| Literature DB >> 21201700 |
Raoudha Mezghani Jarraya, Amira Bouaziz, Besma Hamdi, Abdelhamid Ben Salah, Mohamed Damak.
Abstract
THE TITLE COMPOUND (SYSTEMATIC NAME: 1,2-dimethyl-6-meth-oxy-1,2,3,4-tetra-hydro-isoquinolin-7-ol), C(12)H(17)NO(2), is a major alkaloid isolated from Hammada scoparia leaves. It belongs to the isoquinoline family and it was characterized by NMR spectroscopy and X-ray crystallographic techniques. The absolute configuration could not be reliably determined. An intermolecular O-H⋯N hydrogen bond is present in the crystal structure.Entities:
Year: 2008 PMID: 21201700 PMCID: PMC2960642 DOI: 10.1107/S160053680802477X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H17NO2 | |
| Melting point: 473 K | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 2100 reflections |
| θ = 2.7–21.3º | |
| µ = 0.09 mm−1 | |
| Prism, colourless | |
| 0.48 × 0.37 × 0.22 mm | |
| Bruker SMART CCD area-detector diffractometer | 3132 independent reflections |
| Radiation source: sealed tube | 2870 reflections with |
| Monochromator: graphite | |
| θmax = 37.1º | |
| φ and ω scans | θmin = 2.4º |
| Absorption correction: multi-scan(Becker & Coppens, 1974) | |
| 23859 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.001 | |
| 3132 reflections | Δρmax = 0.44 e Å−3 |
| 136 parameters | Δρmin = −0.24 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.05540 (10) | 0.85207 (7) | 0.13064 (6) | 0.01206 (13) | |
| H1 | 0.0422 | 0.9013 | 0.0673 | 0.014* | |
| C3 | 0.25806 (11) | 0.83001 (8) | 0.27194 (6) | 0.01586 (14) | |
| H3A | 0.1557 | 0.8026 | 0.3124 | 0.019* | |
| H3B | 0.3386 | 0.8766 | 0.3167 | 0.019* | |
| C4 | 0.35296 (11) | 0.71807 (8) | 0.22912 (6) | 0.01475 (14) | |
| H4A | 0.4694 | 0.7437 | 0.2029 | 0.018* | |
| H4B | 0.3725 | 0.6567 | 0.2834 | 0.018* | |
| C4A | 0.24733 (10) | 0.65931 (7) | 0.14534 (6) | 0.01156 (13) | |
| C5 | 0.29165 (11) | 0.54034 (7) | 0.11057 (6) | 0.01275 (13) | |
| H5 | 0.3867 | 0.4973 | 0.1412 | 0.015* | |
| C6 | 0.19977 (11) | 0.48449 (7) | 0.03258 (6) | 0.01301 (13) | |
| C7 | 0.05722 (11) | 0.54781 (7) | −0.01256 (6) | 0.01242 (13) | |
| C8 | 0.01464 (10) | 0.66497 (7) | 0.02168 (6) | 0.01194 (13) | |
| H8 | −0.0812 | 0.7078 | −0.0084 | 0.014* | |
| C8A | 0.10928 (10) | 0.72232 (7) | 0.09969 (6) | 0.01059 (12) | |
| C10 | 0.14695 (12) | 1.03330 (8) | 0.22797 (7) | 0.01802 (15) | |
| H10A | 0.1079 | 1.0854 | 0.1718 | 0.027* | |
| H10B | 0.2483 | 1.0720 | 0.2611 | 0.027* | |
| H10C | 0.0507 | 1.0242 | 0.2766 | 0.027* | |
| C11 | −0.12539 (11) | 0.85179 (8) | 0.18297 (7) | 0.01757 (15) | |
| H11A | −0.1569 | 0.9365 | 0.2022 | 0.026* | |
| H11B | −0.1200 | 0.7998 | 0.2434 | 0.026* | |
| H11C | −0.2144 | 0.8189 | 0.1367 | 0.026* | |
| C12 | 0.37900 (13) | 0.30406 (9) | 0.03586 (8) | 0.02182 (18) | |
| H12A | 0.3910 | 0.2239 | 0.0020 | 0.033* | |
| H12B | 0.3579 | 0.2908 | 0.1079 | 0.033* | |
| H12C | 0.4874 | 0.3520 | 0.0269 | 0.033* | |
| N1 | 0.19793 (9) | 0.91062 (6) | 0.18960 (5) | 0.01301 (12) | |
| O1 | 0.23450 (9) | 0.37016 (6) | −0.00665 (5) | 0.01876 (13) | |
| O2 | −0.02759 (9) | 0.49009 (5) | −0.08915 (5) | 0.01773 (13) | |
| H2 | −0.1054 | 0.5372 | −0.1126 | 0.027* |
| C1 | 0.0121 (3) | 0.0114 (3) | 0.0127 (3) | 0.0012 (2) | −0.0006 (2) | −0.0010 (2) |
| C3 | 0.0162 (3) | 0.0185 (3) | 0.0128 (3) | −0.0004 (3) | −0.0017 (3) | −0.0026 (3) |
| C4 | 0.0142 (3) | 0.0154 (3) | 0.0148 (3) | 0.0000 (3) | −0.0041 (3) | −0.0009 (3) |
| C4A | 0.0107 (3) | 0.0121 (3) | 0.0119 (3) | −0.0005 (2) | −0.0007 (2) | 0.0007 (2) |
| C5 | 0.0119 (3) | 0.0119 (3) | 0.0144 (3) | 0.0011 (2) | −0.0023 (2) | 0.0009 (2) |
| C6 | 0.0132 (3) | 0.0100 (3) | 0.0159 (3) | 0.0018 (2) | −0.0021 (3) | −0.0005 (2) |
| C7 | 0.0126 (3) | 0.0102 (3) | 0.0145 (3) | 0.0007 (2) | −0.0027 (3) | −0.0004 (2) |
| C8 | 0.0116 (3) | 0.0107 (3) | 0.0135 (3) | 0.0009 (2) | −0.0023 (2) | 0.0000 (2) |
| C8A | 0.0103 (3) | 0.0100 (3) | 0.0115 (3) | 0.0001 (2) | −0.0002 (2) | 0.0007 (2) |
| C10 | 0.0179 (4) | 0.0149 (3) | 0.0212 (3) | 0.0006 (3) | 0.0022 (3) | −0.0053 (3) |
| C11 | 0.0121 (3) | 0.0191 (3) | 0.0215 (3) | 0.0012 (3) | 0.0012 (3) | −0.0040 (3) |
| C12 | 0.0231 (4) | 0.0173 (3) | 0.0250 (4) | 0.0099 (3) | −0.0070 (4) | −0.0022 (3) |
| N1 | 0.0132 (3) | 0.0113 (3) | 0.0145 (3) | −0.0006 (2) | 0.0010 (2) | −0.0031 (2) |
| O1 | 0.0199 (3) | 0.0113 (2) | 0.0251 (3) | 0.0056 (2) | −0.0085 (3) | −0.0043 (2) |
| O2 | 0.0189 (3) | 0.0132 (2) | 0.0211 (3) | 0.0035 (2) | −0.0097 (2) | −0.0050 (2) |
| C1—N1 | 1.4780 (10) | C7—O2 | 1.3555 (10) |
| C1—C8A | 1.5174 (10) | C7—C8 | 1.3837 (10) |
| C1—C11 | 1.5386 (12) | C8—C8A | 1.4045 (10) |
| C1—H1 | 1.0000 | C8—H8 | 0.9500 |
| C3—N1 | 1.4703 (11) | C10—N1 | 1.4722 (10) |
| C3—C4 | 1.5185 (12) | C10—H10A | 0.9800 |
| C3—H3A | 0.9900 | C10—H10B | 0.9800 |
| C3—H3B | 0.9900 | C10—H10C | 0.9800 |
| C4—C4A | 1.5110 (11) | C11—H11A | 0.9800 |
| C4—H4A | 0.9900 | C11—H11B | 0.9800 |
| C4—H4B | 0.9900 | C11—H11C | 0.9800 |
| C4A—C8A | 1.3892 (10) | C12—O1 | 1.4257 (11) |
| C4A—C5 | 1.4070 (11) | C12—H12A | 0.9800 |
| C5—C6 | 1.3866 (11) | C12—H12B | 0.9800 |
| C5—H5 | 0.9500 | C12—H12C | 0.9800 |
| C6—O1 | 1.3665 (10) | O2—H2 | 0.8400 |
| C6—C7 | 1.4139 (11) | ||
| N1—C1—C8A | 109.97 (6) | C7—C8—C8A | 121.76 (7) |
| N1—C1—C11 | 114.55 (6) | C7—C8—H8 | 119.1 |
| C8A—C1—C11 | 111.16 (7) | C8A—C8—H8 | 119.1 |
| N1—C1—H1 | 106.9 | C4A—C8A—C8 | 119.42 (7) |
| C8A—C1—H1 | 106.9 | C4A—C8A—C1 | 122.58 (7) |
| C11—C1—H1 | 106.9 | C8—C8A—C1 | 117.99 (7) |
| N1—C3—C4 | 109.96 (7) | N1—C10—H10A | 109.5 |
| N1—C3—H3A | 109.7 | N1—C10—H10B | 109.5 |
| C4—C3—H3A | 109.7 | H10A—C10—H10B | 109.5 |
| N1—C3—H3B | 109.7 | N1—C10—H10C | 109.5 |
| C4—C3—H3B | 109.7 | H10A—C10—H10C | 109.5 |
| H3A—C3—H3B | 108.2 | H10B—C10—H10C | 109.5 |
| C4A—C4—C3 | 110.99 (7) | C1—C11—H11A | 109.5 |
| C4A—C4—H4A | 109.4 | C1—C11—H11B | 109.5 |
| C3—C4—H4A | 109.4 | H11A—C11—H11B | 109.5 |
| C4A—C4—H4B | 109.4 | C1—C11—H11C | 109.5 |
| C3—C4—H4B | 109.4 | H11A—C11—H11C | 109.5 |
| H4A—C4—H4B | 108.0 | H11B—C11—H11C | 109.5 |
| C8A—C4A—C5 | 119.05 (7) | O1—C12—H12A | 109.5 |
| C8A—C4A—C4 | 121.03 (7) | O1—C12—H12B | 109.5 |
| C5—C4A—C4 | 119.90 (7) | H12A—C12—H12B | 109.5 |
| C6—C5—C4A | 121.49 (7) | O1—C12—H12C | 109.5 |
| C6—C5—H5 | 119.3 | H12A—C12—H12C | 109.5 |
| C4A—C5—H5 | 119.3 | H12B—C12—H12C | 109.5 |
| O1—C6—C5 | 125.51 (7) | C3—N1—C10 | 111.00 (7) |
| O1—C6—C7 | 115.09 (7) | C3—N1—C1 | 111.54 (6) |
| C5—C6—C7 | 119.39 (7) | C10—N1—C1 | 112.10 (7) |
| O2—C7—C8 | 123.81 (7) | C6—O1—C12 | 116.80 (7) |
| O2—C7—C6 | 117.30 (7) | C7—O2—H2 | 109.5 |
| C8—C7—C6 | 118.87 (7) | ||
| N1—C3—C4—C4A | −48.19 (9) | C4—C4A—C8A—C1 | −0.30 (11) |
| C3—C4—C4A—C8A | 15.68 (11) | C7—C8—C8A—C4A | −1.26 (12) |
| C3—C4—C4A—C5 | −166.13 (7) | C7—C8—C8A—C1 | 178.70 (7) |
| C8A—C4A—C5—C6 | −0.56 (12) | N1—C1—C8A—C4A | 16.96 (10) |
| C4—C4A—C5—C6 | −178.78 (7) | C11—C1—C8A—C4A | −110.97 (8) |
| C4A—C5—C6—O1 | 179.31 (8) | N1—C1—C8A—C8 | −163.01 (7) |
| C4A—C5—C6—C7 | −0.60 (12) | C11—C1—C8A—C8 | 69.06 (9) |
| O1—C6—C7—O2 | −0.54 (11) | C4—C3—N1—C10 | −165.48 (7) |
| C5—C6—C7—O2 | 179.38 (7) | C4—C3—N1—C1 | 68.74 (8) |
| O1—C6—C7—C8 | −179.10 (7) | C8A—C1—N1—C3 | −50.54 (8) |
| C5—C6—C7—C8 | 0.82 (12) | C11—C1—N1—C3 | 75.49 (8) |
| O2—C7—C8—C8A | −178.36 (8) | C8A—C1—N1—C10 | −175.71 (6) |
| C6—C7—C8—C8A | 0.10 (12) | C11—C1—N1—C10 | −49.68 (9) |
| C5—C4A—C8A—C8 | 1.47 (11) | C5—C6—O1—C12 | −0.82 (13) |
| C4—C4A—C8A—C8 | 179.67 (7) | C7—C6—O1—C12 | 179.10 (8) |
| C5—C4A—C8A—C1 | −178.50 (7) |
| H··· | ||||
| O2—H2···N1i | 0.84 | 1.90 | 2.6970 (10) | 159 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯N1i | 0.84 | 1.90 | 2.6970 (10) | 159 |
Symmetry code: (i) .