Literature DB >> 21201700

N-Methyl-isosalsoline from Hammada scoparia.

Raoudha Mezghani Jarraya, Amira Bouaziz, Besma Hamdi, Abdelhamid Ben Salah, Mohamed Damak.   

Abstract

THE TITLE COMPOUND (SYSTEMATIC NAME: 1,2-dimethyl-6-meth-oxy-1,2,3,4-tetra-hydro-isoquinolin-7-ol), C(12)H(17)NO(2), is a major alkaloid isolated from Hammada scoparia leaves. It belongs to the isoquinoline family and it was characterized by NMR spectroscopy and X-ray crystallographic techniques. The absolute configuration could not be reliably determined. An intermolecular O-H⋯N hydrogen bond is present in the crystal structure.

Entities:  

Year:  2008        PMID: 21201700      PMCID: PMC2960642          DOI: 10.1107/S160053680802477X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature on Hammada scoparia and isoquinoline alkaloids, see: Baker (1996 ▶); Benkrief et al. (1990 ▶); Carling & Sandberg (1970 ▶); El-Shazly & Wink (2003 ▶); El-Shazly et al. (2005 ▶); Iwasa et al. (2001 ▶); Jarraya & Damak (2001 ▶); Vetulani et al. (2001 ▶, 2003 ▶).

Experimental

Crystal data

C12H17NO2 M = 207.27 Orthorhombic, a = 7.5942 (6) Å b = 10.8082 (8) Å c = 13.2716 (10) Å V = 1089.33 (14) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 200 (2) K 0.48 × 0.37 × 0.22 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (Becker & Coppens, 1974 ▶) T min = 0.961, T max = 0.988 23859 measured reflections 3132 independent reflections 2870 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.089 S = 1.06 3132 reflections 136 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680802477X/zl2131sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680802477X/zl2131Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H17NO2Dx = 1.264 Mg m3
Mr = 207.27Melting point: 473 K
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2100 reflections
a = 7.5942 (6) Åθ = 2.7–21.3º
b = 10.8082 (8) ŵ = 0.09 mm1
c = 13.2716 (10) ÅT = 200 (2) K
V = 1089.33 (14) Å3Prism, colourless
Z = 40.48 × 0.37 × 0.22 mm
F000 = 448
Bruker SMART CCD area-detector diffractometer3132 independent reflections
Radiation source: sealed tube2870 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.030
T = 200(2) Kθmax = 37.1º
φ and ω scansθmin = 2.4º
Absorption correction: multi-scan(Becker & Coppens, 1974)h = −12→10
Tmin = 0.961, Tmax = 0.988k = −18→18
23859 measured reflectionsl = −22→22
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.089  w = 1/[σ2(Fo2) + (0.0579P)2 + 0.028P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
3132 reflectionsΔρmax = 0.44 e Å3
136 parametersΔρmin = −0.24 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.05540 (10)0.85207 (7)0.13064 (6)0.01206 (13)
H10.04220.90130.06730.014*
C30.25806 (11)0.83001 (8)0.27194 (6)0.01586 (14)
H3A0.15570.80260.31240.019*
H3B0.33860.87660.31670.019*
C40.35296 (11)0.71807 (8)0.22912 (6)0.01475 (14)
H4A0.46940.74370.20290.018*
H4B0.37250.65670.28340.018*
C4A0.24733 (10)0.65931 (7)0.14534 (6)0.01156 (13)
C50.29165 (11)0.54034 (7)0.11057 (6)0.01275 (13)
H50.38670.49730.14120.015*
C60.19977 (11)0.48449 (7)0.03258 (6)0.01301 (13)
C70.05722 (11)0.54781 (7)−0.01256 (6)0.01242 (13)
C80.01464 (10)0.66497 (7)0.02168 (6)0.01194 (13)
H8−0.08120.7078−0.00840.014*
C8A0.10928 (10)0.72232 (7)0.09969 (6)0.01059 (12)
C100.14695 (12)1.03330 (8)0.22797 (7)0.01802 (15)
H10A0.10791.08540.17180.027*
H10B0.24831.07200.26110.027*
H10C0.05071.02420.27660.027*
C11−0.12539 (11)0.85179 (8)0.18297 (7)0.01757 (15)
H11A−0.15690.93650.20220.026*
H11B−0.12000.79980.24340.026*
H11C−0.21440.81890.13670.026*
C120.37900 (13)0.30406 (9)0.03586 (8)0.02182 (18)
H12A0.39100.22390.00200.033*
H12B0.35790.29080.10790.033*
H12C0.48740.35200.02690.033*
N10.19793 (9)0.91062 (6)0.18960 (5)0.01301 (12)
O10.23450 (9)0.37016 (6)−0.00665 (5)0.01876 (13)
O2−0.02759 (9)0.49009 (5)−0.08915 (5)0.01773 (13)
H2−0.10540.5372−0.11260.027*
U11U22U33U12U13U23
C10.0121 (3)0.0114 (3)0.0127 (3)0.0012 (2)−0.0006 (2)−0.0010 (2)
C30.0162 (3)0.0185 (3)0.0128 (3)−0.0004 (3)−0.0017 (3)−0.0026 (3)
C40.0142 (3)0.0154 (3)0.0148 (3)0.0000 (3)−0.0041 (3)−0.0009 (3)
C4A0.0107 (3)0.0121 (3)0.0119 (3)−0.0005 (2)−0.0007 (2)0.0007 (2)
C50.0119 (3)0.0119 (3)0.0144 (3)0.0011 (2)−0.0023 (2)0.0009 (2)
C60.0132 (3)0.0100 (3)0.0159 (3)0.0018 (2)−0.0021 (3)−0.0005 (2)
C70.0126 (3)0.0102 (3)0.0145 (3)0.0007 (2)−0.0027 (3)−0.0004 (2)
C80.0116 (3)0.0107 (3)0.0135 (3)0.0009 (2)−0.0023 (2)0.0000 (2)
C8A0.0103 (3)0.0100 (3)0.0115 (3)0.0001 (2)−0.0002 (2)0.0007 (2)
C100.0179 (4)0.0149 (3)0.0212 (3)0.0006 (3)0.0022 (3)−0.0053 (3)
C110.0121 (3)0.0191 (3)0.0215 (3)0.0012 (3)0.0012 (3)−0.0040 (3)
C120.0231 (4)0.0173 (3)0.0250 (4)0.0099 (3)−0.0070 (4)−0.0022 (3)
N10.0132 (3)0.0113 (3)0.0145 (3)−0.0006 (2)0.0010 (2)−0.0031 (2)
O10.0199 (3)0.0113 (2)0.0251 (3)0.0056 (2)−0.0085 (3)−0.0043 (2)
O20.0189 (3)0.0132 (2)0.0211 (3)0.0035 (2)−0.0097 (2)−0.0050 (2)
C1—N11.4780 (10)C7—O21.3555 (10)
C1—C8A1.5174 (10)C7—C81.3837 (10)
C1—C111.5386 (12)C8—C8A1.4045 (10)
C1—H11.0000C8—H80.9500
C3—N11.4703 (11)C10—N11.4722 (10)
C3—C41.5185 (12)C10—H10A0.9800
C3—H3A0.9900C10—H10B0.9800
C3—H3B0.9900C10—H10C0.9800
C4—C4A1.5110 (11)C11—H11A0.9800
C4—H4A0.9900C11—H11B0.9800
C4—H4B0.9900C11—H11C0.9800
C4A—C8A1.3892 (10)C12—O11.4257 (11)
C4A—C51.4070 (11)C12—H12A0.9800
C5—C61.3866 (11)C12—H12B0.9800
C5—H50.9500C12—H12C0.9800
C6—O11.3665 (10)O2—H20.8400
C6—C71.4139 (11)
N1—C1—C8A109.97 (6)C7—C8—C8A121.76 (7)
N1—C1—C11114.55 (6)C7—C8—H8119.1
C8A—C1—C11111.16 (7)C8A—C8—H8119.1
N1—C1—H1106.9C4A—C8A—C8119.42 (7)
C8A—C1—H1106.9C4A—C8A—C1122.58 (7)
C11—C1—H1106.9C8—C8A—C1117.99 (7)
N1—C3—C4109.96 (7)N1—C10—H10A109.5
N1—C3—H3A109.7N1—C10—H10B109.5
C4—C3—H3A109.7H10A—C10—H10B109.5
N1—C3—H3B109.7N1—C10—H10C109.5
C4—C3—H3B109.7H10A—C10—H10C109.5
H3A—C3—H3B108.2H10B—C10—H10C109.5
C4A—C4—C3110.99 (7)C1—C11—H11A109.5
C4A—C4—H4A109.4C1—C11—H11B109.5
C3—C4—H4A109.4H11A—C11—H11B109.5
C4A—C4—H4B109.4C1—C11—H11C109.5
C3—C4—H4B109.4H11A—C11—H11C109.5
H4A—C4—H4B108.0H11B—C11—H11C109.5
C8A—C4A—C5119.05 (7)O1—C12—H12A109.5
C8A—C4A—C4121.03 (7)O1—C12—H12B109.5
C5—C4A—C4119.90 (7)H12A—C12—H12B109.5
C6—C5—C4A121.49 (7)O1—C12—H12C109.5
C6—C5—H5119.3H12A—C12—H12C109.5
C4A—C5—H5119.3H12B—C12—H12C109.5
O1—C6—C5125.51 (7)C3—N1—C10111.00 (7)
O1—C6—C7115.09 (7)C3—N1—C1111.54 (6)
C5—C6—C7119.39 (7)C10—N1—C1112.10 (7)
O2—C7—C8123.81 (7)C6—O1—C12116.80 (7)
O2—C7—C6117.30 (7)C7—O2—H2109.5
C8—C7—C6118.87 (7)
N1—C3—C4—C4A−48.19 (9)C4—C4A—C8A—C1−0.30 (11)
C3—C4—C4A—C8A15.68 (11)C7—C8—C8A—C4A−1.26 (12)
C3—C4—C4A—C5−166.13 (7)C7—C8—C8A—C1178.70 (7)
C8A—C4A—C5—C6−0.56 (12)N1—C1—C8A—C4A16.96 (10)
C4—C4A—C5—C6−178.78 (7)C11—C1—C8A—C4A−110.97 (8)
C4A—C5—C6—O1179.31 (8)N1—C1—C8A—C8−163.01 (7)
C4A—C5—C6—C7−0.60 (12)C11—C1—C8A—C869.06 (9)
O1—C6—C7—O2−0.54 (11)C4—C3—N1—C10−165.48 (7)
C5—C6—C7—O2179.38 (7)C4—C3—N1—C168.74 (8)
O1—C6—C7—C8−179.10 (7)C8A—C1—N1—C3−50.54 (8)
C5—C6—C7—C80.82 (12)C11—C1—N1—C375.49 (8)
O2—C7—C8—C8A−178.36 (8)C8A—C1—N1—C10−175.71 (6)
C6—C7—C8—C8A0.10 (12)C11—C1—N1—C10−49.68 (9)
C5—C4A—C8A—C81.47 (11)C5—C6—O1—C12−0.82 (13)
C4—C4A—C8A—C8179.67 (7)C7—C6—O1—C12179.10 (8)
C5—C4A—C8A—C1−178.50 (7)
D—H···AD—HH···AD···AD—H···A
O2—H2···N1i0.841.902.6970 (10)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N1i0.841.902.6970 (10)159

Symmetry code: (i) .

  8 in total

1.  Alkaloids of Haloxylon salicornicum (Moq.) Bunge ex Boiss. (Chenopodiaceae).

Authors:  A M El-Shazly; G Dora; M Wink
Journal:  Pharmazie       Date:  2005-12       Impact factor: 1.267

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Alkaloids of haloxylon articulatum.

Authors:  C Carling; F Sandberg
Journal:  Acta Pharm Suec       Date:  1970-06

4.  Simple isoquinoline and benzylisoquinoline alkaloids as potential antimicrobial, antimalarial, cytotoxic, and anti-HIV agents.

Authors:  K Iwasa; M Moriyasu; Y Tachibana; H S Kim; Y Wataya; W Wiegrebe; K F Bastow; L M Cosentino; M Kozuka; K H Lee
Journal:  Bioorg Med Chem       Date:  2001-11       Impact factor: 3.641

5.  [Alkaloids and flavonoid from aerial parts of Hammada articulata ssp. scoparia].

Authors:  R Benkrief; M Brum-Bousquet; F Tillequin; M Koch
Journal:  Ann Pharm Fr       Date:  1990

6.  Opposite effect of simple tetrahydroisoquinolines on amphetamine- and morphine-stimulated locomotor activity in mice.

Authors:  J Vetulani; I Nalepa; L Antkiewicz-Michaluk; M Sansone
Journal:  J Neural Transm (Vienna)       Date:  2001       Impact factor: 3.575

Review 7.  A possible physiological role for cerebral tetrahydroisoquinolines.

Authors:  Jerzy Vetulani; Lucyna Antkiewicz-Michaluk; Irena Nalepa; Mario Sansone
Journal:  Neurotox Res       Date:  2003       Impact factor: 3.911

8.  Tetrahydroisoquinoline and beta-carboline alkaloids from Haloxylon articulatum (Cav.) Bunge (Chenopodiaceae).

Authors:  Assem El-Shazly; Michael Wink
Journal:  Z Naturforsch C J Biosci       Date:  2003 Jul-Aug
  8 in total
  1 in total

1.  Antioxidant activity and hepatoprotective potential of Hammada scoparia against ethanol-induced liver injury in rats.

Authors:  Ezzeddine Bourogaa; Riadh Nciri; Raoudha Mezghani-Jarraya; Claire Racaud-Sultan; Mohamed Damak; Abdelfattah El Feki
Journal:  J Physiol Biochem       Date:  2012-08-15       Impact factor: 4.158

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.