 0.0031 (13) | 0.0054 (12) | −0.0014 (14) |
| C18 | 0.0427 (17) | 0.0420 (16) | 0.0351 (15) | 0.0024 (13) | 0.0171 (13) | 0.0005 (12) |
| C19 | 0.0437 (16) | 0.0397 (15) | 0.0241 (13) | 0.0025 (13) | 0.0049 (12) | 0.0081 (11) |
| C20 | 0.0317 (14) | 0.0287 (13) | 0.0316 (14) | 0.0051 (11) | 0.0018 (11) | 0.0029 (11) |
| O1—C1 | 1.223 (2) | C9—H9A | 0.9700 |
| O2—N3 | 1.230 (3) | C9—H9B | 0.9700 |
| O3—N3 | 1.232 (3) | C10—C11 | 1.521 (3) |
| O4—N4 | 1.223 (3) | C10—H10A | 0.9700 |
| O5—N4 | 1.224 (2) | C10—H10B | 0.9700 |
| N1—C1 | 1.357 (3) | C11—C12 | 1.519 (3) |
| N1—C8 | 1.398 (3) | C11—H11A | 0.9700 |
| N1—H1A | 0.8600 | C11—H11B | 0.9700 |
| N2—C2 | 1.470 (3) | C12—C13 | 1.535 (3) |
| N2—C9 | 1.478 (3) | C12—H12A | 0.9800 |
| N2—C12 | 1.483 (3) | C13—C14 | 1.515 (3) |
| N3—C5 | 1.466 (3) | C13—H13A | 0.9800 |
| N4—C13 | 1.500 (3) | C14—C15 | 1.516 (3) |
| C1—C2 | 1.550 (3) | C14—H14A | 0.9800 |
| C2—C3 | 1.513 (3) | C15—C20 | 1.389 (3) |
| C2—C14 | 1.568 (3) | C15—C16 | 1.393 (3) |
| C3—C4 | 1.374 (3) | C16—C17 | 1.382 (3) |
| C3—C8 | 1.405 (3) | C16—H16A | 0.9300 |
| C4—C5 | 1.389 (3) | C17—C18 | 1.380 (3) |
| C4—H4A | 0.9300 | C17—H17A | 0.9300 |
| C5—C6 | 1.374 (3) | C18—C19 | 1.384 (3) |
| C6—C7 | 1.386 (3) | C18—H18A | 0.9300 |
| C6—H6A | 0.9300 | C19—C20 | 1.385 (3) |
| C7—C8 | 1.380 (3) | C19—H19A | 0.9300 |
| C7—H7A | 0.9300 | C20—H20A | 0.9300 |
| C9—C10 | 1.526 (3) | ||
| C1—N1—C8 | 111.68 (19) | C9—C10—H10A | 111.4 |
| C1—N1—H1A | 124.2 | C11—C10—H10B | 111.4 |
| C8—N1—H1A | 124.2 | C9—C10—H10B | 111.4 |
| C2—N2—C9 | 120.73 (18) | H10A—C10—H10B | 109.3 |
| C2—N2—C12 | 109.45 (18) | C12—C11—C10 | 101.42 (19) |
| C9—N2—C12 | 108.40 (18) | C12—C11—H11A | 111.5 |
| O2—N3—O3 | 122.6 (2) | C10—C11—H11A | 111.5 |
| O2—N3—C5 | 118.6 (2) | C12—C11—H11B | 111.5 |
| O3—N3—C5 | 118.8 (2) | C10—C11—H11B | 111.5 |
| O4—N4—O5 | 123.8 (2) | H11A—C11—H11B | 109.3 |
| O4—N4—C13 | 117.0 (2) | N2—C12—C11 | 104.72 (19) |
| O5—N4—C13 | 119.1 (2) | N2—C12—C13 | 104.90 (18) |
| O1—C1—N1 | 126.6 (2) | C11—C12—C13 | 118.2 (2) |
| O1—C1—C2 | 125.2 (2) | N2—C12—H12A | 109.5 |
| N1—C1—C2 | 108.18 (19) | C11—C12—H12A | 109.5 |
| N2—C2—C3 | 120.44 (19) | C13—C12—H12A | 109.5 |
| N2—C2—C1 | 107.23 (17) | N4—C13—C14 | 113.83 (19) |
| C3—C2—C1 | 101.93 (18) | N4—C13—C12 | 110.60 (19) |
| N2—C2—C14 | 105.01 (17) | C14—C13—C12 | 104.84 (19) |
| C3—C2—C14 | 111.59 (18) | N4—C13—H13A | 109.1 |
| C1—C2—C14 | 110.43 (18) | C14—C13—H13A | 109.1 |
| C4—C3—C8 | 119.1 (2) | C12—C13—H13A | 109.1 |
| C4—C3—C2 | 132.6 (2) | C13—C14—C15 | 117.51 (19) |
| C8—C3—C2 | 108.11 (18) | C13—C14—C2 | 100.67 (17) |
| C3—C4—C5 | 117.6 (2) | C15—C14—C2 | 116.00 (18) |
| C3—C4—H4A | 121.2 | C13—C14—H14A | 107.3 |
| C5—C4—H4A | 121.2 | C15—C14—H14A | 107.3 |
| C6—C5—C4 | 123.5 (2) | C2—C14—H14A | 107.3 |
| C6—C5—N3 | 118.1 (2) | C20—C15—C16 | 117.6 (2) |
| C4—C5—N3 | 118.5 (2) | C20—C15—C14 | 119.3 (2) |
| C5—C6—C7 | 119.3 (2) | C16—C15—C14 | 123.1 (2) |
| C5—C6—H6A | 120.3 | C17—C16—C15 | 121.2 (2) |
| C7—C6—H6A | 120.3 | C17—C16—H16A | 119.4 |
| C8—C7—C6 | 117.7 (2) | C15—C16—H16A | 119.4 |
| C8—C7—H7A | 121.1 | C18—C17—C16 | 120.2 (2) |
| C6—C7—H7A | 121.1 | C18—C17—H17A | 119.9 |
| C7—C8—N1 | 127.4 (2) | C16—C17—H17A | 119.9 |
| C7—C8—C3 | 122.7 (2) | C17—C18—C19 | 119.8 (2) |
| N1—C8—C3 | 109.93 (19) | C17—C18—H18A | 120.1 |
| N2—C9—C10 | 104.50 (19) | C19—C18—H18A | 120.1 |
| N2—C9—H9A | 110.9 | C18—C19—C20 | 119.6 (2) |
| C10—C9—H9A | 110.9 | C18—C19—H19A | 120.2 |
| N2—C9—H9B | 110.9 | C20—C19—H19A | 120.2 |
| C10—C9—H9B | 110.9 | C19—C20—C15 | 121.6 (2) |
| H9A—C9—H9B | 108.9 | C19—C20—H20A | 119.2 |
| C11—C10—C9 | 101.72 (19) | C15—C20—H20A | 119.2 |
| C11—C10—H10A | 111.4 | ||
| C8—N1—C1—O1 | −178.1 (2) | C12—N2—C9—C10 | 13.3 (2) |
| C8—N1—C1—C2 | 1.6 (2) | N2—C9—C10—C11 | −35.4 (2) |
| C9—N2—C2—C3 | 18.2 (3) | C9—C10—C11—C12 | 43.5 (2) |
| C12—N2—C2—C3 | 145.0 (2) | C2—N2—C12—C11 | −119.4 (2) |
| C9—N2—C2—C1 | 133.9 (2) | C9—N2—C12—C11 | 14.2 (2) |
| C12—N2—C2—C1 | −99.3 (2) | C2—N2—C12—C13 | 5.8 (2) |
| C9—N2—C2—C14 | −108.6 (2) | C9—N2—C12—C13 | 139.27 (19) |
| C12—N2—C2—C14 | 18.2 (2) | C10—C11—C12—N2 | −35.9 (2) |
| O1—C1—C2—N2 | 48.8 (3) | C10—C11—C12—C13 | −152.1 (2) |
| N1—C1—C2—N2 | −130.89 (19) | O4—N4—C13—C14 | 152.6 (2) |
| O1—C1—C2—C3 | 176.2 (2) | O5—N4—C13—C14 | −29.7 (3) |
| N1—C1—C2—C3 | −3.5 (2) | O4—N4—C13—C12 | −89.7 (3) |
| O1—C1—C2—C14 | −65.1 (3) | O5—N4—C13—C12 | 88.1 (3) |
| N1—C1—C2—C14 | 115.2 (2) | N2—C12—C13—N4 | −151.47 (18) |
| N2—C2—C3—C4 | −61.6 (3) | C11—C12—C13—N4 | −35.3 (3) |
| C1—C2—C3—C4 | 180.0 (2) | N2—C12—C13—C14 | −28.4 (2) |
| C14—C2—C3—C4 | 62.1 (3) | C11—C12—C13—C14 | 87.8 (2) |
| N2—C2—C3—C8 | 122.5 (2) | N4—C13—C14—C15 | −73.9 (3) |
| C1—C2—C3—C8 | 4.1 (2) | C12—C13—C14—C15 | 165.08 (19) |
| C14—C2—C3—C8 | −113.7 (2) | N4—C13—C14—C2 | 159.14 (19) |
| C8—C3—C4—C5 | −1.1 (3) | C12—C13—C14—C2 | 38.1 (2) |
| C2—C3—C4—C5 | −176.5 (2) | N2—C2—C14—C13 | −34.7 (2) |
| C3—C4—C5—C6 | 3.1 (3) | C3—C2—C14—C13 | −166.78 (18) |
| C3—C4—C5—N3 | −176.6 (2) | C1—C2—C14—C13 | 80.6 (2) |
| O2—N3—C5—C6 | −174.4 (2) | N2—C2—C14—C15 | −162.62 (18) |
| O3—N3—C5—C6 | 5.0 (3) | C3—C2—C14—C15 | 65.3 (2) |
| O2—N3—C5—C4 | 5.3 (3) | C1—C2—C14—C15 | −47.3 (2) |
| O3—N3—C5—C4 | −175.2 (2) | C13—C14—C15—C20 | 144.2 (2) |
| C4—C5—C6—C7 | −2.3 (4) | C2—C14—C15—C20 | −96.7 (2) |
| N3—C5—C6—C7 | 177.4 (2) | C13—C14—C15—C16 | −36.4 (3) |
| C5—C6—C7—C8 | −0.5 (3) | C2—C14—C15—C16 | 82.7 (3) |
| C6—C7—C8—N1 | −179.5 (2) | C20—C15—C16—C17 | −0.6 (4) |
| C6—C7—C8—C3 | 2.5 (3) | C14—C15—C16—C17 | 179.9 (2) |
| C1—N1—C8—C7 | −177.0 (2) | C15—C16—C17—C18 | −0.2 (4) |
| C1—N1—C8—C3 | 1.2 (3) | C16—C17—C18—C19 | 1.2 (4) |
| C4—C3—C8—C7 | −1.7 (3) | C17—C18—C19—C20 | −1.4 (4) |
| C2—C3—C8—C7 | 174.8 (2) | C18—C19—C20—C15 | 0.6 (4) |
| C4—C3—C8—N1 | 180.0 (2) | C16—C15—C20—C19 | 0.4 (4) |
| C2—C3—C8—N1 | −3.5 (2) | C14—C15—C20—C19 | 179.9 (2) |
| C2—N2—C9—C10 | 140.7 (2) |
| H··· | ||||
| N1—H1A···O1i | 0.86 | 1.97 | 2.808 (2) | 164 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 1.97 | 2.808 (2) | 164 |
Symmetry code: (i) .